Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
You can download the LncBase v2 Prediction Module data with a 0.6 threshold through this link

hsa-miR-4287

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Filters

Gene
miRNA
Score
CTC-459F4.3
hsa-miR-4287
0.949

Gene Details
Chromosome: 19
Transcript: ENST00000621046
Biotype: sense_intronic
Gene id: ENSG00000267575
Gene Name: CTC-459F4.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
215-241
0.059
1
RP1-18D14.7
hsa-miR-4287
0.949

Gene Details
Chromosome: 1
Transcript: ENST00000422216
Biotype: antisense
Gene id: ENSG00000226252
Gene Name: RP1-18D14.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3443-3465
0.031
1
8mer
774-785
0.011
2
6mer
283-303
0.003
3
7mer
283-310
0.003
Not Conserved
7mer
2685-2708
0.002
6
6mer
1645-1661
0.002
1
6mer
2685-2704
0.002
6
6mer
2965-2988
0.002
2
6mer
310-323
0.002
3
7mer
1665-1678
0.002
1
LINC01234
hsa-miR-4287
0.949

Gene Details
Chromosome: 12
Transcript: ENST00000547963
Biotype: lincRNA
Gene id: ENSG00000249550
Gene Name: LINC01234
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1965-1984
0.017
2
7mer
1942-1955
0.016
2
7mer
1916-1935
0.011
1
8mer
1186-1199
0.007
2
6mer
1977-2001
0.004
2
6mer
1370-1380
0.003
1
6mer
1041-1066
0.001
1
XLOC_009322
hsa-miR-4287
0.947

Gene Details
Chromosome: chr11
Transcript: TCONS_00019527
Biotype: transcript isomorph
Gene id: XLOC_009322
Gene Name: XLOC_009322
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
457-478
0.043
3
7mer
879-892
0.011
1
6mer
37-60
0.004
4
AC090627.1
hsa-miR-4287
0.946

Gene Details
Chromosome: 17
Transcript: ENST00000581362
Biotype: antisense
Gene id: ENSG00000235300
Gene Name: AC090627.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
12-29
0.058
7
ADPGK-AS1
hsa-miR-4287
0.946

Gene Details
Chromosome: 15
Transcript: ENST00000563592
Biotype: antisense
Gene id: ENSG00000260898
Gene Name: ADPGK-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2675-2686
0.046
1
7mer
2128-2141
0.008
4
7mer
2403-2422
0.004
Not Conserved
XLOC_008642
hsa-miR-4287
0.946

Gene Details
Chromosome: chr10
Transcript: TCONS_00017881
Biotype: transcript isomorph
Gene id: XLOC_008642
Gene Name: XLOC_008642
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
- Kidney Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
203-217
0.038
3
8mer
794-811
0.012
1
7mer
794-817
0.007
1
RP3-399L15.3
hsa-miR-4287
0.945

Gene Details
Chromosome: 6
Transcript: ENST00000421891
Biotype: antisense
Gene id: ENSG00000228624
Gene Name: RP3-399L15.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
737-759
0.051
8
6mer
659-665
0.007
6
XLOC_000916
hsa-miR-4287
0.945

Gene Details
Chromosome: chr1
Transcript: TCONS_00001583
Biotype: transcript isomorph
Gene id: XLOC_000916
Gene Name: XLOC_000916
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
259-277
0.053
3
6mer
50-56
0.005
1
RP5-1007G16.1
hsa-miR-4287
0.945

Gene Details
Chromosome: 1
Transcript: NR_038372.1
Biotype: antisense
Gene id: NR_038372.1 (gene)
Gene Name: RP5-1007G16.1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
190-208
0.036
2
7mer
437-452
0.015
4
6mer
63-78
0.003
1
6mer
449-469
0.002
2
CSMD2-AS1
hsa-miR-4287
0.944

Gene Details
Chromosome: 1
Transcript: ENST00000425631
Biotype: antisense
Gene id: ENSG00000231163
Gene Name: CSMD2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
193-211
0.036
2
7mer
440-455
0.015
4
6mer
66-81
0.003
1
6mer
452-472
0.002
2
ERVK3-1
hsa-miR-4287
0.943

Gene Details
Chromosome: 19
Transcript: ENST00000590505
Biotype: retained_intron
Gene id: ENSG00000142396
Gene Name: ERVK3-1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2885-2906
0.040
1
8mer
1783-1797
0.007
1
7mer
1673-1693
0.006
1
6mer
846-862
0.003
1
7mer
1502-1528
0.002
Not Conserved
DGCR9
hsa-miR-4287
0.943

Gene Details
Chromosome: 22
Transcript: ENST00000609630
Biotype: lincRNA
Gene id: ENSG00000273032
Gene Name: DGCR9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1304-1318
0.014
1
8mer
814-841
0.012
1
7mer
420-439
0.010
1
7mer
1707-1733
0.007
1
6mer
2207-2223
0.007
1
8mer+wobble
1928-1944
0.007
1
RP11-100N20.1
hsa-miR-4287
0.943

Gene Details
Chromosome: 4
Transcript: ENST00000505175
Biotype: antisense
Gene id: ENSG00000251059
Gene Name: RP11-100N20.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
168-187
0.037
2
7mer
156-171
0.020
2
CTD-3239E11.2
hsa-miR-4287
0.943

Gene Details
Chromosome: 8
Transcript: ENST00000521203
Biotype: antisense
Gene id: ENSG00000253197
Gene Name: CTD-3239E11.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
27-42
0.057
5
XLOC_012312
hsa-miR-4287
0.943

Gene Details
Chromosome: chr17
Transcript: TCONS_00025497
Biotype: transcript isomorph
Gene id: XLOC_012312
Gene Name: XLOC_012312
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Heart Normal/Primary
- Testes Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
555-565
0.056
2
XLOC_013611
hsa-miR-4287
0.942

Gene Details
Chromosome: chr20
Transcript: TCONS_00027982
Biotype: transcript isomorph
Gene id: XLOC_013611
Gene Name: XLOC_013611
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
66-80
0.010
1
8mer
124-144
0.009
1
8mer
188-208
0.008
1
8mer
92-112
0.008
1
8mer
156-176
0.008
1
6mer
1943-1950
0.005
3
6mer
1703-1725
0.003
2
6mer
1797-1809
0.002
3
6mer
1241-1261
0.002
3
6mer
1203-1214
0.001
1
RP11-298C2.1
hsa-miR-4287
0.942

Gene Details
Chromosome: 3
Transcript: ENST00000620572
Biotype: sense_intronic
Gene id: ENSG00000277539
Gene Name: RP11-298C2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
102-129
0.056
2
RP11-1L9.1
hsa-miR-4287
0.941

Gene Details
Chromosome: X
Transcript: ENST00000420403
Biotype: lincRNA
Gene id: ENSG00000226434
Gene Name: RP11-1L9.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
54-80
0.056
Not Conserved
CTC-436K13.3
hsa-miR-4287
0.941

Gene Details
Chromosome: 5
Transcript: ENST00000518103
Biotype: lincRNA
Gene id: ENSG00000253424
Gene Name: CTC-436K13.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4287
Sequence: ucucccuugagggcacuuu
MirBase ID: MIMAT0016917
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
15-32
0.056
1
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