Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
You can download the LncBase v2 Prediction Module data with a 0.6 threshold through this link

hsa-miR-4287

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Filters

Gene
miRNA
Score
chr22-38_28785274-29006793.1
hsa-miR-4287
1.000

Gene Details
Chromosome: 22
Transcript: ENST00000623644
Biotype: lincRNA
Gene id: ENSG00000279978
Gene Name: chr22-38_28785274-29006793.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
124899-124923
0.028
7
9mer
186819-186832
0.019
7
8mer
228192-228218
0.009
2
7mer
130639-130663
0.008
2
7mer
145403-145426
0.007
5
7mer
47102-47126
0.007
2
8mer
88051-88066
0.006
3
7mer
62780-62797
0.006
3
7mer
259863-259889
0.005
2
7mer
160448-160473
0.005
2
7mer
162037-162053
0.005
4
7mer
258103-258127
0.005
2
7mer
105186-105200
0.005
3
7mer
102414-102424
0.005
2
7mer
18451-18465
0.005
2
7mer
130404-130425
0.004
5
8mer
241939-241960
0.004
2
7mer
212365-212380
0.004
4
7mer
61187-61202
0.004
1
7mer
126230-126252
0.004
2
7mer
33052-33071
0.004
4
7mer
209618-209639
0.004
2
7mer
60765-60780
0.004
2
7mer
160098-160114
0.004
4
7mer
166399-166421
0.004
3
8mer
104276-104296
0.004
1
8mer
227598-227615
0.004
2
7mer
255616-255629
0.003
2
7mer
78394-78418
0.003
2
7mer
63170-63196
0.003
1
6mer
163992-164003
0.003
9
7mer
209207-209225
0.003
2
8mer
265699-265719
0.003
2
7mer
59479-59491
0.003
6
7mer
172232-172247
0.003
3
7mer
183552-183565
0.003
3
7mer
13047-13058
0.003
3
7mer
25833-25857
0.003
2
8mer
233565-233579
0.003
1
8mer
98198-98222
0.003
1
6mer
166592-166616
0.003
5
7mer
102070-102085
0.003
2
7mer
34859-34881
0.002
2
7mer
190373-190396
0.002
Not Conserved
7mer
246783-246798
0.002
1
6mer
74748-74759
0.002
11
6mer
86440-86464
0.002
7
7mer
93519-93531
0.002
2
7mer
251620-251638
0.002
1
6mer
81514-81534
0.002
10
7mer
123868-123878
0.002
1
7mer
214087-214103
0.002
4
6mer
107250-107263
0.002
5
6mer
48028-48050
0.002
4
6mer
114031-114055
0.002
3
6mer
8343-8355
0.002
4
8mer+wobble
242430-242456
0.002
2
7mer
246474-246491
0.002
1
6mer
229646-229656
0.002
2
6mer
189776-189801
0.002
1
6mer
188523-188547
0.002
2
6mer
147637-147656
0.002
2
6mer
224924-224945
0.002
1
6mer
259628-259652
0.002
2
6mer
262248-262272
0.002
2
6mer
244219-244233
0.002
1
6mer
16740-16756
0.002
2
6mer
225221-225245
0.002
1
6mer
57951-57976
0.002
4
6mer
66407-66423
0.002
1
6mer
227517-227542
0.002
2
6mer
144695-144711
0.002
2
7mer
177489-177507
0.001
2
6mer
182854-182864
0.001
5
6mer
51029-51052
0.001
4
6mer
217364-217382
0.001
3
6mer
222267-222278
0.001
6
6mer
95886-95913
0.001
2
6mer
107058-107069
0.001
1
7mer
222700-222723
0.001
Not Conserved
6mer
266596-266618
0.001
1
6mer
87239-87262
0.001
1
7mer
160188-160204
0.001
Not Conserved
6mer
180219-180246
0.001
2
6mer
220233-220251
0.001
2
6mer
103544-103570
0.001
1
6mer
90920-90941
0.001
1
6mer
192624-192648
0.001
1
6mer
230262-230269
0.001
1
7mer
190064-190090
0.001
2
7mer
189952-189978
0.001
2
6mer
210165-210182
0.001
2
6mer
24280-24307
0.001
1
8mer
246901-246907
0.001
1
6mer
239821-239845
0.001
3
8mer+wobble
214598-214625
0.001
2
6mer
1391-1413
0.001
2
6mer
79177-79193
0.001
5
6mer
33260-33275
0.001
3
7mer
39587-39607
0.001
1
6mer
232896-232912
0.001
2
8mer+wobble
255073-255095
0.001
1
6mer
238940-238962
0.001
2
7mer
246810-246835
0.001
1
6mer
43397-43409
0.001
2
6mer
144067-144089
0.001
3
6mer
193081-193089
0.001
1
6mer
213667-213681
0.001
3
6mer
76894-76908
0.001
1
6mer
88200-88213
0.001
2
6mer
28754-28768
0.001
2
6mer
72674-72685
0.001
1
6mer
30323-30337
0.001
1
7mer
190149-190175
0.001
1
6mer
29576-29602
0.001
2
6mer
28362-28379
0.001
1
6mer
11597-11621
0.001
Not Conserved
7mer
189896-189922
0.001
1
7mer
190008-190034
0.001
1
6mer
123047-123070
0.001
1
6mer
39579-39589
0.001
1
6mer
46786-46801
0.001
1
6mer
260161-260177
0.001
2
7mer
240461-240473
0.001
2
6mer
149097-149109
0.001
2
6mer
117196-117208
0.001
1
6mer
250235-250251
0.001
1
6mer
177431-177446
0.001
2
6mer
228541-228557
0.001
2
6mer
130802-130823
0.001
2
6mer
9957-9972
0.001
Not Conserved
6mer
45209-45231
0.001
Not Conserved
6mer
71993-72011
0.001
2
7mer
190256-190262
0.001
2
7mer
189945-189951
0.001
1
7mer
190142-190148
0.001
1
7mer
190042-190063
0.001
1
6mer
208115-208139
0.001
2
7mer
189986-190007
0.001
1
7mer
190212-190233
0.001
1
6mer
39353-39369
0.001
2
6mer
74521-74540
0.001
2
6mer
4526-4547
0.001
1
6mer
235090-235113
0.001
1
6mer
175483-175497
0.001
Not Conserved
6mer
136837-136852
0.001
3
7mer
189869-189895
0.001
Not Conserved
6mer
260320-260335
0.001
2
6mer
218144-218167
0.001
2
6mer
59844-59870
0.001
4
6mer
10974-10992
0.001
2
7mer
190292-190318
0.001
Not Conserved
6mer
168802-168818
0.001
2
6mer
114407-114416
0.001
2
6mer
240571-240590
0.001
1
7mer
190113-190119
0.001
Not Conserved
7mer
190198-190204
0.001
Not Conserved
7mer
189862-189868
0.001
Not Conserved
6mer
130890-130908
0.001
3
8mer+wobble
39662-39679
0.001
2
6mer
190261-190284
0.001
1
8mer
255098-255113
0.001
Not Conserved
6mer
257638-257649
0.001
2
6mer
98096-98107
0.001
1
8mer+mismatch
239952-239970
0.001
1
6mer
63407-63420
0.001
1
8mer+mismatch
242617-242629
0.001
1
6mer
101453-101470
0.001
4
6mer
241640-241660
0.001
1
6mer
190034-190056
0.001
2
7mer
190319-190345
0.001
Not Conserved
6mer
153502-153529
0.001
2
6mer
189922-189944
0.001
2
6mer
124458-124480
0.001
2
6mer
221765-221789
0.001
2
6mer
206337-206354
0.001
Not Conserved
6mer
128780-128793
0.001
2
6mer
5660-5675
0.001
2
6mer
7534-7557
0.001
1
6mer
190175-190197
0.001
1
6mer
226014-226036
0.001
1
6mer
189808-189832
0.001
1
8mer+wobble
59890-59905
0.001
1
6mer
189978-190000
0.001
1
6mer
190119-190141
0.001
1
6mer
190204-190226
0.001
1
6mer
190090-190112
0.001
1
6mer
25938-25951
0.001
4
6mer
162645-162672
0.001
2
6mer
12283-12309
0.001
2
6mer
189839-189861
0.001
1
6mer
185724-185741
0.001
1
6mer
58046-58060
0.001
5
6mer
190233-190255
0.001
1
7mer
190347-190374
0.001
Not Conserved
6mer
174950-174968
0.001
1
6mer
11646-11665
0.001
2
6mer
222372-222385
0.001
3
6mer
16850-16867
0.001
2
6mer
72126-72136
0.001
2
7mer
239868-239890
0.001
1
6mer
59530-59540
0.001
3
6mer
209957-209982
0.001
2
6mer
217487-217504
0.001
1
6mer
46932-46953
0.001
1
6mer
235689-235712
0.001
1
6mer
190345-190367
0.001
1
6mer
253615-253632
0.001
1
6mer
78405-78424
0.001
2
6mer
265946-265961
0.000
1
6mer
213773-213791
0.000
2
6mer
79278-79295
0.000
2
6mer
227573-227588
0.000
2
6mer
103573-103594
0.000
2
6mer
255185-255197
0.000
2
6mer
45270-45287
0.000
1
6mer
241640-241665
0.000
2
6mer
255086-255103
0.000
2
KCNQ1OT1
hsa-miR-4287
1.000

Gene Details
Chromosome: 11
Transcript: ENST00000597346
Biotype: antisense
Gene id: ENSG00000269821
Gene Name: KCNQ1OT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
10304-10324
0.012
2
8mer
25843-25865
0.011
1
8mer
45249-45268
0.011
2
7mer
607-627
0.007
2
7mer
30501-30524
0.006
1
8mer
90404-90427
0.006
2
7mer
41113-41136
0.006
2
7mer
68827-68841
0.006
3
7mer
4541-4554
0.006
2
7mer
14294-14309
0.006
2
7mer
88391-88414
0.006
2
7mer
43964-43979
0.006
4
7mer
58461-58481
0.006
2
8mer
16024-16046
0.005
2
7mer
27474-27490
0.005
Not Conserved
7mer
42694-42712
0.005
2
7mer
601-618
0.005
1
7mer
69443-69469
0.005
2
7mer
2498-2509
0.004
2
7mer
37552-37564
0.004
1
7mer
35423-35433
0.004
1
7mer
18396-18414
0.004
2
9mer
74660-74681
0.003
1
7mer
72947-72960
0.003
2
7mer
44924-44947
0.003
2
6mer
91628-91639
0.002
Not Conserved
6mer
80956-80975
0.002
4
7mer
48760-48776
0.002
1
6mer
20248-20270
0.002
2
7mer
82077-82091
0.002
1
6mer
63803-63820
0.002
3
6mer
33909-33925
0.002
1
6mer
73338-73355
0.002
2
6mer
79607-79623
0.002
5
6mer
59827-59841
0.002
2
7mer
65758-65777
0.002
3
7mer
84996-85016
0.002
2
6mer
57622-57633
0.002
2
6mer
528-551
0.002
Not Conserved
6mer
81965-81983
0.002
5
6mer
63101-63118
0.002
2
6mer
48834-48850
0.002
2
8mer
45224-45242
0.002
1
6mer
41510-41529
0.002
2
7mer
73315-73340
0.001
2
6mer
43320-43334
0.001
3
6mer
22411-22421
0.001
2
6mer
74710-74735
0.001
2
6mer
19136-19159
0.001
2
6mer
27855-27872
0.001
1
6mer
75388-75402
0.001
2
6mer
44611-44624
0.001
3
6mer
73024-73037
0.001
4
6mer
55518-55543
0.001
3
6mer
58011-58024
0.001
3
6mer
83104-83125
0.001
3
6mer
54043-54059
0.001
1
6mer
67654-67669
0.001
2
7mer
63692-63718
0.001
2
6mer
65222-65232
0.001
3
8mer+wobble
45203-45219
0.001
3
6mer
56949-56975
0.001
2
6mer
73144-73166
0.001
4
6mer
72260-72280
0.001
1
6mer
12689-12706
0.001
1
6mer
60731-60746
0.001
2
6mer
87031-87052
0.001
2
6mer
47449-47470
0.001
2
6mer
71687-71705
0.001
2
6mer
56586-56605
0.001
6
6mer
66950-66972
0.001
1
6mer
14504-14525
0.001
2
6mer
66804-66820
0.001
2
6mer
50259-50269
0.001
1
6mer
83364-83389
0.001
2
6mer
77607-77629
0.001
3
6mer
84416-84427
0.001
1
6mer
79827-79839
0.001
2
6mer
84195-84216
0.001
3
6mer
75514-75531
0.001
1
6mer
18290-18311
0.001
2
6mer
56934-56944
0.001
3
6mer
65928-65944
0.001
2
6mer
68804-68819
0.001
2
6mer
86958-86984
0.001
1
6mer
83256-83275
0.000
1
6mer
63790-63816
0.000
2
6mer
63007-63025
0.000
2
6mer
73280-73295
0.000
1
6mer
63067-63081
0.000
2
XLOC_008329
hsa-miR-4287
1.000

Gene Details
Chromosome: chrY
Transcript: TCONS_00017592
Biotype: transcript isomorph
Gene id: XLOC_008329
Gene Name: XLOC_008329
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
59-86
0.187
1
RP11-509A17.3
hsa-miR-4287
1.000

Gene Details
Chromosome: 15
Transcript: ENST00000557528
Biotype: lincRNA
Gene id: ENSG00000258654
Gene Name: RP11-509A17.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
404-419
0.177
2
6mer
240-261
0.004
1
XLOC_006031
hsa-miR-4287
1.000

Gene Details
Chromosome: chr7
Transcript: TCONS_00012987
Biotype: transcript isomorph
Gene id: XLOC_006031
Gene Name: XLOC_006031
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
657-674
0.156
2
7mer
364-382
0.025
2
XLOC_013911
hsa-miR-4287
1.000

Gene Details
Chromosome: chr21
Transcript: TCONS_00028993
Biotype: transcript isomorph
Gene id: XLOC_013911
Gene Name: XLOC_013911
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Heart Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
183-202
0.181
2
XLOC_002214
hsa-miR-4287
1.000

Gene Details
Chromosome: chr2
Transcript: TCONS_00004339
Biotype: transcript isomorph
Gene id: XLOC_002214
Gene Name: XLOC_002214
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
172-184
0.055
2
7mer
1734-1746
0.047
2
7mer
1417-1437
0.031
2
7mer
1837-1847
0.020
1
6mer
1941-1966
0.012
2
6mer
1520-1539
0.009
2
6mer
436-463
0.005
1
6mer
1459-1476
0.002
1
XLOC_007257
hsa-miR-4287
1.000

Gene Details
Chromosome: chr8
Transcript: TCONS_00015198
Biotype: transcript isomorph
Gene id: XLOC_007257
Gene Name: XLOC_007257
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
152-164
0.179
2
XLOC_002216
hsa-miR-4287
1.000

Gene Details
Chromosome: chr2
Transcript: TCONS_00004342
Biotype: transcript isomorph
Gene id: XLOC_002216
Gene Name: XLOC_002216
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
17-37
0.056
2
7mer
317-340
0.051
2
7mer
119-142
0.049
2
7mer
214-241
0.021
1
6mer
256-282
0.002
Not Conserved
RP11-770G2.2
hsa-miR-4287
1.000

Gene Details
Chromosome: 11
Transcript: ENST00000534505
Biotype: lincRNA
Gene id: ENSG00000255557
Gene Name: RP11-770G2.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
167-180
0.177
2
RP11-680F20.10
hsa-miR-4287
1.000

Gene Details
Chromosome: 11
Transcript: ENST00000569238
Biotype: lincRNA
Gene id: ENSG00000260209
Gene Name: RP11-680F20.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
173-192
0.166
1
6mer
409-431
0.008
1
RP4-568C11.4
hsa-miR-4287
1.000

Gene Details
Chromosome: 20
Transcript: ENST00000620459
Biotype: lincRNA
Gene id: ENSG00000274173
Gene Name: RP4-568C11.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
424-442
0.159
1
CTD-2626G11.2
hsa-miR-4287
1.000

Gene Details
Chromosome: 19
Transcript: ENST00000593903
Biotype: lincRNA
Gene id: ENSG00000268416
Gene Name: CTD-2626G11.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
305-318
0.138
1
8mer
1803-1821
0.010
Not Conserved
7mer
7212-7237
0.003
Not Conserved
6mer
3631-3656
0.001
Not Conserved
6mer
7110-7127
0.001
Not Conserved
6mer
3588-3603
0.000
Not Conserved
RP11-680F20.10
hsa-miR-4287
1.000

Gene Details
Chromosome: 11
Transcript: ENST00000564354
Biotype: lincRNA
Gene id: ENSG00000260209
Gene Name: RP11-680F20.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
591-610
0.154
1
XLOC_012427
hsa-miR-4287
1.000

Gene Details
Chromosome: chr17
Transcript: TCONS_00025599
Biotype: transcript isomorph
Gene id: XLOC_012427
Gene Name: XLOC_012427
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
348-361
0.135
1
8mer
1832-1850
0.013
Not Conserved
6mer
3040-3055
0.002
Not Conserved
XLOC_014362
hsa-miR-4287
0.999

Gene Details
Chromosome: chr22
Transcript: TCONS_00029691
Biotype: transcript isomorph
Gene id: XLOC_014362
Gene Name: XLOC_014362
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
31-50
0.009
Not Conserved
7mer
9-28
0.009
Not Conserved
7mer
53-72
0.008
Not Conserved
7mer
75-94
0.008
Not Conserved
7mer
97-116
0.008
Not Conserved
7mer
119-138
0.008
Not Conserved
7mer
141-160
0.007
Not Conserved
7mer
175-195
0.007
Not Conserved
7mer
207-226
0.007
Not Conserved
7mer
185-204
0.006
Not Conserved
7mer
163-181
0.006
Not Conserved
7mer
229-244
0.006
Not Conserved
7mer
251-266
0.006
Not Conserved
7mer
273-288
0.005
Not Conserved
7mer
317-334
0.004
Not Conserved
7mer
362-381
0.004
Not Conserved
6mer
410-430
0.004
Not Conserved
8mer
344-361
0.003
Not Conserved
6mer
297-316
0.003
Not Conserved
6mer
309-324
0.002
Not Conserved
6mer
301-316
0.002
Not Conserved
6mer
305-316
0.002
Not Conserved
6mer
358-377
0.002
Not Conserved
6mer
340-357
0.002
Not Conserved
6mer
354-369
0.002
Not Conserved
AC006548.28
hsa-miR-4287
0.999

Gene Details
Chromosome: 22
Transcript: ENST00000623130
Biotype: sense_overlapping
Gene id: ENSG00000280156
Gene Name: AC006548.28
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
21817-21834
0.014
4
8mer
43693-43716
0.010
2
7mer
69710-69721
0.007
Not Conserved
8mer
42204-42215
0.006
1
8mer
19297-19314
0.006
2
8mer
83505-83523
0.005
2
6mer
84184-84205
0.003
2
6mer
84003-84019
0.003
2
7mer
8287-8303
0.003
1
8mer+wobble
2720-2737
0.002
1
7mer
19494-19517
0.002
4
7mer
2561-2572
0.002
Not Conserved
7mer
23577-23601
0.002
2
6mer
69950-69970
0.002
1
6mer
60985-60999
0.002
2
6mer
44214-44222
0.002
3
7mer
24837-24852
0.002
1
6mer
23710-23730
0.002
2
6mer
34174-34192
0.002
2
6mer
35601-35625
0.002
3
6mer
65846-65858
0.002
Not Conserved
6mer
43964-43977
0.002
2
9mer
19432-19458
0.001
2
6mer
77673-77697
0.001
1
6mer
35092-35112
0.001
2
7mer
6586-6606
0.001
1
6mer
57657-57664
0.001
1
6mer
18454-18477
0.001
2
8mer+wobble
9946-9960
0.001
2
6mer
18228-18245
0.001
2
6mer
38446-38463
0.001
3
6mer
54226-54250
0.001
Not Conserved
6mer
13155-13167
0.001
2
6mer
41852-41870
0.001
2
6mer
68986-68997
0.001
Not Conserved
6mer
28580-28604
0.001
1
7mer
11600-11623
0.001
1
6mer
65095-65110
0.001
2
6mer
25550-25573
0.001
2
6mer
17449-17461
0.001
2
6mer
63151-63171
0.001
2
6mer
20753-20765
0.001
2
6mer
11797-11816
0.001
1
6mer
22194-22207
0.001
3
6mer
12063-12081
0.001
5
6mer
20416-20428
0.001
1
6mer
45439-45450
0.001
Not Conserved
6mer
10801-10821
0.001
2
6mer
6664-6680
0.001
2
6mer
21557-21573
0.001
1
6mer
13005-13020
0.001
2
7mer
11781-11799
0.001
1
6mer
59762-59774
0.001
2
7mer
60848-60864
0.001
1
6mer
14366-14390
0.001
2
6mer
3689-3698
0.001
1
6mer
13590-13612
0.001
1
6mer
18170-18194
0.001
2
6mer
11612-11623
0.001
1
6mer
51787-51801
0.001
Not Conserved
6mer
5835-5856
0.001
2
6mer
65572-65585
0.001
1
6mer
11447-11461
0.001
1
6mer
64161-64179
0.001
2
6mer
39858-39881
0.001
2
6mer
38413-38437
0.001
2
6mer
46726-46750
0.000
Not Conserved
6mer
60800-60819
0.000
2
6mer
23679-23700
0.000
2
6mer
11788-11799
0.000
1
6mer
45351-45367
0.000
Not Conserved
6mer
60719-60740
0.000
2
6mer
24834-24852
0.000
1
6mer
65564-65585
0.000
1
XLOC_012370
hsa-miR-4287
0.999

Gene Details
Chromosome: chr17
Transcript: TCONS_00025543
Biotype: transcript isomorph
Gene id: XLOC_012370
Gene Name: XLOC_012370
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
432-455
0.120
1
MIR6818
hsa-miR-4287
0.999

Gene Details
Chromosome: 22
Transcript: ENST00000624945
Biotype: antisense
Gene id: ENSG00000279159
Gene Name: MIR6818
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
124-135
0.017
3
8mer
25472-25482
0.014
3
7mer
26982-26995
0.007
2
8mer+wobble
44493-44514
0.007
9
8mer
43001-43022
0.006
Not Conserved
8mer
8730-8736
0.006
1
7mer
10172-10183
0.005
1
7mer
36858-36877
0.005
1
7mer
31503-31514
0.004
1
7mer
8924-8944
0.004
2
7mer
24968-24982
0.004
3
6mer
49124-49144
0.003
2
7mer
28934-28958
0.002
1
7mer
47379-47396
0.002
2
6mer
41900-41923
0.002
8
8mer+wobble
47961-47976
0.002
2
7mer
9166-9174
0.002
2
6mer
11720-11741
0.002
2
6mer
48222-48245
0.002
5
7mer
23882-23899
0.002
2
6mer
44130-44146
0.001
3
6mer
34891-34909
0.001
2
6mer
18385-18406
0.001
8
6mer
4474-4490
0.001
1
6mer
36573-36585
0.001
Not Conserved
6mer
7822-7838
0.001
Not Conserved
6mer
43387-43405
0.001
2
6mer
46517-46541
0.001
2
6mer
23905-23923
0.001
2
6mer
35862-35882
0.001
1
6mer
28380-28396
0.001
2
6mer
3459-3473
0.001
1
6mer
35667-35683
0.001
1
6mer
47035-47045
0.001
1
6mer
31970-31991
0.001
1
6mer
44434-44451
0.001
5
6mer
26702-26721
0.001
3
6mer
35806-35817
0.001
1
6mer
9104-9115
0.001
1
6mer
42890-42910
0.001
3
6mer
36541-36556
0.000
Not Conserved
6mer
47032-47046
0.000
1
6mer
36569-36580
0.000
Not Conserved
6mer
36557-36572
0.000
Not Conserved
6mer
36545-36560
0.000
Not Conserved
6mer
36549-36567
0.000
Not Conserved
6mer
36553-36567
0.000
Not Conserved
ALMS1-IT1
hsa-miR-4287
0.999

Gene Details
Chromosome: 2
Transcript: NR_046762.1
Biotype: sense
Gene id: NR_046762.1 (gene)
Gene Name: ALMS1-IT1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1050-1063
0.043
2
7mer
289-307
0.020
2
7mer
1644-1664
0.019
1
7mer
840-852
0.015
2
7mer
987-1008
0.011
2
7mer
1006-1026
0.010
2
Funded by: