Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
You can download the LncBase v2 Prediction Module data with a 0.6 threshold through this link

hsa-miR-4287

Loading... Please wait, this might take a few seconds...



Filters

Gene
miRNA
Score
CTD-3162L10.3
hsa-miR-4287
0.963

Gene Details
Chromosome: 19
Transcript: ENST00000587018
Biotype: antisense
Gene id: ENSG00000266973
Gene Name: CTD-3162L10.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
22-35
0.054
2
6mer
497-516
0.010
6
AC097467.2
hsa-miR-4287
0.963

Gene Details
Chromosome: 4
Transcript: ENST00000608463
Biotype: antisense
Gene id: ENSG00000250910
Gene Name: AC097467.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
490-510
0.064
4
RP11-981G7.6
hsa-miR-4287
0.963

Gene Details
Chromosome: 8
Transcript: ENST00000606115
Biotype: lincRNA
Gene id: ENSG00000272505
Gene Name: RP11-981G7.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
646-658
0.061
2
6mer
1798-1808
0.003
3
AP000770.1
hsa-miR-4287
0.962

Gene Details
Chromosome: 11
Transcript: ENST00000444123
Biotype: lincRNA
Gene id: ENSG00000237937
Gene Name: AP000770.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
466-484
0.064
2
RP11-403A3.3
hsa-miR-4287
0.962

Gene Details
Chromosome: 13
Transcript: ENST00000617298
Biotype: lincRNA
Gene id: ENSG00000275830
Gene Name: RP11-403A3.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
112-137
0.061
2
6mer
547-567
0.003
2
CTD-2144E22.8
hsa-miR-4287
0.962

Gene Details
Chromosome: 16
Transcript: ENST00000568121
Biotype: lincRNA
Gene id: ENSG00000260854
Gene Name: CTD-2144E22.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
107-119
0.064
2
XLOC_002215
hsa-miR-4287
0.961

Gene Details
Chromosome: chr2
Transcript: TCONS_00004341
Biotype: transcript isomorph
Gene id: XLOC_002215
Gene Name: XLOC_002215
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
- Brain Normal/Primary
HREpiC Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
216-235
0.044
2
7mer
113-132
0.019
1
RP11-462G12.2
hsa-miR-4287
0.961

Gene Details
Chromosome: 16
Transcript: ENST00000571302
Biotype: sense_overlapping
Gene id: ENSG00000262888
Gene Name: RP11-462G12.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
618-626
0.059
1
7mer
506-529
0.004
1
XLOC_011434
hsa-miR-4287
0.961

Gene Details
Chromosome: chr15
Transcript: TCONS_00023635
Biotype: transcript isomorph
Gene id: XLOC_011434
Gene Name: XLOC_011434
UCSC graphic: -
Expression:
  Cell Line Tissue Category
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
404-418
0.052
7
7mer
1281-1294
0.011
2
RP11-540O11.4
hsa-miR-4287
0.961

Gene Details
Chromosome: 15
Transcript: ENST00000558967
Biotype: antisense
Gene id: ENSG00000259521
Gene Name: RP11-540O11.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
225-247
0.047
6
8mer
28-42
0.016
2
RP11-138E16.1
hsa-miR-4287
0.960

Gene Details
Chromosome: 15
Transcript: ENST00000559620
Biotype: antisense
Gene id: ENSG00000259602
Gene Name: RP11-138E16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
215-236
0.059
4
6mer
558-575
0.004
2
XLOC_009887
hsa-miR-4287
0.960

Gene Details
Chromosome: chr12
Transcript: TCONS_00020568
Biotype: transcript isomorph
Gene id: XLOC_009887
Gene Name: XLOC_009887
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1246-1259
0.012
1
7mer
1186-1207
0.012
1
7mer
1222-1239
0.011
1
7mer
1206-1233
0.007
Not Conserved
7mer
1186-1199
0.007
Not Conserved
7mer
1166-1187
0.006
Not Conserved
6mer
1087-1101
0.004
1
6mer
1282-1300
0.004
1
MIR4313
hsa-miR-4287
0.959

Gene Details
Chromosome: 15
Transcript: ENST00000561777
Biotype: lincRNA
Gene id: ENSG00000261043
Gene Name: MIR4313
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2337-2358
0.038
2
7mer
2100-2115
0.009
1
7mer
455-470
0.009
1
6mer
2316-2340
0.003
1
7mer
916-933
0.002
Not Conserved
6mer
1176-1189
0.002
1
CTD-2525I3.3
hsa-miR-4287
0.958

Gene Details
Chromosome: 19
Transcript: ENST00000593857
Biotype: antisense
Gene id: ENSG00000268015
Gene Name: CTD-2525I3.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
500-520
0.055
2
7mer
145-162
0.004
1
6mer
259-274
0.003
2
LINC01013
hsa-miR-4287
0.957

Gene Details
Chromosome: 6
Transcript: ENST00000447481
Biotype: lincRNA
Gene id: ENSG00000228495
Gene Name: LINC01013
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
92-114
0.061
1
RP3-500L14.2
hsa-miR-4287
0.957

Gene Details
Chromosome: 6
Transcript: ENST00000607518
Biotype: lincRNA
Gene id: ENSG00000272209
Gene Name: RP3-500L14.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
225-243
0.061
1
LMCD1-AS1
hsa-miR-4287
0.956

Gene Details
Chromosome: 3
Transcript: ENST00000452802
Biotype: antisense
Gene id: ENSG00000227110
Gene Name: LMCD1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1235-1248
0.050
5
7mer
743-753
0.011
2
RP3-395M20.7
hsa-miR-4287
0.956

Gene Details
Chromosome: 1
Transcript: ENST00000456687
Biotype: antisense
Gene id: ENSG00000225931
Gene Name: RP3-395M20.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
162-186
0.020
1
6mer
1270-1293
0.013
2
6mer
48-62
0.013
2
6mer
68-90
0.009
2
6mer
1078-1100
0.006
1
RP11-85B7.2
hsa-miR-4287
0.956

Gene Details
Chromosome: 17
Transcript: ENST00000574307
Biotype: antisense
Gene id: ENSG00000262966
Gene Name: RP11-85B7.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5356-5374
0.015
2
8mer
142-156
0.010
1
7mer
2237-2261
0.006
2
8mer
4175-4190
0.005
2
7mer
5121-5130
0.005
2
6mer
138-156
0.004
2
7mer
4705-4720
0.003
2
7mer
4217-4229
0.002
1
6mer
284-302
0.002
2
6mer
1172-1197
0.001
3
7mer
1672-1688
0.001
1
7mer
3725-3743
0.001
1
6mer
2957-2970
0.001
1
6mer
3604-3630
0.001
1
8mer+wobble
3750-3773
0.001
2
6mer
3795-3810
0.001
2
6mer
1412-1427
0.001
2
6mer
2805-2830
0.001
2
6mer
1311-1330
0.000
1
XLOC_013779
hsa-miR-4287
0.955

Gene Details
Chromosome: chr20
Transcript: TCONS_00028429
Biotype: transcript isomorph
Gene id: XLOC_013779
Gene Name: XLOC_013779
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3062-3075
0.016
2
8mer+wobble
3167-3194
0.005
1
7mer
69-82
0.005
Not Conserved
6mer
2652-2671
0.003
2
6mer
347-365
0.003
Not Conserved
6mer
2799-2818
0.002
1
6mer
161-174
0.002
Not Conserved
6mer
807-820
0.002
Not Conserved
6mer
2454-2473
0.002
2
6mer
1230-1243
0.002
1
6mer
668-681
0.002
Not Conserved
6mer
1964-1972
0.002
2
6mer
2552-2560
0.001
1
6mer
2603-2616
0.001
1
6mer
2209-2228
0.001
2
6mer
509-517
0.001
Not Conserved
6mer
2013-2032
0.001
2
6mer
1376-1395
0.001
1
6mer
2503-2522
0.001
1
6mer
1327-1345
0.001
1
6mer
2111-2124
0.001
1
6mer
1866-1885
0.001
1
6mer
2062-2081
0.001
1
6mer
2355-2363
0.001
Not Conserved
6mer
1670-1688
0.001
Not Conserved
6mer
1474-1501
0.001
1
6mer
1523-1542
0.001
Not Conserved
6mer
1767-1775
0.001
Not Conserved
6mer
2258-2276
0.001
Not Conserved
6mer
1621-1634
0.000
Not Conserved
Funded by: