Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
You can download the LncBase v2 Prediction Module data with a 0.6 threshold through this link

hsa-miR-4287

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Filters

Gene
miRNA
Score
SLX1B-SULT1A4
hsa-miR-4287
0.986

Gene Details
Chromosome: 16
Transcript: NR_037609.1
Biotype: sense
Gene id: NR_037609.1 (gene)
Gene Name: SLX1B-SULT1A4
UCSC graphic: -
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1512-1530
0.065
7
7mer
301-311
0.009
2
6mer
836-855
0.004
6
6mer
1821-1838
0.003
2
RP4-806M20.5
hsa-miR-4287
0.983

Gene Details
Chromosome: 20
Transcript: ENST00000603095
Biotype: lincRNA
Gene id: ENSG00000270279
Gene Name: RP4-806M20.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1323-1335
0.077
7
XLOC_013276
hsa-miR-4287
0.982

Gene Details
Chromosome: chr19
Transcript: TCONS_00027716
Biotype: transcript isomorph
Gene id: XLOC_013276
Gene Name: XLOC_013276
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1159-1185
0.058
1
6mer
809-826
0.012
1
6mer
491-509
0.003
Not Conserved
6mer
410-430
0.002
Not Conserved
XLOC_013278
hsa-miR-4287
0.981

Gene Details
Chromosome: chr19
Transcript: TCONS_00027248
Biotype: transcript isomorph
Gene id: XLOC_013278
Gene Name: XLOC_013278
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Colon Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
114-137
0.065
1
6mer
258-275
0.010
1
LINC01034
hsa-miR-4287
0.981

Gene Details
Chromosome: 13
Transcript: ENST00000448806
Biotype: lincRNA
Gene id: ENSG00000224933
Gene Name: LINC01034
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
181-196
0.031
2
8mer
247-259
0.030
2
7mer
157-171
0.014
2
AC226118.1
hsa-miR-4287
0.981

Gene Details
Chromosome: 7
Transcript: ENST00000515213
Biotype: lincRNA
Gene id: ENSG00000249574
Gene Name: AC226118.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1977-1991
0.024
1
7mer
1960-1971
0.010
1
7mer
1900-1924
0.009
1
7mer
1937-1955
0.009
1
7mer
1917-1936
0.006
1
6mer
1911-1928
0.004
1
6mer
1949-1967
0.004
1
6mer
1929-1943
0.003
Not Conserved
6mer
1991-2002
0.003
1
6mer
1991-2006
0.002
1
6mer
1008-1023
0.001
2
AC097467.2
hsa-miR-4287
0.981

Gene Details
Chromosome: 4
Transcript: ENST00000610249
Biotype: antisense
Gene id: ENSG00000250910
Gene Name: AC097467.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
697-717
0.075
4
RP11-109E12.1
hsa-miR-4287
0.980

Gene Details
Chromosome: 2
Transcript: ENST00000609270
Biotype: lincRNA
Gene id: ENSG00000273073
Gene Name: RP11-109E12.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
177-191
0.075
2
XLOC_009511
hsa-miR-4287
0.980

Gene Details
Chromosome: chr11
Transcript: TCONS_00020103
Biotype: transcript isomorph
Gene id: XLOC_009511
Gene Name: XLOC_009511
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1151-1172
0.047
1
7mer
808-826
0.025
1
6mer
1075-1101
0.002
Not Conserved
RP11-267L5.1
hsa-miR-4287
0.980

Gene Details
Chromosome: 8
Transcript: ENST00000523682
Biotype: lincRNA
Gene id: ENSG00000254339
Gene Name: RP11-267L5.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
735-759
0.071
2
6mer
102-120
0.003
1
XLOC_010949
hsa-miR-4287
0.980

Gene Details
Chromosome: chr14
Transcript: TCONS_00022645
Biotype: transcript isomorph
Gene id: XLOC_010949
Gene Name: XLOC_010949
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
67-80
0.042
2
7mer
172-199
0.014
1
8mer+wobble
231-246
0.006
1
6mer
283-308
0.005
1
6mer
89-103
0.004
1
6mer
171-195
0.003
1
CTD-2371O3.3
hsa-miR-4287
0.979

Gene Details
Chromosome: 11
Transcript: ENST00000596206
Biotype: antisense
Gene id: ENSG00000268403
Gene Name: CTD-2371O3.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
HeLa Cervix Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
930-956
0.025
2
7mer
256-275
0.020
1
6mer
1114-1141
0.010
9
8mer+wobble
1118-1142
0.009
6
6mer
1086-1096
0.006
8
6mer
686-696
0.002
1
6mer
556-579
0.002
1
DISC1FP1
hsa-miR-4287
0.979

Gene Details
Chromosome: 11
Transcript: ENST00000569513
Biotype: retained_intron
Gene id: ENSG00000261645
Gene Name: DISC1FP1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1608-1624
0.029
2
8mer
1704-1722
0.028
1
7mer
1695-1710
0.008
Not Conserved
7mer
1691-1702
0.006
1
6mer
1691-1706
0.003
Not Conserved
CTC-459F4.3
hsa-miR-4287
0.978

Gene Details
Chromosome: 19
Transcript: ENST00000588784
Biotype: lincRNA
Gene id: ENSG00000267575
Gene Name: CTC-459F4.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
116-139
0.017
1
6mer
136-159
0.016
1
6mer
96-119
0.013
1
7mer
156-180
0.010
Not Conserved
6mer
443-455
0.007
1
7mer
919-945
0.005
Not Conserved
6mer
788-815
0.005
1
TSIX
hsa-miR-4287
0.978

Gene Details
Chromosome: X
Transcript: ENST00000604411
Biotype: lincRNA
Gene id: ENSG00000270641
Gene Name: TSIX
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
16912-16928
0.008
Not Conserved
8mer
4942-4968
0.007
1
7mer
35143-35161
0.007
2
8mer
9349-9367
0.007
1
7mer
5460-5487
0.005
2
8mer
16552-16578
0.005
1
7mer
13213-13230
0.005
Not Conserved
6mer
33795-33814
0.003
8
7mer
7392-7406
0.002
1
7mer
12540-12563
0.002
Not Conserved
7mer
16965-16988
0.002
Not Conserved
6mer
25268-25287
0.002
2
6mer
23081-23102
0.002
3
6mer
3002-3021
0.002
3
6mer
12759-12779
0.001
Not Conserved
6mer
27181-27206
0.001
1
7mer
11544-11558
0.001
Not Conserved
6mer
22060-22078
0.001
2
6mer
10789-10806
0.001
1
6mer
13516-13531
0.001
Not Conserved
6mer
11796-11816
0.001
Not Conserved
6mer
9751-9777
0.001
1
6mer
14534-14558
0.001
Not Conserved
6mer
10254-10272
0.001
1
6mer
13743-13763
0.001
Not Conserved
7mer
12784-12805
0.001
Not Conserved
6mer
14698-14725
0.001
Not Conserved
6mer
13551-13568
0.000
Not Conserved
6mer
25366-25393
0.000
1
6mer
27218-27225
0.000
2
AC097467.2
hsa-miR-4287
0.978

Gene Details
Chromosome: 4
Transcript: ENST00000595229
Biotype: antisense
Gene id: ENSG00000250910
Gene Name: AC097467.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
731-751
0.073
4
RP11-267L5.1
hsa-miR-4287
0.978

Gene Details
Chromosome: 8
Transcript: ENST00000521523
Biotype: lincRNA
Gene id: ENSG00000254339
Gene Name: RP11-267L5.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
771-795
0.070
2
6mer
104-122
0.003
1
RP11-267L5.1
hsa-miR-4287
0.978

Gene Details
Chromosome: 8
Transcript: ENST00000520543
Biotype: lincRNA
Gene id: ENSG00000254339
Gene Name: RP11-267L5.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
750-774
0.070
2
6mer
98-116
0.003
1
XLOC_012737
hsa-miR-4287
0.976

Gene Details
Chromosome: chr18
Transcript: TCONS_00026387
Biotype: transcript isomorph
Gene id: XLOC_012737
Gene Name: XLOC_012737
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Liver Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
494-512
0.072
1
RP11-59D5__B.2
hsa-miR-4287
0.976

Gene Details
Chromosome: 6
Transcript: ENST00000429530
Biotype: antisense
Gene id: ENSG00000236345
Gene Name: RP11-59D5__B.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1379-1389
0.068
3
6mer
334-352
0.003
1
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