Please cite:
Dimitra Karagkouni, Maria D. Paraskevopoulou, Serafeim Chatzopoulos, Ioannis S. Vlachos, Spyros Tastsoglou, Ilias Kanellos, Dimitris Papadimitriou, Ioannis Kavakiotis, Sofia Maniou, Giorgos Skoufos, Thanasis Vergoulis, Theodore Dalamagas, Artemis G. Hatzigeorgiou; DIANA-TarBase v8: a decade-long collection of experimentally supported miRNA–gene interactions, Nucleic Acids Research, gkx1141, https://doi.org/10.1093/nar/gkx1141
Bulk download:
We have updated the bulk download module, which simplifies the download process! Please find the new online form by following this link

hsa-miR-193b-3p


Loading... Please wait, this might take a few seconds...



Filters
Interactions: 1875, Experiments: (low: , high: , unknown: ) Cell lines: , Tissues: , Publications:
Gene name miRNA name Experiments
throughput
Publications Cell lines Tissues Pred. Score
PLAU hsa-miR-193b-3p low: 4 high: 0 1 2 1 -
Low-throughput experiments (4 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Hyangsoon Noh et al. 2011 WB Mammary Gland MDAMB436 N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Western Blot POSITIVE INDIRECT TarBase 7.0
Hyangsoon Noh et al. 2011 WB Mammary Gland MDAMB231 N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Western Blot POSITIVE INDIRECT TarBase 7.0
Hyangsoon Noh et al. 2011 RP Mammary Gland MDAMB436 MDAMB436 N/A
Location Method Result Regulation Validation Type Source
chr10:73917327-73917349 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
Hyangsoon Noh et al. 2011 RP Mammary Gland MDAMB231 MDAMB231 N/A
Location Method Result Regulation Validation Type Source
chr10:73917327-73917349 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
CCND1 hsa-miR-193b-3p low: 4 high: 6 7 6 5 -
Low-throughput experiments (4 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Jiamin Chen et al. 2010 WB qP O N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Western Blot POSITIVE INDIRECT TarBase 6.0
UNKNOWN qPCR POSITIVE INDIRECT TarBase 6.0
UNKNOWN Other POSITIVE INDIRECT TarBase 6.0
Jiamin Chen et al. 2010 RP Lung MALME3MR MALME3MR N/A
Location Method Result Regulation Validation Type Source
chr11:69652484-69652947 Luciferase Reporter Assay POSITIVE DIRECT TarBase 6.0
High-throughput experiments (6 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr11:69652716-69652739 Chimeric fragments POSITIVE DIRECT TarBase 8.0
Pillai MM et al. 2014 IP Mammary Gland MCF7 N/A N/A
Location Method Result Regulation Validation Type Source
chr11:69652712-69652736 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Pillai MM et al. 2014 IP Mammary Gland BT474 N/A N/A
Location Method Result Regulation Validation Type Source
chr11:69652712-69652736 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Farazi Thalia A et al. 2014 IP Mammary Gland MCF7 N/A N/A
Location Method Result Regulation Validation Type Source
chr11:69652712-69652736 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Jiamin Chen et al. 2010 MA N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Microarrays POSITIVE INDIRECT TarBase 6.0
Balakrishnan I et al. 2014 IP Bone Marrow HS5 N/A N/A
Location Method Result Regulation Validation Type Source
chr11:69652712-69652736 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Other Databases
Publication Methods Tissue Cell line Tested cell line Exp. condition
Chengwang Xu et al. 2010 O N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Other UNKNOWN UNKNOWN miRTarBase
Helwak Aleksandra et al. 2013 O N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Other UNKNOWN UNKNOWN miRTarBase
Jiamin Chen et al. 2010 O N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Other UNKNOWN UNKNOWN miRTarBase
SHMT2 hsa-miR-193b-3p low: 2 high: 3 3 3 3 -
Low-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Suvi-Katri Leivonen et al. 2011 RP Mammary Gland MCF7 MCF7 N/A
Location Method Result Regulation Validation Type Source
chr12:57234645-57234667 Luciferase Reporter Assay POSITIVE DIRECT TarBase 6.0
chr12:57234403-57234425 Luciferase Reporter Assay POSITIVE DIRECT TarBase 6.0
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Suvi-Katri Leivonen et al. 2011 PR N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN pSILAC POSITIVE INDIRECT TarBase 6.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr12:57234410-57234424 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Jiamin Chen et al. 2010 MA N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Microarrays POSITIVE INDIRECT TarBase 6.0
ESR1 hsa-miR-193b-3p low: 1 high: 1 2 2 1 -
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
S-K Leivonen et al. 2009 RP Mammary Gland MCF7 MCF7 N/A
Location Method Result Regulation Validation Type Source
chr6:152102937-152102996 Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Pillai MM et al. 2014 IP Mammary Gland BT474 N/A N/A
Location Method Result Regulation Validation Type Source
chr6:152102956-152102978 HITS-CLIP POSITIVE DIRECT TarBase 7.0
AKR1C2 hsa-miR-193b-3p low: 1 high: 1 1 2 2 -
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Suvi-Katri Leivonen et al. 2011 RP Mammary Gland MCF7 MCF7 N/A
Location Method Result Regulation Validation Type Source
chr10:5003842-5003869 Luciferase Reporter Assay POSITIVE DIRECT TarBase 6.0
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Suvi-Katri Leivonen et al. 2011 PR N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN pSILAC POSITIVE INDIRECT TarBase 6.0
YWHAZ hsa-miR-193b-3p low: 1 high: 1 1 2 2 -
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Suvi-Katri Leivonen et al. 2011 RP Mammary Gland MCF7 MCF7 N/A
Location Method Result Regulation Validation Type Source
chr8:100920390-100920412 Luciferase Reporter Assay POSITIVE DIRECT TarBase 6.0
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Suvi-Katri Leivonen et al. 2011 PR N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN pSILAC POSITIVE INDIRECT TarBase 6.0
KRAS hsa-miR-193b-3p low: 1 high: 0 1 1 1 -
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Gastaldi C. et al. 2014 RP Skin Cutaneous Squamous Cell Carcinoma COS7 N/A
Location Method Result Regulation Validation Type Source
chr12:25209607-25209630 Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
MAX hsa-miR-193b-3p low: 1 high: 0 1 1 1 -
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Gastaldi C. et al. 2014 RP Skin Cutaneous Squamous Cell Carcinoma COS7 N/A
Location Method Result Regulation Validation Type Source
chr14:65075661-65075684 Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
CAPNS1 hsa-miR-193b-3p low: 0 high: 3 2 2 2 -
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Pillai MM et al. 2014 IP Mammary Gland MCF7 N/A N/A
Location Method Result Regulation Validation Type Source
chr19:36150319-36150342 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Helwak Aleksandra et al. 2013 IP Kidney FLPIN_TREX_293 N/A N/A
Location Method Result Regulation Validation Type Source
chr19:36150126-36150198 CLASH POSITIVE DIRECT TarBase 7.0
chr19:36145820-36145872 CLASH POSITIVE DIRECT TarBase 7.0
CTDSPL2 hsa-miR-193b-3p low: 0 high: 7 5 7 5 0.956
High-throughput experiments (7 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Xue Y et al. 2013 IP Cervix HELA N/A Hela cells were treated with control shRNA.
Location Method Result Regulation Validation Type Source
chr15:44524595-44524614 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Skalsky Rebecca L. et al. 2012 IP N/A LCLBAC N/A N/A
Location Method Result Regulation Validation Type Source
chr15:44524595-44524614 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Skalsky Rebecca L. et al. 2012 IP N/A LCLBACD3 N/A N/A
Location Method Result Regulation Validation Type Source
chr15:44524595-44524614 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Skalsky Rebecca L. et al. 2012 IP N/A EF3DAGO2 N/A N/A
Location Method Result Regulation Validation Type Source
chr15:44524595-44524614 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Pillai MM et al. 2014 IP Mammary Gland BT474 N/A N/A
Location Method Result Regulation Validation Type Source
chr15:44524595-44524614 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Helwak Aleksandra et al. 2013 IP Kidney FLPIN_TREX_293 N/A N/A
Location Method Result Regulation Validation Type Source
chr15:44527784-44527834 CLASH POSITIVE DIRECT TarBase 7.0
Eva Gottwein et al. 2011 IP Pleura BC1 N/A N/A
Location Method Result Regulation Validation Type Source
chr15:44524595-44524614 PAR-CLIP POSITIVE DIRECT TarBase 7.0
ABI2 hsa-miR-193b-3p low: 0 high: 5 4 5 4 -
High-throughput experiments (5 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr2:203428392-203428418 Chimeric fragments POSITIVE DIRECT TarBase 8.0
Pillai MM et al. 2014 IP Mammary Gland MCF7 N/A N/A
Location Method Result Regulation Validation Type Source
chr2:203428390-203428412 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Pillai MM et al. 2014 IP Mammary Gland BT474 N/A N/A
Location Method Result Regulation Validation Type Source
chr2:203428390-203428412 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Jiamin Chen et al. 2010 MA N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Microarrays POSITIVE INDIRECT TarBase 6.0
Balakrishnan I et al. 2014 IP Bone Marrow HS5 N/A N/A
Location Method Result Regulation Validation Type Source
chr2:203428390-203428412 HITS-CLIP POSITIVE DIRECT TarBase 7.0
CCNT2 hsa-miR-193b-3p low: 0 high: 3 3 3 3 0.570
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr2:134956267-134956289 Chimeric fragments POSITIVE DIRECT TarBase 8.0
Skalsky Rebecca L. et al. 2012 IP N/A EF3DAGO2 N/A N/A
Location Method Result Regulation Validation Type Source
chr2:134956265-134956287 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Eva Gottwein et al. 2011 IP Pleura BC1 N/A N/A
Location Method Result Regulation Validation Type Source
chr2:134956265-134956287 PAR-CLIP POSITIVE DIRECT TarBase 7.0
ZMAT3 hsa-miR-193b-3p low: 0 high: 3 3 3 3 0.836
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr3:179022562-179022584 Chimeric fragments POSITIVE DIRECT TarBase 8.0
Pillai MM et al. 2014 IP Mammary Gland MCF7 N/A N/A
Location Method Result Regulation Validation Type Source
chr3:179025150-179025172 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Balakrishnan I et al. 2014 IP Bone Marrow HMSC N/A N/A
Location Method Result Regulation Validation Type Source
chr3:179022179-179022202 HITS-CLIP POSITIVE DIRECT TarBase 7.0
USP24 hsa-miR-193b-3p low: 0 high: 2 2 2 2 -
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Skalsky Rebecca L. et al. 2012 IP N/A LCLBACD3 N/A N/A
Location Method Result Regulation Validation Type Source
chr1:55148545-55148563 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Helwak Aleksandra et al. 2013 IP Kidney FLPIN_TREX_293 N/A N/A
Location Method Result Regulation Validation Type Source
chr1:55067559-55067606 CLASH POSITIVE DIRECT TarBase 7.0
FAM50A hsa-miR-193b-3p low: 0 high: 1 1 2 2 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Helwak Aleksandra et al. 2013 IP Kidney FLPIN_TREX_293 N/A N/A
Location Method Result Regulation Validation Type Source
chrX:154450221-154450279 CLASH POSITIVE DIRECT TarBase 7.0
Other Databases
Publication Methods Tissue Cell line Tested cell line Exp. condition
Helwak Aleksandra et al. 2013 O N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Other UNKNOWN UNKNOWN miRTarBase
AGO1 hsa-miR-193b-3p low: 0 high: 1 1 2 2 0.634
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Helwak Aleksandra et al. 2013 IP Kidney FLPIN_TREX_293 N/A N/A
Location Method Result Regulation Validation Type Source
chr1:35893125-35893176 CLASH POSITIVE DIRECT TarBase 7.0
Other Databases
Publication Methods Tissue Cell line Tested cell line Exp. condition
Helwak Aleksandra et al. 2013 O N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Other UNKNOWN UNKNOWN miRTarBase
NCL hsa-miR-193b-3p low: 0 high: 1 1 2 2 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Helwak Aleksandra et al. 2013 IP Kidney FLPIN_TREX_293 N/A N/A
Location Method Result Regulation Validation Type Source
chr2:231456654-231456703 CLASH POSITIVE DIRECT TarBase 7.0
Other Databases
Publication Methods Tissue Cell line Tested cell line Exp. condition
Helwak Aleksandra et al. 2013 O N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Other UNKNOWN UNKNOWN miRTarBase
TRAK2 hsa-miR-193b-3p low: 0 high: 1 1 2 2 0.578
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Helwak Aleksandra et al. 2013 IP Kidney FLPIN_TREX_293 N/A N/A
Location Method Result Regulation Validation Type Source
chr2:201380280-201380328 CLASH POSITIVE DIRECT TarBase 7.0
Other Databases
Publication Methods Tissue Cell line Tested cell line Exp. condition
Helwak Aleksandra et al. 2013 O N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Other UNKNOWN UNKNOWN miRTarBase
ABT1 hsa-miR-193b-3p low: 0 high: 1 1 2 2 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Helwak Aleksandra et al. 2013 IP Kidney FLPIN_TREX_293 N/A N/A
Location Method Result Regulation Validation Type Source
chr6:26598469-26598521 CLASH POSITIVE DIRECT TarBase 7.0
Other Databases
Publication Methods Tissue Cell line Tested cell line Exp. condition
Helwak Aleksandra et al. 2013 O N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Other UNKNOWN UNKNOWN miRTarBase
PGAM1 hsa-miR-193b-3p low: 0 high: 1 1 2 2 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Helwak Aleksandra et al. 2013 IP Kidney FLPIN_TREX_293 N/A N/A
Location Method Result Regulation Validation Type Source
chr10:97430504-97430561 CLASH POSITIVE DIRECT TarBase 7.0
Other Databases
Publication Methods Tissue Cell line Tested cell line Exp. condition
Helwak Aleksandra et al. 2013 O N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Other UNKNOWN UNKNOWN miRTarBase