Please cite:
Dimitra Karagkouni, Maria D. Paraskevopoulou, Serafeim Chatzopoulos, Ioannis S. Vlachos, Spyros Tastsoglou, Ilias Kanellos, Dimitris Papadimitriou, Ioannis Kavakiotis, Sofia Maniou, Giorgos Skoufos, Thanasis Vergoulis, Theodore Dalamagas, Artemis G. Hatzigeorgiou; DIANA-TarBase v8: a decade-long collection of experimentally supported miRNA–gene interactions, Nucleic Acids Research, gkx1141, https://doi.org/10.1093/nar/gkx1141
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hsa-miR-129-2-3p


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Interactions: 4600, Experiments: (low: , high: , unknown: ) Cell lines: , Tissues: , Publications:
Gene name miRNA name Experiments
throughput
Publications Cell lines Tissues Pred. Score
SOX4 hsa-miR-129-2-3p low: 4 high: 6 4 5 4 -
Low-throughput experiments (4 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Yi-Wen Huang et al. 2009 WB RP Uterus/Endometrium ISHIKAWA N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Western Blot POSITIVE INDIRECT TarBase 7.0
chr6:21595960-21598619 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
Yi-Wen Huang et al. 2009 WB RP Uterus/Endometrium ECC1 N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Western Blot POSITIVE INDIRECT TarBase 7.0
chr6:21595960-21598619 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
High-throughput experiments (6 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Jingli Cao et al. 2012 MA Eye HTERT_RPE1 N/A 72hrs post-transfection, Overexpression
Location Method Result Regulation Validation Type Source
UNKNOWN Microarrays POSITIVE INDIRECT TarBase 8.0
Yi-Wen Huang et al. 2009 MA Uterus/Endometrium ISHIKAWA N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Microarrays POSITIVE INDIRECT TarBase 7.0
Yi-Wen Huang et al. 2009 MA Uterus/Endometrium ECC1 N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Microarrays POSITIVE INDIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr6:21597583-21597590 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr6:21597583-21597590 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Kameswaran V et al. 2014 IP Pancreas BETA Cells N/A N/A
Location Method Result Regulation Validation Type Source
chr6:21597583-21597590 HITS-CLIP POSITIVE DIRECT TarBase 7.0
UBE2F hsa-miR-129-2-3p low: 2 high: 0 1 2 1 -
Low-throughput experiments (0 positive, 2 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Yi-Wen Huang et al. 2009 RP Uterus/Endometrium ISHIKAWA N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Luciferase Reporter Assay NEGATIVE DIRECT TarBase 7.0
Yi-Wen Huang et al. 2009 RP Uterus/Endometrium ECC1 N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Luciferase Reporter Assay NEGATIVE DIRECT TarBase 7.0
MAP3K7 hsa-miR-129-2-3p low: 1 high: 0 1 1 1 0.526
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Jie Ding et al. 2013 RP Liver HCC Cell Lines HEK293T N/A
Location Method Result Regulation Validation Type Source
chr6:90515663-90516483 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
RQCD1 hsa-miR-129-2-3p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr2:218595831-218595859 Chimeric fragments POSITIVE DIRECT TarBase 8.0
BTG2 hsa-miR-129-2-3p low: 0 high: 4 2 2 2 -
High-throughput experiments (4 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Skalsky Rebecca L. et al. 2012 IP N/A LCLBACD3 N/A N/A
Location Method Result Regulation Validation Type Source
chr1:203308552-203308574 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr1:203308552-203308574 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr1:203308552-203308574 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr1:203307141-203307148 HITS-CLIP POSITIVE DIRECT TarBase 7.0
ANKRD52 hsa-miR-129-2-3p low: 0 high: 4 4 4 4 0.765
High-throughput experiments (4 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Jingli Cao et al. 2012 MA Eye HTERT_RPE1 N/A 72hrs post-transfection, Overexpression
Location Method Result Regulation Validation Type Source
UNKNOWN Microarrays POSITIVE INDIRECT TarBase 8.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr12:56242454-56242475 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Kameswaran V et al. 2014 IP Pancreas BETA Cells N/A N/A
Location Method Result Regulation Validation Type Source
chr12:56241087-56241108 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Balakrishnan I et al. 2014 IP Bone Marrow HS5 N/A N/A
Location Method Result Regulation Validation Type Source
chr12:56241087-56241108 HITS-CLIP POSITIVE DIRECT TarBase 7.0
NACC2 hsa-miR-129-2-3p low: 0 high: 4 2 2 2 -
High-throughput experiments (4 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Jingli Cao et al. 2012 MA Eye HTERT_RPE1 N/A 72hrs post-transfection, Overexpression
Location Method Result Regulation Validation Type Source
UNKNOWN Microarrays POSITIVE INDIRECT TarBase 8.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chr9:136011288-136011312 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr9:136009111-136009137 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr9:136009111-136009137 HITS-CLIP POSITIVE DIRECT TarBase 7.0
NPTN hsa-miR-129-2-3p low: 0 high: 4 4 4 4 0.872
High-throughput experiments (4 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Jingli Cao et al. 2012 MA Eye HTERT_RPE1 N/A 72hrs post-transfection, Overexpression
Location Method Result Regulation Validation Type Source
UNKNOWN Microarrays POSITIVE INDIRECT TarBase 8.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr15:73560847-73560868 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Kameswaran V et al. 2014 IP Pancreas BETA Cells N/A N/A
Location Method Result Regulation Validation Type Source
chr15:73560460-73560469 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Balakrishnan I et al. 2014 IP Bone Marrow HS5 N/A N/A
Location Method Result Regulation Validation Type Source
chr15:73560460-73560469 HITS-CLIP POSITIVE DIRECT TarBase 7.0
RPLP1 hsa-miR-129-2-3p low: 0 high: 3 2 2 2 -
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr15:69455472-69455491 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr15:69455472-69455491 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Balakrishnan I et al. 2014 IP Bone Marrow HS27A N/A N/A
Location Method Result Regulation Validation Type Source
chr15:69455472-69455491 HITS-CLIP POSITIVE DIRECT TarBase 7.0
TXNL4A hsa-miR-129-2-3p low: 0 high: 3 1 1 1 0.492
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chr18:79973584-79973611 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr18:79973584-79973611 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr18:79973584-79973611 HITS-CLIP POSITIVE DIRECT TarBase 7.0
HSP90B1 hsa-miR-129-2-3p low: 0 high: 3 2 3 2 -
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chr12:103943109-103943116 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Balakrishnan I et al. 2014 IP Bone Marrow HS5 N/A N/A
Location Method Result Regulation Validation Type Source
chr12:103943109-103943116 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Balakrishnan I et al. 2014 IP Bone Marrow HS27A N/A N/A
Location Method Result Regulation Validation Type Source
chr12:103943109-103943116 HITS-CLIP POSITIVE DIRECT TarBase 7.0
CBX6 hsa-miR-129-2-3p low: 0 high: 3 2 2 2 0.622
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr22:38864462-38864484 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr22:38864462-38864484 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Balakrishnan I et al. 2014 IP Bone Marrow HS5 N/A N/A
Location Method Result Regulation Validation Type Source
chr22:38864462-38864484 HITS-CLIP POSITIVE DIRECT TarBase 7.0
SRSF7 hsa-miR-129-2-3p low: 0 high: 3 1 1 1 -
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr2:38750132-38750160 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr2:38745078-38745098 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr2:38745078-38745098 HITS-CLIP POSITIVE DIRECT TarBase 7.0
DUSP1 hsa-miR-129-2-3p low: 0 high: 3 1 1 1 -
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chr5:172768667-172768689 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr5:172768667-172768689 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr5:172768667-172768689 HITS-CLIP POSITIVE DIRECT TarBase 7.0
GIGYF1 hsa-miR-129-2-3p low: 0 high: 3 2 2 2 -
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr7:100685997-100686018 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr7:100685997-100686018 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Kameswaran V et al. 2014 IP Pancreas BETA Cells N/A N/A
Location Method Result Regulation Validation Type Source
chr7:100685997-100686018 HITS-CLIP POSITIVE DIRECT TarBase 7.0
PPP1R10 hsa-miR-129-2-3p low: 0 high: 3 1 1 1 -
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr6:30601047-30601054 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr6:30601047-30601054 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chr6:30601047-30601054 HITS-CLIP POSITIVE DIRECT TarBase 7.0
CSNK1E hsa-miR-129-2-3p low: 0 high: 3 2 2 2 -
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr22:38291448-38291470 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr22:38290992-38291011 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Balakrishnan I et al. 2014 IP Bone Marrow HS5 N/A N/A
Location Method Result Regulation Validation Type Source
chr22:38291448-38291470 HITS-CLIP POSITIVE DIRECT TarBase 7.0
EIF4EBP2 hsa-miR-129-2-3p low: 0 high: 3 3 3 3 0.563
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Jingli Cao et al. 2012 MA Eye HTERT_RPE1 N/A 72hrs post-transfection, Overexpression
Location Method Result Regulation Validation Type Source
UNKNOWN Microarrays POSITIVE INDIRECT TarBase 8.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr10:70427044-70427063 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Kameswaran V et al. 2014 IP Pancreas BETA Cells N/A N/A
Location Method Result Regulation Validation Type Source
chr10:70426961-70426981 HITS-CLIP POSITIVE DIRECT TarBase 7.0
CSPG4 hsa-miR-129-2-3p low: 0 high: 3 2 3 2 0.461
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Jingli Cao et al. 2012 MA Eye HTERT_RPE1 N/A 72hrs post-transfection, Overexpression
Location Method Result Regulation Validation Type Source
UNKNOWN Microarrays POSITIVE INDIRECT TarBase 8.0
Balakrishnan I et al. 2014 IP Bone Marrow HS5 N/A N/A
Location Method Result Regulation Validation Type Source
chr15:75674787-75674805 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Balakrishnan I et al. 2014 IP Bone Marrow HS27A N/A N/A
Location Method Result Regulation Validation Type Source
chr15:75674787-75674805 HITS-CLIP POSITIVE DIRECT TarBase 7.0
BRI3BP hsa-miR-129-2-3p low: 0 high: 3 2 2 2 0.502
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Jingli Cao et al. 2012 MA Eye HTERT_RPE1 N/A 72hrs post-transfection, Overexpression
Location Method Result Regulation Validation Type Source
UNKNOWN Microarrays POSITIVE INDIRECT TarBase 8.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr12:125029948-125029969 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chr12:125025087-125025108 HITS-CLIP POSITIVE DIRECT TarBase 7.0