Please cite:
Dimitra Karagkouni, Maria D. Paraskevopoulou, Serafeim Chatzopoulos, Ioannis S. Vlachos, Spyros Tastsoglou, Ilias Kanellos, Dimitris Papadimitriou, Ioannis Kavakiotis, Sofia Maniou, Giorgos Skoufos, Thanasis Vergoulis, Theodore Dalamagas, Artemis G. Hatzigeorgiou; DIANA-TarBase v8: a decade-long collection of experimentally supported miRNA–gene interactions, Nucleic Acids Research, gkx1141, https://doi.org/10.1093/nar/gkx1141
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hsa-miR-197-3p


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Interactions: 625, Experiments: (low: , high: , unknown: ) Cell lines: , Tissues: , Publications:
Gene name miRNA name Experiments
throughput
Publications Cell lines Tissues Pred. Score
CD82 hsa-miR-197-3p low: 6 high: 0 1 2 1 -
Low-throughput experiments (2 positive, 4 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Weiqi Dai et al. 2014 WB qP Liver MHCC97H N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Western Blot NEGATIVE INDIRECT TarBase 7.0
UNKNOWN qPCR NEGATIVE INDIRECT TarBase 7.0
Weiqi Dai et al. 2014 WB qP Liver HCCLM3 N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Western Blot NEGATIVE INDIRECT TarBase 7.0
UNKNOWN qPCR NEGATIVE INDIRECT TarBase 7.0
Weiqi Dai et al. 2014 RP Liver MHCC97H MHCC97H N/A
Location Method Result Regulation Validation Type Source
chr11:44619563-44619585 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
Weiqi Dai et al. 2014 RP Liver HCCLM3 HCCLM3 N/A
Location Method Result Regulation Validation Type Source
chr11:44619563-44619585 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
CTNND1 hsa-miR-197-3p low: 2 high: 0 1 2 1 -
Low-throughput experiments (0 positive, 2 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Xing AY. et al. 2015 RP Gastric MKN28 MKN28 N/A
Location Method Result Regulation Validation Type Source
chr11:57818731-57818753 Luciferase Reporter Assay NEGATIVE DIRECT TarBase 8.0
Xing AY. et al. 2015 RP Gastric SGC7901 SGC7901 N/A
Location Method Result Regulation Validation Type Source
chr11:57818731-57818753 Luciferase Reporter Assay NEGATIVE DIRECT TarBase 8.0
SRCAP hsa-miR-197-3p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Helwak Aleksandra et al. 2013 IP Kidney FLPIN_TREX_293 N/A N/A
Location Method Result Regulation Validation Type Source
chr16:30711035-30711081 CLASH POSITIVE DIRECT TarBase 7.0
NUS1 hsa-miR-197-3p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Helwak Aleksandra et al. 2013 IP Kidney FLPIN_TREX_293 N/A N/A
Location Method Result Regulation Validation Type Source
chr6:117707240-117707291 CLASH POSITIVE DIRECT TarBase 7.0
IARS2 hsa-miR-197-3p low: 0 high: 1 1 1 1 0.528
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Helwak Aleksandra et al. 2013 IP Kidney FLPIN_TREX_293 N/A N/A
Location Method Result Regulation Validation Type Source
chr1:220147745-220147794 CLASH POSITIVE DIRECT TarBase 7.0
SH3BP2 hsa-miR-197-3p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Helwak Aleksandra et al. 2013 IP Kidney FLPIN_TREX_293 N/A N/A
Location Method Result Regulation Validation Type Source
chr4:2835948-2836000 CLASH POSITIVE DIRECT TarBase 7.0
METTL4 hsa-miR-197-3p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Helwak Aleksandra et al. 2013 IP Kidney FLPIN_TREX_293 N/A N/A
Location Method Result Regulation Validation Type Source
chr18:2567150-2567193 CLASH POSITIVE DIRECT TarBase 7.0
RPL22 hsa-miR-197-3p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Helwak Aleksandra et al. 2013 IP Kidney FLPIN_TREX_293 N/A N/A
Location Method Result Regulation Validation Type Source
chr1:6192961-6193043 CLASH POSITIVE DIRECT TarBase 7.0
RAD23B hsa-miR-197-3p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Helwak Aleksandra et al. 2013 IP Kidney FLPIN_TREX_293 N/A N/A
Location Method Result Regulation Validation Type Source
chr9:107330789-107330846 CLASH POSITIVE DIRECT TarBase 7.0
ACVR1B hsa-miR-197-3p low: 0 high: 1 1 1 1 0.603
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Helwak Aleksandra et al. 2013 IP Kidney FLPIN_TREX_293 N/A N/A
Location Method Result Regulation Validation Type Source
chr12:51995309-51995352 CLASH POSITIVE DIRECT TarBase 7.0
HSPD1 hsa-miR-197-3p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Helwak Aleksandra et al. 2013 IP Kidney FLPIN_TREX_293 N/A N/A
Location Method Result Regulation Validation Type Source
chr2:197487011-197487113 CLASH POSITIVE DIRECT TarBase 7.0
NIN hsa-miR-197-3p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr14:50722314-50722338 Chimeric fragments POSITIVE DIRECT TarBase 8.0
ERBB2 hsa-miR-197-3p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Moore M et al. 2015 IP Liver HUH7.5 N/A N/A
Location Method Result Regulation Validation Type Source
chr17:39708430-39708505 CLEAR-CLIP POSITIVE DIRECT TarBase 8.0
DTL hsa-miR-197-3p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Moore M et al. 2015 IP Liver HUH7.5 N/A N/A
Location Method Result Regulation Validation Type Source
chr1:212103538-212103613 CLEAR-CLIP POSITIVE DIRECT TarBase 8.0
KALRN hsa-miR-197-3p low: 0 high: 8 1 1 1 -
High-throughput experiments (8 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr3:124719435-124719457 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr3:124719435-124719457 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr3:124719435-124719457 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chr3:124719435-124719457 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr3:124719435-124719457 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr3:124719435-124719457 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr3:124719435-124719457 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr3:124719435-124719457 HITS-CLIP POSITIVE DIRECT TarBase 7.0
ATP6V0E1 hsa-miR-197-3p low: 0 high: 7 2 5 2 0.592
High-throughput experiments (7 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Skalsky Rebecca L. et al. 2012 IP N/A LCLBAC N/A N/A
Location Method Result Regulation Validation Type Source
chr5:173034558-173034565 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Skalsky Rebecca L. et al. 2012 IP N/A LCLBACD1 N/A N/A
Location Method Result Regulation Validation Type Source
chr5:173034558-173034565 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Skalsky Rebecca L. et al. 2012 IP N/A LCL35 N/A N/A
Location Method Result Regulation Validation Type Source
chr5:173034558-173034565 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Skalsky Rebecca L. et al. 2012 IP N/A EF3DAGO2 N/A N/A
Location Method Result Regulation Validation Type Source
chr5:173034558-173034565 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr5:173034558-173034565 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr5:173034558-173034565 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr5:173034558-173034565 HITS-CLIP POSITIVE DIRECT TarBase 7.0
NUCKS1 hsa-miR-197-3p low: 0 high: 7 4 5 4 0.553
High-throughput experiments (7 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Xue Y et al. 2013 IP Cervix HELA N/A Hela cells were treated with control shRNA.
Location Method Result Regulation Validation Type Source
chr1:205715902-205715920 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Pillai MM et al. 2014 IP Mammary Gland MDAMB231 N/A N/A
Location Method Result Regulation Validation Type Source
chr1:205715902-205715920 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr1:205714394-205714415 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Pillai MM et al. 2014 IP Mammary Gland BT474 N/A N/A
Location Method Result Regulation Validation Type Source
chr1:205715902-205715920 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr1:205715763-205715785 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr1:205715763-205715785 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Eva Gottwein et al. 2011 IP Pleura BC1 N/A N/A
Location Method Result Regulation Validation Type Source
chr1:205715763-205715785 PAR-CLIP POSITIVE DIRECT TarBase 7.0
MKNK2 hsa-miR-197-3p low: 0 high: 7 1 1 1 -
High-throughput experiments (7 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr19:2037566-2037572 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr19:2037566-2037572 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr19:2037566-2037572 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chr19:2037566-2037572 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr19:2037566-2037572 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr19:2037566-2037572 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr19:2037566-2037572 HITS-CLIP POSITIVE DIRECT TarBase 7.0
RPS6 hsa-miR-197-3p low: 0 high: 7 1 1 1 -
High-throughput experiments (7 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr9:19379496-19379518 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr9:19379496-19379518 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:emetine
Location Method Result Regulation Validation Type Source
chr9:19379496-19379518 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr9:19379496-19379518 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr9:19379496-19379518 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr9:19379496-19379518 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr9:19379496-19379518 HITS-CLIP POSITIVE DIRECT TarBase 7.0
RPL37A hsa-miR-197-3p low: 0 high: 5 3 4 3 -
High-throughput experiments (5 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr2:216499319-216499346 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr2:216499319-216499346 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Haecker Irina et al. 2012 IP Bone Marrow BCBL1 N/A N/A
Location Method Result Regulation Validation Type Source
chr2:216499319-216499346 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Haecker Irina et al. 2012 IP Pleura BC3 N/A N/A
Location Method Result Regulation Validation Type Source
chr2:216499319-216499346 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Balakrishnan I et al. 2014 IP Bone Marrow HMSC N/A N/A
Location Method Result Regulation Validation Type Source
chr2:216499319-216499346 HITS-CLIP POSITIVE DIRECT TarBase 7.0