Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
You can download the LncBase v2 Prediction Module data with a 0.6 threshold through this link

hsa-miR-4287

Loading... Please wait, this might take a few seconds...



Filters

Gene
miRNA
Score
ALMS1-IT1
hsa-miR-4287
0.992

Gene Details
Chromosome: 2
Transcript: ENST00000441587
Biotype: sense_intronic
Gene id: ENSG00000230002
Gene Name: ALMS1-IT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1389-1402
0.031
2
7mer
1983-2003
0.020
1
7mer
628-646
0.011
2
7mer
1179-1191
0.010
2
7mer
1326-1347
0.009
2
7mer
1345-1365
0.008
2
FAM95B1
hsa-miR-4287
0.992

Gene Details
Chromosome: 9
Transcript: ENST00000593216
Biotype: lincRNA
Gene id: ENSG00000223839
Gene Name: FAM95B1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
729-750
0.056
1
6mer
694-714
0.017
1
6mer
694-717
0.016
1
XLOC_007089
hsa-miR-4287
0.992

Gene Details
Chromosome: chr8
Transcript: TCONS_00015015
Biotype: transcript isomorph
Gene id: XLOC_007089
Gene Name: XLOC_007089
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3070-3088
0.028
1
7mer
1110-1126
0.024
2
8mer
8424-8442
0.023
1
6mer
713-723
0.005
1
6mer
8183-8200
0.005
2
8mer+wobble
6226-6240
0.002
Not Conserved
6mer
9922-9939
0.001
Not Conserved
6mer
4867-4880
0.001
Not Conserved
6mer
6068-6088
0.001
Not Conserved
XLOC_012069
hsa-miR-4287
0.991

Gene Details
Chromosome: chr17
Transcript: TCONS_00025799
Biotype: transcript isomorph
Gene id: XLOC_012069
Gene Name: XLOC_012069
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
99-115
0.011
2
7mer
465-483
0.010
1
7mer
372-390
0.009
1
7mer
419-437
0.008
1
7mer
512-531
0.008
Not Conserved
7mer
191-209
0.007
Not Conserved
7mer
237-256
0.006
Not Conserved
6mer
51-69
0.005
1
6mer
84-100
0.005
2
6mer
31-43
0.004
1
6mer
144-162
0.004
1
6mer
216-232
0.003
Not Conserved
6mer
435-457
0.003
1
6mer
122-138
0.003
Not Conserved
6mer
263-278
0.002
Not Conserved
RP11-180C1.1
hsa-miR-4287
0.991

Gene Details
Chromosome: 4
Transcript: ENST00000515720
Biotype: lincRNA
Gene id: ENSG00000250038
Gene Name: RP11-180C1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
12-26
0.088
3
SLX1B-SULT1A4
hsa-miR-4287
0.991

Gene Details
Chromosome: 16
Transcript: ENST00000395400
Biotype: retained_intron
Gene id: ENSG00000260280
Gene Name: SLX1B-SULT1A4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1995-2013
0.081
7
6mer
2304-2321
0.003
2
6mer
1319-1338
0.003
6
XLOC_002488
hsa-miR-4287
0.991

Gene Details
Chromosome: chr2
Transcript: TCONS_00004577
Biotype: transcript isomorph
Gene id: XLOC_002488
Gene Name: XLOC_002488
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
267-287
0.058
2
7mer
1626-1643
0.012
2
7mer
179-196
0.011
3
6mer
632-654
0.004
3
7mer
573-582
0.002
1
CTD-2525I3.3
hsa-miR-4287
0.990

Gene Details
Chromosome: 19
Transcript: ENST00000599125
Biotype: antisense
Gene id: ENSG00000268015
Gene Name: CTD-2525I3.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
537-557
0.083
2
6mer
296-311
0.004
2
RP11-445O3.3
hsa-miR-4287
0.990

Gene Details
Chromosome: 5
Transcript: ENST00000562127
Biotype: lincRNA
Gene id: ENSG00000260763
Gene Name: RP11-445O3.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1113-1139
0.061
1
7mer
780-794
0.025
1
XLOC_008394
hsa-miR-4287
0.990

Gene Details
Chromosome: chr10
Transcript: TCONS_00018124
Biotype: transcript isomorph
Gene id: XLOC_008394
Gene Name: XLOC_008394
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
173-194
0.040
2
7mer
322-339
0.032
3
7mer
158-183
0.015
2
XLOC_000136
hsa-miR-4287
0.989

Gene Details
Chromosome: chr1
Transcript: TCONS_00000886
Biotype: transcript isomorph
Gene id: XLOC_000136
Gene Name: XLOC_000136
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
165-181
0.072
5
7mer
139-153
0.012
4
AC097467.2
hsa-miR-4287
0.988

Gene Details
Chromosome: 4
Transcript: ENST00000599555
Biotype: antisense
Gene id: ENSG00000250910
Gene Name: AC097467.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1183-1203
0.083
4
LINC01135
hsa-miR-4287
0.988

Gene Details
Chromosome: 1
Transcript: ENST00000419531
Biotype: lincRNA
Gene id: ENSG00000234807
Gene Name: LINC01135
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
238-256
0.065
7
7mer
927-944
0.013
2
7mer
605-619
0.005
2
XLOC_005302
hsa-miR-4287
0.988

Gene Details
Chromosome: chr6
Transcript: TCONS_00011819
Biotype: transcript isomorph
Gene id: XLOC_005302
Gene Name: XLOC_005302
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
78-94
0.044
1
8mer
50-74
0.026
3
8mer
3688-3712
0.004
1
6mer
4261-4276
0.003
2
6mer
2352-2364
0.003
5
6mer
1991-2013
0.002
4
LL22NC03-86G7.1
hsa-miR-4287
0.987

Gene Details
Chromosome: 22
Transcript: ENST00000458178
Biotype: antisense
Gene id: ENSG00000224086
Gene Name: LL22NC03-86G7.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
31268-31291
0.009
2
7mer
7714-7731
0.005
1
7mer
24248-24257
0.004
4
6mer
108-134
0.003
5
7mer
4546-4566
0.003
2
7mer
1982-1998
0.003
2
7mer
31941-31961
0.003
2
8mer+wobble
6787-6803
0.002
1
7mer
30365-30389
0.002
2
6mer
27652-27671
0.002
1
8mer
17135-17150
0.002
3
6mer
6327-6336
0.002
6
6mer
11595-11600
0.002
Not Conserved
7mer
20474-20492
0.002
3
8mer+wobble
2305-2322
0.002
1
6mer
17096-17116
0.002
2
6mer
16498-16511
0.001
2
8mer+mismatch
2678-2694
0.001
4
6mer
8817-8843
0.001
2
6mer
7993-8005
0.001
2
6mer
15719-15734
0.001
2
6mer
5666-5691
0.001
1
6mer
5456-5481
0.001
1
6mer
18443-18454
0.001
2
6mer
4703-4721
0.001
2
6mer
29139-29161
0.001
2
6mer
33754-33779
0.001
4
6mer
18208-18231
0.001
Not Conserved
6mer
6697-6717
0.001
1
6mer
11386-11405
0.001
2
8mer+wobble
21154-21179
0.001
1
6mer
20397-20417
0.001
2
6mer
17813-17825
0.001
3
6mer
28990-29004
0.001
2
7mer
17159-17174
0.001
Not Conserved
6mer
9778-9802
0.001
2
6mer
31596-31611
0.001
Not Conserved
6mer
17309-17323
0.001
2
6mer
31013-31029
0.001
2
6mer
18684-18697
0.001
2
6mer
16778-16804
0.001
1
6mer
22011-22027
0.001
2
6mer
27693-27720
0.001
1
6mer
2782-2807
0.001
1
6mer
2863-2888
0.001
6
8mer+wobble
31347-31366
0.001
2
6mer
9210-9223
0.001
1
6mer
20780-20797
0.001
1
6mer
29221-29234
0.001
3
7mer
17813-17831
0.000
1
6mer
12605-12627
0.000
1
7mer
9793-9810
0.000
Not Conserved
6mer
9793-9819
0.000
2
6mer
31332-31347
0.000
2
6mer
20477-20502
0.000
2
RP11-20B24.5
hsa-miR-4287
0.987

Gene Details
Chromosome: 17
Transcript: ENST00000580782
Biotype: antisense
Gene id: ENSG00000265845
Gene Name: RP11-20B24.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
149-167
0.082
3
XLOC_005332
hsa-miR-4287
0.987

Gene Details
Chromosome: chr6
Transcript: TCONS_00011845
Biotype: transcript isomorph
Gene id: XLOC_005332
Gene Name: XLOC_005332
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
212-235
0.040
2
7mer
1148-1163
0.038
2
6mer
323-334
0.004
1
CTB-89H12.4
hsa-miR-4287
0.987

Gene Details
Chromosome: 5
Transcript: ENST00000499521
Biotype: retained_intron
Gene id: ENSG00000230551
Gene Name: CTB-89H12.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
21-41
0.071
10
6mer
101-127
0.007
10
6mer
5688-5710
0.002
2
6mer
6582-6598
0.001
1
LINC00466
hsa-miR-4287
0.986

Gene Details
Chromosome: 1
Transcript: ENST00000418086
Biotype: lincRNA
Gene id: ENSG00000224209
Gene Name: LINC00466
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
56-80
0.081
2
SLX1B-SULT1A4
hsa-miR-4287
0.986

Gene Details
Chromosome: 16
Transcript: ENST00000564950
Biotype: retained_intron
Gene id: ENSG00000260280
Gene Name: SLX1B-SULT1A4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1540-1558
0.065
7
7mer
235-245
0.009
2
6mer
864-883
0.003
6
6mer
1849-1866
0.003
2
Funded by: