Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
We have updated the bulk download module, which simplifies the download process! Please find the new online form by following this link

hsa-miR-604

Loading... Please wait, this might take a few seconds...



Filters
Gene
miRNA
Pr. score
Methods
AC074117.10
hsa-miR-604
IP

Gene Details
Chromosome: 2
Transcript: ENST00000447070
Biotype: antisense
Gene id: ENSG00000234072
Gene Name: AC074117.10
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-604
Sequence: aggcugcggaauucaggac
MirBase ID: MIMAT0003272
Related Diseases:

Publication
Tissue
Cell Type
Methods
Tested Cell Line: HS5
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
2:27357851-27357879
exon
HITS-CLIP
DIRECT
LncBasev2
2:27357851-27357879
exon
HITS-CLIP
DIRECT
LncBasev2
ATP8B5P
hsa-miR-604
-
IP

Gene Details
Chromosome: 9
Transcript: ENST00000430846
Biotype: processed_transcript
Gene id: ENSG00000179766
Gene Name: ATP8B5P
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-604
Sequence: aggcugcggaauucaggac
MirBase ID: MIMAT0003272
Related Diseases:

Publication
Tissue
Cell Type
Methods
Tested Cell Line: HS5
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
9:35449965-35449993
exon
HITS-CLIP
DIRECT
LncBasev2
CTC-359D24.3
hsa-miR-604
-
IP

Gene Details
Chromosome: 19
Transcript: ENST00000472362
Biotype: processed_transcript
Gene id: ENSG00000242615
Gene Name: CTC-359D24.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary

miRNA Details
Name: hsa-miR-604
Sequence: aggcugcggaauucaggac
MirBase ID: MIMAT0003272
Related Diseases:

Publication
Tissue
Cell Type
Methods
Bone Marrow
HS27a
IP
Tested Cell Line: HS27a
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
19:12143022-12143050
exon
HITS-CLIP
DIRECT
LncBasev2
CTD-2666L21.3
hsa-miR-604
-
IP

Gene Details
Chromosome: 19
Transcript: ENST00000461223
Biotype: processed_pseudogene
Gene id: ENSG00000213293
Gene Name: CTD-2666L21.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
IMR90 Lung Embryonic/Fetal/Stem/Progenitor

miRNA Details
Name: hsa-miR-604
Sequence: aggcugcggaauucaggac
MirBase ID: MIMAT0003272
Related Diseases:

Publication
Tissue
Cell Type
Methods
Tested Cell Line: HS5
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
19:12260426-12260454
exon
HITS-CLIP
DIRECT
LncBasev2
HIF1AP1
hsa-miR-604
-
IP

Gene Details
Chromosome: 14
Transcript: ENST00000553642
Biotype: processed_pseudogene
Gene id: ENSG00000258978
Gene Name: HIF1AP1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary

miRNA Details
Name: hsa-miR-604
Sequence: aggcugcggaauucaggac
MirBase ID: MIMAT0003272
Related Diseases:

Publication
Tissue
Cell Type
Methods
Tested Cell Line: HS5
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
14:75116531-75116559
exon
HITS-CLIP
DIRECT
LncBasev2
HNRNPKP4
hsa-miR-604
-
IP

Gene Details
Chromosome: 3
Transcript: ENST00000485383
Biotype: processed_pseudogene
Gene id: ENSG00000243547
Gene Name: HNRNPKP4
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-604
Sequence: aggcugcggaauucaggac
MirBase ID: MIMAT0003272
Related Diseases:

Publication
Tissue
Cell Type
Methods
Tested Cell Line: HS5
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
3:96350198-96350226
exon
HITS-CLIP
DIRECT
LncBasev2
MALAT1
hsa-miR-604
IP

Gene Details
Chromosome: 11
Transcript: ENST00000534336
Biotype: lincRNA
Gene id: ENSG00000251562
Gene Name: MALAT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary

miRNA Details
Name: hsa-miR-604
Sequence: aggcugcggaauucaggac
MirBase ID: MIMAT0003272
Related Diseases:

Publication
Tissue
Cell Type
Methods
Tested Cell Line: HS5
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:65505270-65505298
exon
HITS-CLIP
DIRECT
LncBasev2
11:65505591-65505619
exon
HITS-CLIP
DIRECT
LncBasev2
11:65502647-65502675
exon
HITS-CLIP
DIRECT
LncBasev2
11:65505270-65505298
exon
HITS-CLIP
DIRECT
LncBasev2
11:65505591-65505619
exon
HITS-CLIP
DIRECT
LncBasev2
NEAT1
hsa-miR-604
IP

Gene Details
Chromosome: 11
Transcript: ENST00000501122
Biotype: lincRNA
Gene id: ENSG00000245532
Gene Name: NEAT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary

miRNA Details
Name: hsa-miR-604
Sequence: aggcugcggaauucaggac
MirBase ID: MIMAT0003272
Related Diseases:

Publication
Tissue
Cell Type
Methods
Bone Marrow
HS27a
IP
Tested Cell Line: HS27a
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:65436599-65436627
exon
HITS-CLIP
DIRECT
LncBasev2
11:65434173-65434201
exon
HITS-CLIP
DIRECT
LncBasev2
11:65431033-65431061
exon
HITS-CLIP
DIRECT
LncBasev2
11:65442192-65442220
exon
HITS-CLIP
DIRECT
LncBasev2
11:65440789-65440817
exon
HITS-CLIP
DIRECT
LncBasev2
11:65428711-65428739
exon
HITS-CLIP
DIRECT
LncBasev2
11:65438090-65438138
exon
HITS-CLIP
DIRECT
LncBasev2
11:65440789-65440817
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-1033A18.1
hsa-miR-604
-
IP

Gene Details
Chromosome: 11
Transcript: ENST00000530115
Biotype: processed_pseudogene
Gene id: ENSG00000224411
Gene Name: RP11-1033A18.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant

miRNA Details
Name: hsa-miR-604
Sequence: aggcugcggaauucaggac
MirBase ID: MIMAT0003272
Related Diseases:

Publication
Tissue
Cell Type
Methods
Tested Cell Line: HS5
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:27889518-27889546
exon
HITS-CLIP
DIRECT
LncBasev2
11:27889518-27889546
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-227G15.3
hsa-miR-604
IP

Gene Details
Chromosome: 17
Transcript: ENST00000581915
Biotype: processed_transcript
Gene id: ENSG00000265794
Gene Name: RP11-227G15.3
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-604
Sequence: aggcugcggaauucaggac
MirBase ID: MIMAT0003272
Related Diseases:

Publication
Tissue
Cell Type
Methods
Tested Cell Line: HS5
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
17:32360632-32360683
exon
HITS-CLIP
DIRECT
LncBasev2
17:32360632-32360683
exon
HITS-CLIP
DIRECT
LncBasev2
RPL39P5
hsa-miR-604
-
IP

Gene Details
Chromosome: 3
Transcript: ENST00000273411
Biotype: processed_transcript
Gene id: ENSG00000214289
Gene Name: RPL39P5
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary

miRNA Details
Name: hsa-miR-604
Sequence: aggcugcggaauucaggac
MirBase ID: MIMAT0003272
Related Diseases:

Publication
Tissue
Cell Type
Methods
Tested Cell Line: HS5
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
3:134356440-134356468
exon
HITS-CLIP
DIRECT
LncBasev2
RPS11P5
hsa-miR-604
-
IP

Gene Details
Chromosome: 12
Transcript: ENST00000488441
Biotype: processed_pseudogene
Gene id: ENSG00000232888
Gene Name: RPS11P5
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary

miRNA Details
Name: hsa-miR-604
Sequence: aggcugcggaauucaggac
MirBase ID: MIMAT0003272
Related Diseases:

Publication
Tissue
Cell Type
Methods
Tested Cell Line: HS5
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
12:132825714-132825742
exon
HITS-CLIP
DIRECT
LncBasev2
SNHG3
hsa-miR-604
IP

Gene Details
Chromosome: 1
Transcript: ENST00000437681
Biotype: retained_intron
Gene id: ENSG00000242125
Gene Name: SNHG3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary

miRNA Details
Name: hsa-miR-604
Sequence: aggcugcggaauucaggac
MirBase ID: MIMAT0003272
Related Diseases:

Publication
Tissue
Cell Type
Methods
Bone Marrow
HS27a
IP
Tested Cell Line: HS27a
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
1:28507544-28507572
exon
HITS-CLIP
DIRECT
LncBasev2
TPI1P1
hsa-miR-604
-
IP

Gene Details
Chromosome: 1
Transcript: ENST00000420977
Biotype: processed_pseudogene
Gene id: ENSG00000226415
Gene Name: TPI1P1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary

miRNA Details
Name: hsa-miR-604
Sequence: aggcugcggaauucaggac
MirBase ID: MIMAT0003272
Related Diseases:

Publication
Tissue
Cell Type
Methods
Tested Cell Line: HS5
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
1:76700435-76700463
exon
HITS-CLIP
DIRECT
LncBasev2
XLOC_013852
hsa-miR-604
IP

Gene Details
Chromosome: chr21
Transcript: TCONS_00029193
Biotype: transcript isomorph
Gene id: XLOC_013852
Gene Name: XLOC_013852
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary

miRNA Details
Name: hsa-miR-604
Sequence: aggcugcggaauucaggac
MirBase ID: MIMAT0003272
Related Diseases:

Publication
Tissue
Cell Type
Methods
Tested Cell Line: HS5
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
chr21:8987265-8987293
exon
HITS-CLIP
DIRECT
LncBasev2
Funded by: