Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
You can download the LncBase v2 Prediction Module data with a 0.6 threshold through this link

hsa-miR-4287

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Filters

Gene
miRNA
Score
RP1-315G1.3
hsa-miR-4287
0.976

Gene Details
Chromosome: X
Transcript: ENST00000426367
Biotype: lincRNA
Gene id: ENSG00000232412
Gene Name: RP1-315G1.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
262-277
0.068
6
6mer
131-152
0.004
3
RP11-127O4.3
hsa-miR-4287
0.976

Gene Details
Chromosome: 10
Transcript: ENST00000447860
Biotype: lincRNA
Gene id: ENSG00000225768
Gene Name: RP11-127O4.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
909-927
0.072
5
RP11-91I8.1
hsa-miR-4287
0.976

Gene Details
Chromosome: 18
Transcript: ENST00000563503
Biotype: lincRNA
Gene id: ENSG00000261627
Gene Name: RP11-91I8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
138-164
0.071
2
XLOC_005539
hsa-miR-4287
0.976

Gene Details
Chromosome: chr6
Transcript: TCONS_00012016
Biotype: transcript isomorph
Gene id: XLOC_005539
Gene Name: XLOC_005539
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
415-428
0.014
1
6mer
129-151
0.005
1
8mer
2232-2250
0.004
Not Conserved
6mer
269-286
0.004
Not Conserved
7mer
703-724
0.004
Not Conserved
8mer
2256-2277
0.003
1
7mer
1396-1422
0.003
1
7mer
544-563
0.003
Not Conserved
7mer
1017-1034
0.003
Not Conserved
7mer
2985-2999
0.003
1
7mer
1193-1209
0.002
Not Conserved
6mer
211-233
0.002
Not Conserved
6mer
523-536
0.002
1
6mer
386-402
0.002
1
7mer
1928-1946
0.002
1
6mer
620-643
0.002
Not Conserved
6mer
435-455
0.001
Not Conserved
6mer
927-953
0.001
1
6mer
2453-2468
0.001
1
6mer
1649-1663
0.001
1
6mer
756-781
0.001
Not Conserved
6mer
814-837
0.001
Not Conserved
6mer
926-940
0.001
Not Conserved
6mer
1824-1838
0.001
1
6mer
1649-1676
0.001
1
6mer
1279-1290
0.001
1
6mer
1296-1317
0.001
1
6mer
1467-1480
0.001
1
6mer
2011-2029
0.001
1
6mer
1871-1892
0.001
1
6mer
2146-2167
0.001
Not Conserved
6mer
1433-1451
0.000
Not Conserved
6mer
1961-1973
0.000
1
AC007128.1
hsa-miR-4287
0.976

Gene Details
Chromosome: 7
Transcript: ENST00000424460
Biotype: antisense
Gene id: ENSG00000229970
Gene Name: AC007128.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1108-1125
0.061
9
7mer
1667-1682
0.010
2
XLOC_013543
hsa-miR-4287
0.976

Gene Details
Chromosome: chr20
Transcript: TCONS_00028193
Biotype: transcript isomorph
Gene id: XLOC_013543
Gene Name: XLOC_013543
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
236-249
0.013
2
6mer
3961-3972
0.006
2
8mer+wobble
117-144
0.005
1
6mer
3552-3570
0.004
1
6mer
437-456
0.003
2
7mer
633-652
0.003
1
6mer
3662-3675
0.003
1
6mer
331-358
0.003
Not Conserved
6mer
3765-3777
0.003
1
6mer
690-698
0.002
2
6mer
535-554
0.002
2
6mer
584-603
0.002
Not Conserved
6mer
497-505
0.002
Not Conserved
6mer
1082-1090
0.002
1
6mer
777-796
0.001
1
6mer
1858-1876
0.001
Not Conserved
6mer
3128-3141
0.001
Not Conserved
7mer
2478-2491
0.001
Not Conserved
6mer
1112-1139
0.001
2
6mer
3237-3250
0.001
Not Conserved
6mer
2675-2687
0.001
Not Conserved
6mer
924-943
0.001
1
6mer
826-845
0.001
1
6mer
3019-3032
0.001
Not Conserved
6mer
875-894
0.001
Not Conserved
6mer
2180-2193
0.001
Not Conserved
6mer
1180-1188
0.001
1
6mer
1474-1482
0.001
1
6mer
2827-2840
0.001
Not Conserved
6mer
1218-1237
0.001
1
6mer
1365-1384
0.001
1
6mer
2319-2332
0.001
Not Conserved
6mer
1962-1978
0.001
Not Conserved
6mer
1278-1286
0.000
Not Conserved
6mer
1910-1929
0.000
Not Conserved
6mer
1572-1580
0.000
Not Conserved
6mer
1512-1531
0.000
Not Conserved
6mer
1670-1678
0.000
Not Conserved
6mer
1610-1629
0.000
Not Conserved
6mer
2372-2385
0.000
Not Conserved
6mer
2528-2547
0.000
Not Conserved
FAM225B
hsa-miR-4287
0.975

Gene Details
Chromosome: 9
Transcript: ENST00000439875
Biotype: lincRNA
Gene id: ENSG00000225684
Gene Name: FAM225B
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
202-216
0.040
1
7mer
606-617
0.006
1
7mer
6761-6773
0.006
1
7mer
6493-6513
0.005
Not Conserved
8mer
3454-3475
0.003
Not Conserved
6mer
431-443
0.003
1
6mer
6180-6201
0.001
2
6mer
5219-5239
0.001
1
6mer
6611-6620
0.001
Not Conserved
6mer
3293-3316
0.001
Not Conserved
6mer
1891-1901
0.001
Not Conserved
7mer
3653-3666
0.001
Not Conserved
XLOC_004451
hsa-miR-4287
0.975

Gene Details
Chromosome: chr5
Transcript: TCONS_00009438
Biotype: transcript isomorph
Gene id: XLOC_004451
Gene Name: XLOC_004451
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
266-279
0.065
2
6mer
637-655
0.006
2
XLOC_006242
hsa-miR-4287
0.974

Gene Details
Chromosome: chr7
Transcript: TCONS_00014209
Biotype: transcript isomorph
Gene id: XLOC_006242
Gene Name: XLOC_006242
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
31-47
0.059
2
7mer
1075-1089
0.005
1
7mer
1114-1139
0.005
1
XLOC_003798
hsa-miR-4287
0.973

Gene Details
Chromosome: chr4
Transcript: TCONS_00008352
Biotype: transcript isomorph
Gene id: XLOC_003798
Gene Name: XLOC_003798
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
341-361
0.037
2
7mer
81-101
0.018
1
6mer
387-400
0.015
2
XLOC_001198
hsa-miR-4287
0.973

Gene Details
Chromosome: chr1
Transcript: TCONS_00001814
Biotype: transcript isomorph
Gene id: XLOC_001198
Gene Name: XLOC_001198
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
451-468
0.065
3
6mer
764-783
0.005
2
RP11-44F14.2
hsa-miR-4287
0.972

Gene Details
Chromosome: 16
Transcript: ENST00000565189
Biotype: lincRNA
Gene id: ENSG00000261804
Gene Name: RP11-44F14.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
512-535
0.069
1
AC004951.6
hsa-miR-4287
0.971

Gene Details
Chromosome: 7
Transcript: ENST00000447643
Biotype: lincRNA
Gene id: ENSG00000228434
Gene Name: AC004951.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
648-662
0.039
1
7mer
1066-1085
0.029
1
MEG3
hsa-miR-4287
0.971

Gene Details
Chromosome: 14
Transcript: ENST00000455531
Biotype: lincRNA
Gene id: ENSG00000214548
Gene Name: MEG3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4532-4548
0.059
4
7mer
545-558
0.007
1
6mer
2146-2163
0.002
4
MEG3
hsa-miR-4287
0.971

Gene Details
Chromosome: 14
Transcript: ENST00000424076
Biotype: lincRNA
Gene id: ENSG00000214548
Gene Name: MEG3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2332-2348
0.064
4
8mer+wobble
455-477
0.003
3
XLOC_002251
hsa-miR-4287
0.970

Gene Details
Chromosome: chr2
Transcript: TCONS_00004369
Biotype: transcript isomorph
Gene id: XLOC_002251
Gene Name: XLOC_002251
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1323-1349
0.064
5
6mer
1078-1094
0.003
1
AP005530.2
hsa-miR-4287
0.970

Gene Details
Chromosome: 18
Transcript: ENST00000572062
Biotype: lincRNA
Gene id: ENSG00000263305
Gene Name: AP005530.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
149-167
0.068
1
RP1-90G24.8
hsa-miR-4287
0.970

Gene Details
Chromosome: 22
Transcript: ENST00000426354
Biotype: lincRNA
Gene id: ENSG00000230120
Gene Name: RP1-90G24.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
83-98
0.068
2
RP11-631M21.1
hsa-miR-4287
0.970

Gene Details
Chromosome: 10
Transcript: ENST00000566940
Biotype: lincRNA
Gene id: ENSG00000260370
Gene Name: RP11-631M21.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
147-165
0.068
1
LOC100289511
hsa-miR-4287
0.970

Gene Details
Chromosome: 14
Transcript: NR_029378.1
Biotype: antisense
Gene id: NR_029378.1 (gene)
Gene Name: LOC100289511
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1117-1129
0.051
7
7mer
1259-1284
0.012
2
6mer
197-214
0.002
2
6mer
394-410
0.002
1
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