Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
You can download the LncBase v2 Prediction Module data with a 0.6 threshold through this link

hsa-miR-4287

Loading... Please wait, this might take a few seconds...



Filters

Gene
miRNA
Score
AC004076.5
hsa-miR-4287
0.940

Gene Details
Chromosome: 19
Transcript: ENST00000620532
Biotype: antisense
Gene id: ENSG00000276449
Gene Name: AC004076.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2923-2949
0.032
2
8mer
575-588
0.011
1
7mer
526-540
0.010
2
6mer
731-757
0.002
1
ZNF32-AS2
hsa-miR-4287
0.940

Gene Details
Chromosome: 10
Transcript: ENST00000418966
Biotype: antisense
Gene id: ENSG00000230565
Gene Name: ZNF32-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
778-803
0.043
1
7mer
258-270
0.012
1
NEAT1
hsa-miR-4287
0.940

Gene Details
Chromosome: 11
Transcript: ENST00000501122
Biotype: lincRNA
Gene id: ENSG00000245532
Gene Name: NEAT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
64-88
0.009
1
7mer
334-352
0.007
2
7mer
4490-4510
0.006
5
7mer
11668-11688
0.005
4
7mer
22376-22400
0.004
2
6mer
22369-22396
0.003
2
7mer
19191-19206
0.003
1
6mer
22609-22635
0.002
4
6mer
22608-22631
0.002
3
6mer
22608-22627
0.002
2
7mer
2504-2518
0.002
1
6mer
1175-1197
0.002
2
6mer
13344-13368
0.001
2
8mer
4505-4522
0.001
2
6mer
3230-3251
0.001
1
6mer
17724-17749
0.001
2
6mer
6477-6494
0.001
2
6mer
16633-16648
0.001
Not Conserved
6mer
4745-4758
0.001
1
6mer
2065-2091
0.001
Not Conserved
RP11-714L20.1
hsa-miR-4287
0.940

Gene Details
Chromosome: 4
Transcript: ENST00000507365
Biotype: lincRNA
Gene id: ENSG00000251632
Gene Name: RP11-714L20.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lymph Node Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1754-1773
0.049
3
6mer
337-354
0.003
1
6mer
1576-1596
0.002
1
6mer
415-423
0.002
2
XLOC_008777
hsa-miR-4287
0.940

Gene Details
Chromosome: chr10
Transcript: TCONS_00017951
Biotype: transcript isomorph
Gene id: XLOC_008777
Gene Name: XLOC_008777
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
357-374
0.026
2
8mer
784-806
0.025
1
6mer
256-268
0.005
2
XLOC_013637
hsa-miR-4287
0.939

Gene Details
Chromosome: chr20
Transcript: TCONS_00028298
Biotype: transcript isomorph
Gene id: XLOC_013637
Gene Name: XLOC_013637
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
581-596
0.052
2
6mer
1188-1208
0.004
1
RP1-309I22.2
hsa-miR-4287
0.939

Gene Details
Chromosome: 22
Transcript: ENST00000624184
Biotype: sense_overlapping
Gene id: ENSG00000279338
Gene Name: RP1-309I22.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
20906-20921
0.006
1
7mer
9638-9665
0.004
3
8mer
2536-2551
0.003
3
7mer
21025-21038
0.003
2
8mer+wobble
801-817
0.003
2
7mer
12880-12900
0.002
1
6mer
4528-4551
0.002
3
7mer
23998-24020
0.002
3
6mer
12350-12367
0.002
4
6mer
23238-23262
0.002
6
6mer
16038-16051
0.002
2
7mer
14133-14149
0.002
2
6mer
25633-25657
0.001
3
6mer
6839-6849
0.001
2
6mer
4936-4951
0.001
1
7mer
13853-13868
0.001
2
6mer
1050-1058
0.001
1
6mer
9169-9179
0.001
3
6mer
14383-14393
0.001
6
6mer
2358-2382
0.001
2
6mer
18070-18096
0.001
1
6mer
24630-24648
0.001
2
6mer
3377-3396
0.001
2
6mer
5975-5988
0.001
2
6mer
3848-3864
0.001
1
6mer
820-834
0.001
2
7mer
4981-5000
0.001
1
6mer
7513-7528
0.001
Not Conserved
8mer
12378-12396
0.001
1
6mer
15792-15803
0.001
1
6mer
13831-13856
0.001
1
6mer
2579-2602
0.001
4
6mer
7689-7706
0.001
2
6mer
16294-16311
0.001
3
6mer
12950-12973
0.001
2
6mer
13893-13908
0.000
2
6mer
12990-13007
0.000
3
6mer
5985-6000
0.000
2
RP11-403B2.6
hsa-miR-4287
0.939

Gene Details
Chromosome: 15
Transcript: ENST00000559621
Biotype: lincRNA
Gene id: ENSG00000259383
Gene Name: RP11-403B2.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
595-621
0.055
1
RP11-158H5.8
hsa-miR-4287
0.938

Gene Details
Chromosome: 18
Transcript: ENST00000618230
Biotype: lincRNA
Gene id: ENSG00000274184
Gene Name: RP11-158H5.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
801-820
0.037
1
8mer
214-235
0.015
1
6mer
305-322
0.004
2
RP11-673P17.4
hsa-miR-4287
0.938

Gene Details
Chromosome: 16
Transcript: ENST00000564381
Biotype: lincRNA
Gene id: ENSG00000261045
Gene Name: RP11-673P17.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
535-549
0.055
2
XLOC_011157
hsa-miR-4287
0.938

Gene Details
Chromosome: chr15
Transcript: TCONS_00023287
Biotype: transcript isomorph
Gene id: XLOC_011157
Gene Name: XLOC_011157
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2966-2982
0.053
2
6mer
463-479
0.003
1
DYX1C1-CCPG1
hsa-miR-4287
0.938

Gene Details
Chromosome: 15
Transcript: ENST00000568310
Biotype: processed_transcript
Gene id: ENSG00000261771
Gene Name: DYX1C1-CCPG1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
641-655
0.049
4
6mer
1030-1047
0.006
9
FAM27C
hsa-miR-4287
0.937

Gene Details
Chromosome: 9
Transcript: NR_027421.1
Biotype: sense
Gene id: NR_027421.1 (gene)
Gene Name: FAM27C
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
678-691
0.055
1
XLOC_013024
hsa-miR-4287
0.937

Gene Details
Chromosome: chr19
Transcript: TCONS_00026972
Biotype: transcript isomorph
Gene id: XLOC_013024
Gene Name: XLOC_013024
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
159-174
0.033
1
6mer
13-39
0.011
1
6mer
327-349
0.011
1
RP11-631M21.1
hsa-miR-4287
0.936

Gene Details
Chromosome: 10
Transcript: ENST00000562162
Biotype: lincRNA
Gene id: ENSG00000260370
Gene Name: RP11-631M21.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
224-242
0.055
1
RP1-287H17.1
hsa-miR-4287
0.935

Gene Details
Chromosome: 6
Transcript: ENST00000447557
Biotype: lincRNA
Gene id: ENSG00000236389
Gene Name: RP1-287H17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
889-909
0.016
2
8mer
318-337
0.014
1
7mer
895-909
0.011
2
6mer
865-880
0.006
2
6mer
871-880
0.005
2
6mer
256-269
0.003
1
AC007277.3
hsa-miR-4287
0.935

Gene Details
Chromosome: 2
Transcript: ENST00000423519
Biotype: antisense
Gene id: ENSG00000213981
Gene Name: AC007277.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1004-1026
0.044
3
7mer
464-488
0.005
1
6mer
989-1005
0.005
5
MEG3
hsa-miR-4287
0.935

Gene Details
Chromosome: 14
Transcript: ENST00000522771
Biotype: lincRNA
Gene id: ENSG00000214548
Gene Name: MEG3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4151-4167
0.024
4
8mer
1109-1126
0.007
1
7mer
5999-6016
0.006
1
6mer
6738-6750
0.004
2
6mer
6332-6352
0.003
2
8mer+wobble
462-484
0.003
3
6mer
6453-6464
0.003
Not Conserved
6mer
5741-5753
0.003
4
6mer
5477-5502
0.002
5
LINC00938
hsa-miR-4287
0.935

Gene Details
Chromosome: 12
Transcript: ENST00000609803
Biotype: lincRNA
Gene id: ENSG00000273015
Gene Name: LINC00938
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
723-740
0.030
2
7mer
9244-9266
0.013
2
7mer
4641-4657
0.005
2
7mer
2134-2160
0.004
1
7mer
6288-6305
0.003
1
6mer
3445-3458
0.001
1
RP11-18F14.4
hsa-miR-4287
0.935

Gene Details
Chromosome: 16
Transcript: ENST00000563684
Biotype: sense_intronic
Gene id: ENSG00000260064
Gene Name: RP11-18F14.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
624-645
0.029
2
8mer
566-585
0.021
2
6mer
573-594
0.005
3
Funded by: