Please cite:
Dimitra Karagkouni, Maria D. Paraskevopoulou, Serafeim Chatzopoulos, Ioannis S. Vlachos, Spyros Tastsoglou, Ilias Kanellos, Dimitris Papadimitriou, Ioannis Kavakiotis, Sofia Maniou, Giorgos Skoufos, Thanasis Vergoulis, Theodore Dalamagas, Artemis G. Hatzigeorgiou; DIANA-TarBase v8: a decade-long collection of experimentally supported miRNA–gene interactions, Nucleic Acids Research, gkx1141, https://doi.org/10.1093/nar/gkx1141
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hsa-miR-135b-5p


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Interactions: 315, Experiments: (low: , high: , unknown: ) Cell lines: , Tissues: , Publications:
Gene name miRNA name Experiments
throughput
Publications Cell lines Tissues Pred. Score
MYC hsa-miR-135b-5p low: 3 high: 7 2 2 2 -
Low-throughput experiments (2 positive, 1 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Liu Z et al. 2014 WB qP RP Osteosarcoma Tissues N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Western Blot POSITIVE INDIRECT TarBase 7.0
UNKNOWN qPCR NEGATIVE INDIRECT TarBase 7.0
chr8:127741068-127741090 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
High-throughput experiments (7 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr8:127741061-127741089 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr8:127741061-127741089 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr8:127741061-127741089 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr8:127741061-127741089 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr8:127741061-127741089 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr8:127741061-127741089 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr8:127741061-127741089 HITS-CLIP POSITIVE DIRECT TarBase 7.0
MKI67 hsa-miR-135b-5p low: 2 high: 0 1 1 1 -
Low-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Liu Z et al. 2014 WB qP Bone MG63 N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Western Blot POSITIVE INDIRECT TarBase 7.0
UNKNOWN qPCR POSITIVE INDIRECT TarBase 7.0
SMO hsa-miR-135b-5p low: 1 high: 0 1 1 1 -
Low-throughput experiments (0 positive, 1 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Elisab et al. 2008 RP Nervous DAOY DAOY N/A
Location Method Result Regulation Validation Type Source
chr7:129213459-129213481 Luciferase Reporter Assay NEGATIVE DIRECT TarBase 8.0
ACVR1B hsa-miR-135b-5p low: 1 high: 0 1 1 1 -
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Bhinge A. et al. 2014 RP Embryo ESC HEK293T N/A
Location Method Result Regulation Validation Type Source
chr12:51995514-51995536 Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
BMPR2 hsa-miR-135b-5p low: 1 high: 0 1 1 1 -
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Bhinge A. et al. 2014 RP Embryo ESC HEK293T N/A
Location Method Result Regulation Validation Type Source
chr2:202565544-202565566 Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
SMAD5 hsa-miR-135b-5p low: 1 high: 0 1 1 1 -
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Bhinge A. et al. 2014 RP Embryo ESC HEK293T N/A
Location Method Result Regulation Validation Type Source
chr5:136182645-136182667 Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
TGFBR1 hsa-miR-135b-5p low: 1 high: 0 1 1 1 -
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Bhinge A. et al. 2014 RP Embryo ESC HEK293T N/A
Location Method Result Regulation Validation Type Source
chr9:99150365-99150387 Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
EDN1 hsa-miR-135b-5p low: 1 high: 0 1 1 1 -
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Tsai KW. et al. 2015 RP Stomach AGS HEK293T N/A
Location Method Result Regulation Validation Type Source
chr6:12296092-12297166 Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
FAM171B hsa-miR-135b-5p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr2:186763243-186763270 Chimeric fragments POSITIVE DIRECT TarBase 8.0
CLTCL1 hsa-miR-135b-5p low: 0 high: 6 1 1 1 -
High-throughput experiments (6 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr22:19208990-19209016 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr22:19208990-19209016 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:emetine
Location Method Result Regulation Validation Type Source
chr22:19208990-19209016 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr22:19208990-19209016 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr22:19208990-19209016 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr22:19208990-19209016 HITS-CLIP POSITIVE DIRECT TarBase 7.0
CLDN11 hsa-miR-135b-5p low: 0 high: 5 2 5 2 -
High-throughput experiments (5 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Skalsky Rebecca L. et al. 2012 IP N/A LCLBAC N/A N/A
Location Method Result Regulation Validation Type Source
chr3:170433913-170433933 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Skalsky Rebecca L. et al. 2012 IP N/A LCLBACD1 N/A N/A
Location Method Result Regulation Validation Type Source
chr3:170433913-170433933 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Skalsky Rebecca L. et al. 2012 IP N/A LCL35 N/A N/A
Location Method Result Regulation Validation Type Source
chr3:170433913-170433933 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Skalsky Rebecca L. et al. 2012 IP N/A EF3DAGO2 N/A N/A
Location Method Result Regulation Validation Type Source
chr3:170433913-170433933 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Inna Lipchina et al. 2011 IP Embryo ESC N/A T1 RNase treatment
Location Method Result Regulation Validation Type Source
chr3:170433913-170433933 PAR-CLIP POSITIVE DIRECT TarBase 7.0
IRS4 hsa-miR-135b-5p low: 0 high: 3 1 1 1 -
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chrX:108736183-108736207 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chrX:108736183-108736207 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chrX:108736183-108736207 HITS-CLIP POSITIVE DIRECT TarBase 7.0
RBM4B hsa-miR-135b-5p low: 0 high: 3 1 1 1 -
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chrX:132075407-132075434 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chrX:132075407-132075434 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:emetine
Location Method Result Regulation Validation Type Source
chrX:132075407-132075434 HITS-CLIP POSITIVE DIRECT TarBase 7.0
UBN2 hsa-miR-135b-5p low: 0 high: 3 3 3 3 -
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Skalsky Rebecca L. et al. 2012 IP N/A LCL35 N/A N/A
Location Method Result Regulation Validation Type Source
chr7:139307432-139307439 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Inna Lipchina et al. 2011 IP Embryo ESC N/A T1 RNase treatment
Location Method Result Regulation Validation Type Source
chr7:139307432-139307439 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr7:139304180-139304207 HITS-CLIP POSITIVE DIRECT TarBase 7.0
ZNF217 hsa-miR-135b-5p low: 0 high: 3 1 3 1 0.500
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Skalsky Rebecca L. et al. 2012 IP N/A LCLBAC N/A N/A
Location Method Result Regulation Validation Type Source
chr20:53567673-53567696 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Skalsky Rebecca L. et al. 2012 IP N/A LCLBACD3 N/A N/A
Location Method Result Regulation Validation Type Source
chr20:53567673-53567696 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Skalsky Rebecca L. et al. 2012 IP N/A EF3DAGO2 N/A N/A
Location Method Result Regulation Validation Type Source
chr20:53567673-53567696 PAR-CLIP POSITIVE DIRECT TarBase 7.0
RBPJ hsa-miR-135b-5p low: 0 high: 3 1 1 1 -
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr4:26406233-26406255 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr4:26406233-26406255 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr4:26406233-26406255 HITS-CLIP POSITIVE DIRECT TarBase 7.0
RABL6 hsa-miR-135b-5p low: 0 high: 3 1 1 1 -
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:emetine
Location Method Result Regulation Validation Type Source
chr9:136835489-136835515 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr9:136835489-136835515 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr9:136835489-136835515 HITS-CLIP POSITIVE DIRECT TarBase 7.0
CBX6 hsa-miR-135b-5p low: 0 high: 3 1 1 1 -
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr22:38866156-38866184 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr22:38866156-38866184 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr22:38865954-38865978 HITS-CLIP POSITIVE DIRECT TarBase 7.0
QSER1 hsa-miR-135b-5p low: 0 high: 2 2 2 2 0.493
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Inna Lipchina et al. 2011 IP Embryo ESC N/A T1 RNase treatment
Location Method Result Regulation Validation Type Source
chr11:32979450-32979477 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr11:32979450-32979477 HITS-CLIP POSITIVE DIRECT TarBase 7.0
ELMO2 hsa-miR-135b-5p low: 0 high: 2 2 2 2 -
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Inna Lipchina et al. 2011 IP Embryo ESC N/A T1 RNase treatment
Location Method Result Regulation Validation Type Source
chr20:46366241-46366266 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Kameswaran V et al. 2014 IP Pancreas BETA Cells N/A N/A
Location Method Result Regulation Validation Type Source
chr20:46375269-46375297 HITS-CLIP POSITIVE DIRECT TarBase 7.0