Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
You can download the LncBase v2 Prediction Module data with a 0.6 threshold through this link

hsa-miR-4287

Loading... Please wait, this might take a few seconds...



Filters

Gene
miRNA
Score
RP11-58G13.1
hsa-miR-4287
0.955

Gene Details
Chromosome: 18
Transcript: ENST00000586106
Biotype: antisense
Gene id: ENSG00000267039
Gene Name: RP11-58G13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
398-417
0.061
2
RP4-799D16.1
hsa-miR-4287
0.954

Gene Details
Chromosome: 1
Transcript: ENST00000429666
Biotype: lincRNA
Gene id: ENSG00000233755
Gene Name: RP4-799D16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
582-595
0.056
2
6mer
164-188
0.004
4
RP11-617F23.2
hsa-miR-4287
0.954

Gene Details
Chromosome: 15
Transcript: ENST00000614119
Biotype: sense_intronic
Gene id: ENSG00000273691
Gene Name: RP11-617F23.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1019-1041
0.052
3
6mer
980-989
0.008
6
XLOC_000782
hsa-miR-4287
0.954

Gene Details
Chromosome: chr1
Transcript: TCONS_00001452
Biotype: transcript isomorph
Gene id: XLOC_000782
Gene Name: XLOC_000782
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2057-2070
0.030
1
8mer+wobble
579-599
0.024
1
6mer
577-599
0.006
1
RP11-38F22.1
hsa-miR-4287
0.954

Gene Details
Chromosome: 12
Transcript: ENST00000548512
Biotype: lincRNA
Gene id: ENSG00000258220
Gene Name: RP11-38F22.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1161-1175
0.056
2
6mer
1210-1224
0.004
3
AC144450.1
hsa-miR-4287
0.954

Gene Details
Chromosome: 2
Transcript: ENST00000438247
Biotype: antisense
Gene id: ENSG00000228613
Gene Name: AC144450.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
386-404
0.049
2
6mer
125-137
0.004
1
6mer
62-71
0.004
1
6mer
462-480
0.003
2
XLOC_013670
hsa-miR-4287
0.953

Gene Details
Chromosome: chr20
Transcript: TCONS_00028327
Biotype: transcript isomorph
Gene id: XLOC_013670
Gene Name: XLOC_013670
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Lung Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
99-114
0.060
2
LINC00615
hsa-miR-4287
0.953

Gene Details
Chromosome: 12
Transcript: ENST00000546725
Biotype: lincRNA
Gene id: ENSG00000196243
Gene Name: LINC00615
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1128-1152
0.056
2
8mer+mismatch
859-876
0.004
2
DLX6-AS1
hsa-miR-4287
0.953

Gene Details
Chromosome: 7
Transcript: ENST00000430027
Biotype: antisense
Gene id: ENSG00000231764
Gene Name: DLX6-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
14551-14567
0.016
2
7mer
717-741
0.015
2
7mer
8112-8128
0.007
2
8mer
6975-6991
0.005
2
7mer
13374-13388
0.003
2
7mer
11681-11695
0.003
2
6mer
6373-6384
0.002
1
6mer
13639-13649
0.002
2
6mer
4855-4873
0.002
7
6mer
8779-8798
0.002
1
6mer
7265-7286
0.001
4
6mer
6790-6813
0.001
2
6mer
6000-6025
0.001
2
6mer
13266-13276
0.001
2
RP11-77H9.2
hsa-miR-4287
0.953

Gene Details
Chromosome: 16
Transcript: ENST00000613908
Biotype: antisense
Gene id: ENSG00000260276
Gene Name: RP11-77H9.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
411-432
0.046
1
7mer
168-190
0.014
1
AC226118.1
hsa-miR-4287
0.953

Gene Details
Chromosome: 7
Transcript: NR_033960.1
Biotype: lincRNA
Gene id: NR_033960.1 (gene)
Gene Name: AC226118.1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1911-1925
0.019
1
7mer
1894-1905
0.008
1
7mer
1834-1858
0.008
1
7mer
1871-1889
0.007
1
7mer
1851-1870
0.005
1
6mer
1845-1862
0.003
1
6mer
1883-1901
0.003
1
6mer
1863-1877
0.002
Not Conserved
6mer
1925-1936
0.002
1
6mer
1925-1940
0.002
1
6mer
942-957
0.001
2
XLOC_008769
hsa-miR-4287
0.952

Gene Details
Chromosome: chr10
Transcript: TCONS_00018467
Biotype: transcript isomorph
Gene id: XLOC_008769
Gene Name: XLOC_008769
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
76-82
0.059
4
RP11-307C19.1
hsa-miR-4287
0.952

Gene Details
Chromosome: 15
Transcript: ENST00000561283
Biotype: lincRNA
Gene id: ENSG00000259362
Gene Name: RP11-307C19.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3682-3695
0.028
8
7mer
52-68
0.017
6
8mer+wobble
2645-2668
0.005
1
6mer
3256-3280
0.003
4
7mer
2388-2401
0.003
2
6mer
3337-3348
0.003
2
6mer
2365-2383
0.001
4
RP11-696N14.1
hsa-miR-4287
0.952

Gene Details
Chromosome: 4
Transcript: ENST00000509295
Biotype: antisense
Gene id: ENSG00000246090
Gene Name: RP11-696N14.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
726-740
0.059
3
XLOC_011944
hsa-miR-4287
0.952

Gene Details
Chromosome: chr16
Transcript: TCONS_00024657
Biotype: transcript isomorph
Gene id: XLOC_011944
Gene Name: XLOC_011944
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
676-690
0.005
Not Conserved
7mer
766-778
0.004
Not Conserved
7mer
903-920
0.004
1
8mer
879-897
0.004
1
7mer
548-562
0.004
1
7mer
850-867
0.004
1
7mer
709-730
0.004
Not Conserved
7mer
745-763
0.003
Not Conserved
7mer
540-555
0.003
1
7mer
922-941
0.003
1
7mer
896-910
0.002
1
6mer
552-568
0.002
1
6mer
634-654
0.002
Not Conserved
7mer
856-874
0.002
Not Conserved
6mer
787-802
0.002
Not Conserved
6mer
967-986
0.002
1
6mer
616-633
0.002
Not Conserved
8mer+wobble
1369-1391
0.002
1
7mer
935-951
0.002
1
6mer
684-702
0.001
Not Conserved
6mer
838-857
0.001
1
6mer
942-956
0.001
1
6mer
729-748
0.001
Not Conserved
6mer
641-665
0.001
Not Conserved
6mer
931-951
0.001
1
RP11-706O15.7
hsa-miR-4287
0.952

Gene Details
Chromosome: X
Transcript: ENST00000381105
Biotype: lincRNA
Gene id: ENSG00000205662
Gene Name: RP11-706O15.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
218-236
0.029
1
7mer
1161-1187
0.016
1
8mer
269-277
0.015
1
RP11-744D14.2
hsa-miR-4287
0.951

Gene Details
Chromosome: 16
Transcript: ENST00000565257
Biotype: lincRNA
Gene id: ENSG00000260715
Gene Name: RP11-744D14.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
39-59
0.043
2
8mer
431-453
0.006
1
6mer
150-173
0.005
3
6mer
943-956
0.005
1
AC079466.1
hsa-miR-4287
0.951

Gene Details
Chromosome: 19
Transcript: ENST00000587961
Biotype: lincRNA
Gene id: ENSG00000266976
Gene Name: AC079466.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
4018-4038
0.022
1
6mer
4372-4391
0.016
2
6mer
398-421
0.011
2
6mer
1036-1061
0.007
2
6mer
2871-2888
0.005
2
RP11-561P12.5
hsa-miR-4287
0.951

Gene Details
Chromosome: 12
Transcript: ENST00000542819
Biotype: lincRNA
Gene id: ENSG00000255801
Gene Name: RP11-561P12.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
110-130
0.059
2
MIR143HG
hsa-miR-4287
0.950

Gene Details
Chromosome: 5
Transcript: ENST00000614517
Biotype: lincRNA
Gene id: ENSG00000249669
Gene Name: MIR143HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
5216-5229
0.035
2
7mer
673-695
0.010
3
7mer
1356-1376
0.007
1
6mer
94-107
0.004
4
6mer
5273-5288
0.002
1
6mer
2144-2168
0.001
2
Funded by: