Please cite:
Dimitra Karagkouni, Maria D. Paraskevopoulou, Serafeim Chatzopoulos, Ioannis S. Vlachos, Spyros Tastsoglou, Ilias Kanellos, Dimitris Papadimitriou, Ioannis Kavakiotis, Sofia Maniou, Giorgos Skoufos, Thanasis Vergoulis, Theodore Dalamagas, Artemis G. Hatzigeorgiou; DIANA-TarBase v8: a decade-long collection of experimentally supported miRNA–gene interactions, Nucleic Acids Research, gkx1141, https://doi.org/10.1093/nar/gkx1141
Bulk download:
We have updated the bulk download module, which simplifies the download process! Please find the new online form by following this link

hsa-miR-125b-5p


Loading... Please wait, this might take a few seconds...



Filters
Clear all
Interactions: 1138, Experiments: (low: , high: , unknown: ) Cell lines: , Tissues: , Publications:
Gene name miRNA name Experiments
throughput
Publications Cell lines Tissues Pred. Score
FGFR2 hsa-miR-125b-5p low: 10 high: 0 1 1 1 -
Low-throughput experiments (9 positive, 1 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Ning Xu et al. 2011 RP Skin Neonatal Epidermal Keratinocytes Primary Keratinocytes N/A
Location Method Result Regulation Validation Type Source
chr10:121479793-121479834 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
chr10:121479265-121479306 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
chr10:121478646-121478678 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
chr10:121478625-121478647 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
Ning Xu et al. 2011 WB qP Skin Neonatal Epidermal Keratinocytes N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Western Blot POSITIVE INDIRECT TarBase 7.0
UNKNOWN qPCR NEGATIVE INDIRECT TarBase 7.0
Ning Xu et al. 2011 RP Skin Neonatal Epidermal Keratinocytes HELA N/A
Location Method Result Regulation Validation Type Source
chr10:121479793-121479834 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
chr10:121479265-121479306 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
chr10:121478646-121478678 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
chr10:121478625-121478647 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
EPO hsa-miR-125b-5p low: 8 high: 0 2 2 2 -
Low-throughput experiments (8 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Jan-Henning Klusmann et al. 2010 O N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Other POSITIVE INDIRECT TarBase 6.0
Ferracin Manuela et al. 2013 qP Mammary Gland Breast Cancer Cell Lines N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN qPCR POSITIVE INDIRECT TarBase 7.0
Ferracin Manuela et al. 2013 RP Mammary Gland Breast Cancer Cell Lines MCF7 N/A
Location Method Result Regulation Validation Type Source
chr7:100159031-100159059 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
chr7:100158924-100158952 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
chr7:100158819-100158847 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
Ferracin Manuela et al. 2013 RP Mammary Gland Breast Cancer Cell Lines HEK293 N/A
Location Method Result Regulation Validation Type Source
chr7:100159031-100159059 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
chr7:100158924-100158952 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
chr7:100158819-100158847 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
ARID3B hsa-miR-125b-5p low: 4 high: 0 1 2 1 0.999
Low-throughput experiments (4 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Shiva Akhavantabasi et al. 2012 WB Mammary Gland MCF7 N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Western Blot POSITIVE INDIRECT TarBase 7.0
Shiva Akhavantabasi et al. 2012 RP Mammary Gland N/A MCF7 N/A
Location Method Result Regulation Validation Type Source
chr15:74596805-74597898 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
chr15:74597551-74597898 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
Shiva Akhavantabasi et al. 2012 RP Mammary Gland MCF7 MCF7 N/A
Location Method Result Regulation Validation Type Source
chr15:74595897-74596374 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
MEGF9 hsa-miR-125b-5p low: 3 high: 2 2 2 1 0.917
Low-throughput experiments (1 positive, 2 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Feliciano A. et al. 2013 RP RP Mammary Gland Breast Cancer Cell Lines HEK293T N/A
Location Method Result Regulation Validation Type Source
chr9:120603432-120603498 Luciferase Reporter Assay NEGATIVE DIRECT TarBase 8.0
chr9:120604495-120604568 Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
chr9:120604728-120604812 Luciferase Reporter Assay NEGATIVE DIRECT TarBase 8.0
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Pillai MM et al. 2014 IP Mammary Gland BT474 N/A N/A
Location Method Result Regulation Validation Type Source
chr9:120604529-120604555 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr9:120603462-120603480 HITS-CLIP POSITIVE DIRECT TarBase 7.0
EPOR hsa-miR-125b-5p low: 3 high: 0 1 1 1 -
Low-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Ferracin Manuela et al. 2013 qP Mammary Gland Breast Cancer Cell Lines N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN qPCR POSITIVE INDIRECT TarBase 7.0
Ferracin Manuela et al. 2013 RP Mammary Gland Breast Cancer Cell Lines MCF7 N/A
Location Method Result Regulation Validation Type Source
chr19:11349583-11349611 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
Ferracin Manuela et al. 2013 RP Mammary Gland Breast Cancer Cell Lines HEK293 N/A
Location Method Result Regulation Validation Type Source
chr19:11349583-11349611 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
RPS6KA1 hsa-miR-125b-5p low: 2 high: 0 1 1 1 -
Low-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
E L McKinsey et al. 2011 WB Muscle A673 N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Western Blot POSITIVE INDIRECT TarBase 7.0
E L McKinsey et al. 2011 RP Muscle A673 A673 N/A
Location Method Result Regulation Validation Type Source
chr1:26574968-26574985 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
ADAMTS4 hsa-miR-125b-5p low: 2 high: 0 1 1 1 0.531
Low-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Matsukawa T et al. 2013 WB Cartilage HCOA N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Western Blot POSITIVE INDIRECT TarBase 7.0
Matsukawa T et al. 2013 RP Cartilage HCOA HCOA N/A
Location Method Result Regulation Validation Type Source
chr1:161190563-161190585 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
MUC1 hsa-miR-125b-5p low: 2 high: 0 1 1 2 -
Low-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Rajabi H et al. 2010 WB N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Western Blot POSITIVE INDIRECT TarBase 6.0
Rajabi H et al. 2010 RP Breast Cancerous Tissues N/A N/A N/A
Location Method Result Regulation Validation Type Source
chr1:155186068-155186089 Luciferase Reporter Assay POSITIVE DIRECT TarBase 6.0
ERBB3 hsa-miR-125b-5p low: 2 high: 0 1 2 1 -
Low-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Jun He et al. 2012 RP Ovary OVCAR3 OVCAR3 N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
Jun He et al. 2012 RP Ovary A2780 A2780 N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
EDN1 hsa-miR-125b-5p low: 2 high: 0 1 1 1 -
Low-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Tsai KW. et al. 2015 RP Stomach AGS AGS N/A
Location Method Result Regulation Validation Type Source
chr6:12296092-12297166 Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
Tsai KW. et al. 2015 RP Stomach AGS HEK293T N/A
Location Method Result Regulation Validation Type Source
chr6:12296092-12297166 Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
IVL hsa-miR-125b-5p low: 2 high: 0 1 1 1 -
Low-throughput experiments (0 positive, 2 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Ning Xu et al. 2011 WB qP Skin Neonatal Epidermal Keratinocytes N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Western Blot NEGATIVE INDIRECT TarBase 7.0
UNKNOWN qPCR NEGATIVE INDIRECT TarBase 7.0
CSNK2A1 hsa-miR-125b-5p low: 2 high: 0 1 1 1 -
Low-throughput experiments (1 positive, 1 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Feliciano A. et al. 2013 RP RP Mammary Gland Breast Cancer Cell Lines HEK293T N/A
Location Method Result Regulation Validation Type Source
chr20:483490-483548 Luciferase Reporter Assay NEGATIVE DIRECT TarBase 8.0
chr20:483724-483795 Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
TP53INP1 hsa-miR-125b-5p low: 1 high: 4 5 5 5 -
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Le Minh T. N. et al. 2011 RP Kidney HEK293T HEK293T N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
High-throughput experiments (4 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Skalsky Rebecca L. et al. 2012 IP N/A EF3DAGO2 N/A N/A
Location Method Result Regulation Validation Type Source
chr8:94930080-94930104 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Pillai MM et al. 2014 IP Mammary Gland BT474 N/A N/A
Location Method Result Regulation Validation Type Source
chr8:94930080-94930104 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Haecker Irina et al. 2012 IP Bone Marrow BCBL1 N/A N/A
Location Method Result Regulation Validation Type Source
chr8:94930080-94930104 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Eva Gottwein et al. 2011 IP Pleura BC1 N/A N/A
Location Method Result Regulation Validation Type Source
chr8:94930080-94930104 PAR-CLIP POSITIVE DIRECT TarBase 7.0
BBC3 hsa-miR-125b-5p low: 1 high: 2 3 3 3 0.629
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Le Minh T. N. et al. 2011 RP Kidney HEK293T HEK293T N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Whisnant Adam W et al. 2013 IP Cervix TZMBL N/A shRNAs against HIV-1
Location Method Result Regulation Validation Type Source
chr19:47221484-47221503 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Pillai MM et al. 2014 IP Mammary Gland BT474 N/A N/A
Location Method Result Regulation Validation Type Source
chr19:47221484-47221503 HITS-CLIP POSITIVE DIRECT TarBase 7.0
PPP2CA hsa-miR-125b-5p low: 1 high: 1 2 2 1 0.828
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Le Minh T. N. et al. 2011 RP Kidney HEK293T HEK293T N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Kishore S et al. 2011 IP Kidney HEK293 N/A mild MNase digestion
Location Method Result Regulation Validation Type Source
chr5:134197290-134197299 PAR-CLIP POSITIVE DIRECT TarBase 7.0
IKZF4 hsa-miR-125b-5p low: 1 high: 1 2 2 2 0.864
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Esmerina Tili et al. 2012 RP Bone Marrow CLL Cell Lines MEG01 N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Kameswaran V et al. 2014 IP Pancreas BETA Cells N/A N/A
Location Method Result Regulation Validation Type Source
chr12:56035844-56035865 HITS-CLIP POSITIVE DIRECT TarBase 7.0
IKZF3 hsa-miR-125b-5p low: 1 high: 1 2 2 2 -
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Esmerina Tili et al. 2012 RP Bone Marrow CLL Cell Lines MEG01 N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Pillai MM et al. 2014 IP Mammary Gland BT474 N/A N/A
Location Method Result Regulation Validation Type Source
chr17:39765773-39765799 HITS-CLIP POSITIVE DIRECT TarBase 7.0
SMO hsa-miR-125b-5p low: 1 high: 0 1 1 1 -
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Elisab et al. 2008 RP Nervous DAOY DAOY N/A
Location Method Result Regulation Validation Type Source
chr7:129212658-129212680 Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
PCTP hsa-miR-125b-5p low: 1 high: 0 1 1 1 -
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Esmerina Tili et al. 2012 RP Bone Marrow CLL Cell Lines HEK293 N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
CCNJ hsa-miR-125b-5p low: 1 high: 0 1 1 1 -
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Feliciano A. et al. 2013 RP Mammary Gland Breast Cancer Cell Lines HEK293T N/A
Location Method Result Regulation Validation Type Source
chr10:96058905-96058983 Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0