Please cite:
Dimitra Karagkouni, Maria D. Paraskevopoulou, Serafeim Chatzopoulos, Ioannis S. Vlachos, Spyros Tastsoglou, Ilias Kanellos, Dimitris Papadimitriou, Ioannis Kavakiotis, Sofia Maniou, Giorgos Skoufos, Thanasis Vergoulis, Theodore Dalamagas, Artemis G. Hatzigeorgiou; DIANA-TarBase v8: a decade-long collection of experimentally supported miRNA–gene interactions, Nucleic Acids Research, gkx1141, https://doi.org/10.1093/nar/gkx1141
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hsa-miR-1343-3p


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Interactions: 2937, Experiments: (low: , high: , unknown: ) Cell lines: , Tissues: , Publications:
Gene name miRNA name Experiments
throughput
Publications Cell lines Tissues Pred. Score
ZNF469 hsa-miR-1343-3p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Moore M et al. 2015 IP Liver HUH7.5 N/A N/A
Location Method Result Regulation Validation Type Source
chr16:88433709-88433784 CLEAR-CLIP POSITIVE DIRECT TarBase 8.0
BTG2 hsa-miR-1343-3p low: 0 high: 9 1 1 1 0.705
High-throughput experiments (9 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr1:203308511-203308524 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr1:203308511-203308524 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr1:203308511-203308524 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:emetine
Location Method Result Regulation Validation Type Source
chr1:203308511-203308524 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr1:203308511-203308524 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr1:203308511-203308524 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr1:203308511-203308524 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr1:203308068-203308093 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr1:203307741-203307768 HITS-CLIP POSITIVE DIRECT TarBase 7.0
CBX6 hsa-miR-1343-3p low: 0 high: 8 2 3 3 0.704
High-throughput experiments (7 positive, 1 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Stolzenburg LR et al. 2016 RS Lung A549 N/A 48hrs post-transfection, Overexpression
Location Method Result Regulation Validation Type Source
UNKNOWN RNA-Seq NEGATIVE INDIRECT TarBase 8.0
Stolzenburg LR et al. 2016 RS Bronchus 16HBE14O N/A 48hrs post-transfection, Overexpression
Location Method Result Regulation Validation Type Source
UNKNOWN RNA-Seq POSITIVE INDIRECT TarBase 8.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr22:38864409-38864416 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr22:38864409-38864416 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr22:38864588-38864615 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr22:38864588-38864615 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr22:38864409-38864416 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr22:38862765-38862786 HITS-CLIP POSITIVE DIRECT TarBase 7.0
EIF4A1 hsa-miR-1343-3p low: 0 high: 6 1 1 1 -
High-throughput experiments (6 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:emetine
Location Method Result Regulation Validation Type Source
chr17:7573399-7573421 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr17:7573420-7573443 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr17:7573399-7573421 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr17:7573420-7573443 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr17:7573399-7573421 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr17:7573374-7573401 HITS-CLIP POSITIVE DIRECT TarBase 7.0
NPDC1 hsa-miR-1343-3p low: 0 high: 5 1 1 1 0.484
High-throughput experiments (5 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chr9:137043369-137043396 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:emetine
Location Method Result Regulation Validation Type Source
chr9:137042942-137042966 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr9:137043871-137043891 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr9:137043369-137043396 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr9:137042942-137042966 HITS-CLIP POSITIVE DIRECT TarBase 7.0
NUFIP2 hsa-miR-1343-3p low: 0 high: 5 1 1 1 0.636
High-throughput experiments (5 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr17:29263935-29263959 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr17:29263935-29263959 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr17:29263935-29263959 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr17:29263935-29263959 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr17:29263935-29263959 HITS-CLIP POSITIVE DIRECT TarBase 7.0
MXRA5 hsa-miR-1343-3p low: 0 high: 4 1 1 1 -
High-throughput experiments (4 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chrX:3317977-3317997 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chrX:3317977-3317997 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chrX:3317977-3317997 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:emetine
Location Method Result Regulation Validation Type Source
chrX:3317977-3317997 HITS-CLIP POSITIVE DIRECT TarBase 7.0
EMC10 hsa-miR-1343-3p low: 0 high: 4 1 1 1 -
High-throughput experiments (4 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:emetine
Location Method Result Regulation Validation Type Source
chr19:50487981-50488005 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr19:50487753-50487781 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr19:50485776-50485801 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr19:50480929-50480953 HITS-CLIP POSITIVE DIRECT TarBase 7.0
C6orf120 hsa-miR-1343-3p low: 0 high: 4 2 2 2 0.546
High-throughput experiments (3 positive, 1 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Stolzenburg LR et al. 2016 RS Lung A549 N/A 48hrs post-transfection, Overexpression
Location Method Result Regulation Validation Type Source
UNKNOWN RNA-Seq NEGATIVE INDIRECT TarBase 8.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr6:169704587-169704599 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr6:169704587-169704599 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr6:169702641-169702664 HITS-CLIP POSITIVE DIRECT TarBase 7.0
BTG3 hsa-miR-1343-3p low: 0 high: 3 1 1 1 -
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr21:17594270-17594289 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr21:17594270-17594289 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr21:17594270-17594289 HITS-CLIP POSITIVE DIRECT TarBase 7.0
LONRF2 hsa-miR-1343-3p low: 0 high: 3 1 1 1 0.717
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr2:100279121-100279145 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:emetine
Location Method Result Regulation Validation Type Source
chr2:100277338-100277363 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chr2:100275450-100275458 HITS-CLIP POSITIVE DIRECT TarBase 7.0
CREBL2 hsa-miR-1343-3p low: 0 high: 3 1 1 1 0.631
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chr12:12642860-12642882 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr12:12642244-12642272 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr12:12642244-12642272 HITS-CLIP POSITIVE DIRECT TarBase 7.0
C9orf142 hsa-miR-1343-3p low: 0 high: 3 1 1 1 -
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr9:136993617-136993636 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr9:136993617-136993636 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr9:136993594-136993622 HITS-CLIP POSITIVE DIRECT TarBase 7.0
RPS14 hsa-miR-1343-3p low: 0 high: 3 1 1 1 -
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr5:150446874-150446890 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr5:150446874-150446890 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr5:150446874-150446890 HITS-CLIP POSITIVE DIRECT TarBase 7.0
NSMF hsa-miR-1343-3p low: 0 high: 3 1 1 1 -
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr9:137452585-137452608 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr9:137454442-137454460 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr9:137452585-137452608 HITS-CLIP POSITIVE DIRECT TarBase 7.0
JMJD4 hsa-miR-1343-3p low: 0 high: 3 1 1 1 -
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr1:227733026-227733047 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr1:227732105-227732132 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr1:227732087-227732112 HITS-CLIP POSITIVE DIRECT TarBase 7.0
ZBTB47 hsa-miR-1343-3p low: 0 high: 3 1 1 1 -
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr3:42665341-42665367 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr3:42665341-42665367 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr3:42659559-42659583 HITS-CLIP POSITIVE DIRECT TarBase 7.0
CTSA hsa-miR-1343-3p low: 0 high: 4 2 3 3 0.550
High-throughput experiments (3 positive, 1 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Stolzenburg LR et al. 2016 RS Lung A549 N/A 48hrs post-transfection, Overexpression
Location Method Result Regulation Validation Type Source
UNKNOWN RNA-Seq NEGATIVE INDIRECT TarBase 8.0
Stolzenburg LR et al. 2016 RS Bronchus 16HBE14O N/A 48hrs post-transfection, Overexpression
Location Method Result Regulation Validation Type Source
UNKNOWN RNA-Seq POSITIVE INDIRECT TarBase 8.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chr20:45898701-45898728 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr20:45898701-45898728 HITS-CLIP POSITIVE DIRECT TarBase 7.0
CBX5 hsa-miR-1343-3p low: 0 high: 3 2 2 2 0.995
High-throughput experiments (2 positive, 1 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Stolzenburg LR et al. 2016 RS Lung A549 N/A 48hrs post-transfection, Overexpression
Location Method Result Regulation Validation Type Source
UNKNOWN RNA-Seq NEGATIVE INDIRECT TarBase 8.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chr12:54241078-54241087 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr12:54231947-54231955 HITS-CLIP POSITIVE DIRECT TarBase 7.0
IREB2 hsa-miR-1343-3p low: 0 high: 3 2 2 2 0.855
High-throughput experiments (2 positive, 1 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Stolzenburg LR et al. 2016 RS Lung A549 N/A 48hrs post-transfection, Overexpression
Location Method Result Regulation Validation Type Source
UNKNOWN RNA-Seq NEGATIVE INDIRECT TarBase 8.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr15:78498186-78498208 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr15:78498186-78498208 HITS-CLIP POSITIVE DIRECT TarBase 7.0