Please cite:
Dimitra Karagkouni, Maria D. Paraskevopoulou, Serafeim Chatzopoulos, Ioannis S. Vlachos, Spyros Tastsoglou, Ilias Kanellos, Dimitris Papadimitriou, Ioannis Kavakiotis, Sofia Maniou, Giorgos Skoufos, Thanasis Vergoulis, Theodore Dalamagas, Artemis G. Hatzigeorgiou; DIANA-TarBase v8: a decade-long collection of experimentally supported miRNA–gene interactions, Nucleic Acids Research, gkx1141, https://doi.org/10.1093/nar/gkx1141
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hsa-miR-200a-3p


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Filters
Interactions: 777, Experiments: (low: , high: , unknown: ) Cell lines: , Tissues: , Publications:
Gene name miRNA name Experiments
throughput
Publications Cell lines Tissues Pred. Score
PTEN hsa-miR-200a-3p low: 6 high: 1 2 3 3 0.917
Low-throughput experiments (6 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Li H. et al. 2014 RP Bone Marrow SHSY5Y SHSY5Y N/A
Location Method Result Regulation Validation Type Source
chr10:87968714-87968739 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
Li H. et al. 2014 WB qP Bone Marrow SHSY5Y N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Western Blot POSITIVE INDIRECT TarBase 7.0
UNKNOWN qPCR POSITIVE INDIRECT TarBase 7.0
Li H. et al. 2014 WB qP Kidney HEK293T N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Western Blot POSITIVE INDIRECT TarBase 7.0
UNKNOWN qPCR POSITIVE INDIRECT TarBase 7.0
Li H. et al. 2014 RP Kidney HEK293T HEK293T N/A
Location Method Result Regulation Validation Type Source
chr10:87968714-87968739 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Kameswaran V et al. 2014 IP Pancreas BETA Cells N/A N/A
Location Method Result Regulation Validation Type Source
chr10:87968711-87968735 HITS-CLIP POSITIVE DIRECT TarBase 7.0
CTNNB1 hsa-miR-200a-3p low: 6 high: 0 1 2 2 0.759
Low-throughput experiments (6 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
SU JUAN et al. 2011 RP Brain U251 U251 N/A
Location Method Result Regulation Validation Type Source
chr3:41240024-41240046 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
SU JUAN et al. 2011 RP Gastric SGC7901 SGC7901 N/A
Location Method Result Regulation Validation Type Source
chr3:41240024-41240046 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
SU JUAN et al. 2011 WB qP Brain U251 N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Western Blot POSITIVE INDIRECT TarBase 7.0
UNKNOWN qPCR POSITIVE INDIRECT TarBase 7.0
SU JUAN et al. 2011 WB qP Gastric SGC7901 N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Western Blot POSITIVE INDIRECT TarBase 7.0
UNKNOWN qPCR POSITIVE INDIRECT TarBase 7.0
GAPDH hsa-miR-200a-3p low: 4 high: 0 1 2 2 -
Low-throughput experiments (0 positive, 4 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Li H. et al. 2014 WB qP Bone Marrow SHSY5Y N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Western Blot NEGATIVE INDIRECT TarBase 7.0
UNKNOWN qPCR NEGATIVE INDIRECT TarBase 7.0
Li H. et al. 2014 WB qP Kidney HEK293T N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Western Blot NEGATIVE INDIRECT TarBase 7.0
UNKNOWN qPCR NEGATIVE INDIRECT TarBase 7.0
TFAP2C hsa-miR-200a-3p low: 3 high: 1 2 2 2 0.823
Low-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Gao SL et al. 2014 RP Brain SKNAS SKNAS N/A
Location Method Result Regulation Validation Type Source
chr20:56638409-56638431 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
Gao SL et al. 2014 WB qP Brain SKNAS N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Western Blot POSITIVE INDIRECT TarBase 7.0
UNKNOWN qPCR POSITIVE INDIRECT TarBase 7.0
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Pillai MM et al. 2014 IP Mammary Gland BT474 N/A N/A
Location Method Result Regulation Validation Type Source
chr20:56638404-56638431 HITS-CLIP POSITIVE DIRECT TarBase 7.0
CTNNB1 hsa-miR-200a-3p low: 3 high: 0 1 2 2 -
Low-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Hongping Xia et al. 2010 WB qP N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Western Blot POSITIVE INDIRECT TarBase 6.0
UNKNOWN qPCR POSITIVE INDIRECT TarBase 6.0
Hongping Xia et al. 2010 RP Head/Neck C6661 C6661 N/A
Location Method Result Regulation Validation Type Source
chr3:41240024-41240046 Luciferase Reporter Assay POSITIVE DIRECT TarBase 6.0
ZEB2 hsa-miR-200a-3p low: 3 high: 0 2 2 2 -
Low-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Hongping Xia et al. 2010 WB qP N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Western Blot POSITIVE INDIRECT TarBase 6.0
UNKNOWN qPCR POSITIVE INDIRECT TarBase 6.0
SU JUAN et al. 2011 WB Gastric SGC7901 N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Western Blot POSITIVE INDIRECT TarBase 7.0
WDR37 hsa-miR-200a-3p low: 2 high: 2 3 4 3 -
Low-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Seogang Hyun et al. 2009 RP Liver HEP3B HEP3B N/A
Location Method Result Regulation Validation Type Source
chr10:1131336-1132251 Luciferase Reporter Assay POSITIVE DIRECT TarBase 6.0
Seogang Hyun et al. 2009 RP Cervix HELA HELA N/A
Location Method Result Regulation Validation Type Source
chr10:1131336-1132251 Luciferase Reporter Assay POSITIVE DIRECT TarBase 6.0
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Pillai MM et al. 2014 IP Mammary Gland BT474 N/A N/A
Location Method Result Regulation Validation Type Source
chr10:1131749-1131776 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Meiyun Fan et al. 2013 IP Mammary Gland MCF7 N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN AGO-IP POSITIVE INDIRECT TarBase 7.0
SEPT7 hsa-miR-200a-3p low: 2 high: 1 2 3 3 -
Low-throughput experiments (0 positive, 2 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Seogang Hyun et al. 2009 RP Liver HEP3B HEP3B N/A
Location Method Result Regulation Validation Type Source
chr7:35904330-35905172 Luciferase Reporter Assay NEGATIVE DIRECT TarBase 6.0
Seogang Hyun et al. 2009 RP Cervix HELA HELA N/A
Location Method Result Regulation Validation Type Source
chr7:35904330-35905172 Luciferase Reporter Assay NEGATIVE DIRECT TarBase 6.0
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Xue Y et al. 2013 IP Cervix HELA N/A Hela cells were treated with control shRNA.
Location Method Result Regulation Validation Type Source
chr7:35873724-35873745 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Other Databases
Publication Methods Tissue Cell line Tested cell line Exp. condition
Seogang Hyun et al. 2009 O N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Other UNKNOWN UNKNOWN miRTarBase
BAP1 hsa-miR-200a-3p low: 2 high: 0 2 3 3 -
Low-throughput experiments (0 positive, 2 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Seogang Hyun et al. 2009 RP Liver HEP3B HEP3B N/A
Location Method Result Regulation Validation Type Source
chr3:52401371-52402254 Luciferase Reporter Assay NEGATIVE DIRECT TarBase 6.0
Seogang Hyun et al. 2009 RP Cervix HELA HELA N/A
Location Method Result Regulation Validation Type Source
chr3:52401371-52402254 Luciferase Reporter Assay NEGATIVE DIRECT TarBase 6.0
Other Databases
Publication Methods Tissue Cell line Tested cell line Exp. condition
Seogang Hyun et al. 2009 O N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Other UNKNOWN UNKNOWN miRTarBase
Marilena V Iorio et al. 2007 O N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Other UNKNOWN UNKNOWN miRTarBase
KLHL20 hsa-miR-200a-3p low: 2 high: 0 1 3 3 0.497
Low-throughput experiments (0 positive, 2 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Seogang Hyun et al. 2009 RP Liver HEP3B HEP3B N/A
Location Method Result Regulation Validation Type Source
chr1:173786492-173786677 Luciferase Reporter Assay NEGATIVE DIRECT TarBase 6.0
Seogang Hyun et al. 2009 RP Cervix HELA HELA N/A
Location Method Result Regulation Validation Type Source
chr1:173786492-173786677 Luciferase Reporter Assay NEGATIVE DIRECT TarBase 6.0
Other Databases
Publication Methods Tissue Cell line Tested cell line Exp. condition
Seogang Hyun et al. 2009 O N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Other UNKNOWN UNKNOWN miRTarBase
HOXB5 hsa-miR-200a-3p low: 2 high: 0 1 3 3 -
Low-throughput experiments (0 positive, 2 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Seogang Hyun et al. 2009 RP Liver HEP3B HEP3B N/A
Location Method Result Regulation Validation Type Source
chr17:48591344-48592181 Luciferase Reporter Assay NEGATIVE DIRECT TarBase 6.0
Seogang Hyun et al. 2009 RP Cervix HELA HELA N/A
Location Method Result Regulation Validation Type Source
chr17:48591344-48592181 Luciferase Reporter Assay NEGATIVE DIRECT TarBase 6.0
Other Databases
Publication Methods Tissue Cell line Tested cell line Exp. condition
Seogang Hyun et al. 2009 O N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Other UNKNOWN UNKNOWN miRTarBase
RIN2 hsa-miR-200a-3p low: 2 high: 0 1 3 3 -
Low-throughput experiments (0 positive, 2 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Seogang Hyun et al. 2009 RP Liver HEP3B HEP3B N/A
Location Method Result Regulation Validation Type Source
chr20:20000973-20002147 Luciferase Reporter Assay NEGATIVE DIRECT TarBase 6.0
Seogang Hyun et al. 2009 RP Cervix HELA HELA N/A
Location Method Result Regulation Validation Type Source
chr20:20000973-20002147 Luciferase Reporter Assay NEGATIVE DIRECT TarBase 6.0
Other Databases
Publication Methods Tissue Cell line Tested cell line Exp. condition
Seogang Hyun et al. 2009 O N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Other UNKNOWN UNKNOWN miRTarBase
ELMO2 hsa-miR-200a-3p low: 2 high: 0 1 2 2 -
Low-throughput experiments (0 positive, 2 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Seogang Hyun et al. 2009 RP Liver HEP3B HEP3B N/A
Location Method Result Regulation Validation Type Source
chr20:46366200-46366477 Luciferase Reporter Assay NEGATIVE DIRECT TarBase 6.0
Seogang Hyun et al. 2009 RP Cervix HELA HELA N/A
Location Method Result Regulation Validation Type Source
chr20:46366200-46366477 Luciferase Reporter Assay NEGATIVE DIRECT TarBase 6.0
MMP9 hsa-miR-200a-3p low: 2 high: 0 1 2 2 -
Low-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
SU JUAN et al. 2011 WB Brain U251 N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Western Blot POSITIVE INDIRECT TarBase 7.0
SU JUAN et al. 2011 WB Gastric SGC7901 N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Western Blot POSITIVE INDIRECT TarBase 7.0
RASSF2 hsa-miR-200a-3p low: 2 high: 0 1 2 2 -
Low-throughput experiments (0 positive, 2 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Seogang Hyun et al. 2009 RP Liver HEP3B HEP3B N/A
Location Method Result Regulation Validation Type Source
chr20:4780117-4783989 Luciferase Reporter Assay NEGATIVE DIRECT TarBase 6.0
Seogang Hyun et al. 2009 RP Cervix HELA HELA N/A
Location Method Result Regulation Validation Type Source
chr20:4780117-4783989 Luciferase Reporter Assay NEGATIVE DIRECT TarBase 6.0
VAC14 hsa-miR-200a-3p low: 2 high: 0 1 2 2 -
Low-throughput experiments (0 positive, 2 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Seogang Hyun et al. 2009 RP Liver HEP3B HEP3B N/A
Location Method Result Regulation Validation Type Source
chr16:70687516-70687865 Luciferase Reporter Assay NEGATIVE DIRECT TarBase 6.0
Seogang Hyun et al. 2009 RP Cervix HELA HELA N/A
Location Method Result Regulation Validation Type Source
chr16:70687516-70687865 Luciferase Reporter Assay NEGATIVE DIRECT TarBase 6.0
CCND1 hsa-miR-200a-3p low: 2 high: 0 1 2 2 0.465
Low-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
SU JUAN et al. 2011 WB Brain U251 N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Western Blot POSITIVE INDIRECT TarBase 7.0
SU JUAN et al. 2011 WB Gastric SGC7901 N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Western Blot POSITIVE INDIRECT TarBase 7.0
ERBB2IP hsa-miR-200a-3p low: 2 high: 0 1 2 2 -
Low-throughput experiments (0 positive, 2 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Seogang Hyun et al. 2009 RP Liver HEP3B HEP3B N/A
Location Method Result Regulation Validation Type Source
chr5:66079151-66080910 Luciferase Reporter Assay NEGATIVE DIRECT TarBase 6.0
Seogang Hyun et al. 2009 RP Cervix HELA HELA N/A
Location Method Result Regulation Validation Type Source
chr5:66079151-66080910 Luciferase Reporter Assay NEGATIVE DIRECT TarBase 6.0
WNT5A hsa-miR-200a-3p low: 2 high: 0 1 1 1 -
Low-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Balakrishnan I et al. 2014 WB Bone Marrow HS5 N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Western Blot POSITIVE INDIRECT TarBase 7.0
Balakrishnan I et al. 2014 RP Bone Marrow HS5 HEK293T N/A
Location Method Result Regulation Validation Type Source
chr3:55466764-55466787 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
TCF7L1 hsa-miR-200a-3p low: 2 high: 0 1 2 2 -
Low-throughput experiments (0 positive, 2 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Seogang Hyun et al. 2009 RP Liver HEP3B HEP3B N/A
Location Method Result Regulation Validation Type Source
chr2:85309491-85310320 Luciferase Reporter Assay NEGATIVE DIRECT TarBase 6.0
Seogang Hyun et al. 2009 RP Cervix HELA HELA N/A
Location Method Result Regulation Validation Type Source
chr2:85309491-85310320 Luciferase Reporter Assay NEGATIVE DIRECT TarBase 6.0