Please cite:
Dimitra Karagkouni, Maria D. Paraskevopoulou, Serafeim Chatzopoulos, Ioannis S. Vlachos, Spyros Tastsoglou, Ilias Kanellos, Dimitris Papadimitriou, Ioannis Kavakiotis, Sofia Maniou, Giorgos Skoufos, Thanasis Vergoulis, Theodore Dalamagas, Artemis G. Hatzigeorgiou; DIANA-TarBase v8: a decade-long collection of experimentally supported miRNA–gene interactions, Nucleic Acids Research, gkx1141, https://doi.org/10.1093/nar/gkx1141
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hsa-miR-301a-3p


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Filters
Interactions: 1515, Experiments: (low: , high: , unknown: ) Cell lines: , Tissues: , Publications:
Gene name miRNA name Experiments
throughput
Publications Cell lines Tissues Pred. Score
SMAD4 hsa-miR-301a-3p low: 5 high: 2 3 4 3 -
Low-throughput experiments (5 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Liu Lin et al. 2013 RP Intestine SW480 SW480 N/A
Location Method Result Regulation Validation Type Source
chr18:51079807-51079829 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
Liu Lin et al. 2013 WB qP Intestine SW480 N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Western Blot POSITIVE INDIRECT TarBase 7.0
UNKNOWN qPCR POSITIVE INDIRECT TarBase 7.0
Liu Lin et al. 2013 WB Intestine HCT116 N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Western Blot POSITIVE INDIRECT TarBase 7.0
Liu Lin et al. 2013 RP Intestine HCT116 HCT116 N/A
Location Method Result Regulation Validation Type Source
chr18:51079807-51079829 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Kishore S et al. 2011 IP Kidney HEK293 N/A mild MNase digestion
Location Method Result Regulation Validation Type Source
chr18:51079818-51079828 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Eva Gottwein et al. 2011 IP Pleura BC1 N/A N/A
Location Method Result Regulation Validation Type Source
chr18:51079818-51079828 PAR-CLIP POSITIVE DIRECT TarBase 7.0
FOXF2 hsa-miR-301a-3p low: 5 high: 1 2 3 2 -
Low-throughput experiments (5 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Wei Shi et al. 2011 WB qP Mammary Gland MDAMB231 N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Western Blot POSITIVE INDIRECT TarBase 7.0
UNKNOWN qPCR POSITIVE INDIRECT TarBase 7.0
Wei Shi et al. 2011 qP Mammary Gland MCF7 N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN qPCR POSITIVE INDIRECT TarBase 7.0
Wei Shi et al. 2011 RP Mammary Gland MDAMB231 MDAMB231 N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
Wei Shi et al. 2011 RP Mammary Gland MCF7 MCF7 N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Hafner M. et al. 2010 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN PAR-CLIP POSITIVE DIRECT TarBase 6.0
PTEN hsa-miR-301a-3p low: 5 high: 1 2 3 2 0.904
Low-throughput experiments (5 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Wei Shi et al. 2011 WB qP Mammary Gland MDAMB231 N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Western Blot POSITIVE INDIRECT TarBase 7.0
UNKNOWN qPCR POSITIVE INDIRECT TarBase 7.0
Wei Shi et al. 2011 qP Mammary Gland MCF7 N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN qPCR POSITIVE INDIRECT TarBase 7.0
Wei Shi et al. 2011 RP Mammary Gland MDAMB231 MDAMB231 N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
Wei Shi et al. 2011 RP Mammary Gland MCF7 MCF7 N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Kishore S et al. 2011 IP Kidney HEK293 N/A mild MNase digestion
Location Method Result Regulation Validation Type Source
chr10:87967706-87967732 PAR-CLIP POSITIVE DIRECT TarBase 7.0
BBC3 hsa-miR-301a-3p low: 5 high: 0 1 2 1 -
Low-throughput experiments (5 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Wei Shi et al. 2011 WB qP Mammary Gland MDAMB231 N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Western Blot POSITIVE INDIRECT TarBase 7.0
UNKNOWN qPCR POSITIVE INDIRECT TarBase 7.0
Wei Shi et al. 2011 qP Mammary Gland MCF7 N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN qPCR POSITIVE INDIRECT TarBase 7.0
Wei Shi et al. 2011 RP Mammary Gland MDAMB231 MDAMB231 N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
Wei Shi et al. 2011 RP Mammary Gland MCF7 MCF7 N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
COL2A1 hsa-miR-301a-3p low: 4 high: 0 1 2 1 0.609
Low-throughput experiments (4 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Wei Shi et al. 2011 qP Mammary Gland MDAMB231 N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN qPCR POSITIVE INDIRECT TarBase 7.0
Wei Shi et al. 2011 qP Mammary Gland MCF7 N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN qPCR POSITIVE INDIRECT TarBase 7.0
Wei Shi et al. 2011 RP Mammary Gland MDAMB231 MDAMB231 N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
Wei Shi et al. 2011 RP Mammary Gland MCF7 MCF7 N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
ITGB8 hsa-miR-301a-3p low: 2 high: 5 5 6 5 0.651
Low-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Wei Shi et al. 2011 qP Mammary Gland MDAMB231 N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN qPCR POSITIVE INDIRECT TarBase 7.0
Wei Shi et al. 2011 qP Mammary Gland MCF7 N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN qPCR POSITIVE INDIRECT TarBase 7.0
High-throughput experiments (5 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Xue Y et al. 2013 IP Cervix HELA N/A Hela cells were treated with control shRNA.
Location Method Result Regulation Validation Type Source
chr7:20413072-20413094 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Skalsky Rebecca L. et al. 2012 IP N/A LCL35 N/A N/A
Location Method Result Regulation Validation Type Source
chr7:20410379-20410397 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Kishore S et al. 2011 IP Kidney HEK293 N/A mild MNase digestion
Location Method Result Regulation Validation Type Source
chr7:20412560-20412573 PAR-CLIP POSITIVE DIRECT TarBase 7.0
chr7:20410379-20410397 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Balakrishnan I et al. 2014 IP Bone Marrow HS5 N/A N/A
Location Method Result Regulation Validation Type Source
chr7:20410272-20410292 HITS-CLIP POSITIVE DIRECT TarBase 7.0
SERPINE1 hsa-miR-301a-3p low: 2 high: 0 1 2 2 -
Low-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Nitin Patel et al. 2011 WB Intestine HPMVEC N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Western Blot POSITIVE INDIRECT TarBase 7.0
Nitin Patel et al. 2011 RP Intestine HPMVEC HPMVEC N/A
Location Method Result Regulation Validation Type Source
chr7:101137864-101137886 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
Other Databases
Publication Methods Tissue Cell line Tested cell line Exp. condition
Nitin Patel et al. 2011 O N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Other UNKNOWN UNKNOWN miRTarBase
MMP13 hsa-miR-301a-3p low: 2 high: 0 1 2 1 0.605
Low-throughput experiments (0 positive, 2 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Wei Shi et al. 2011 qP Mammary Gland MDAMB231 N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN qPCR NEGATIVE INDIRECT TarBase 7.0
Wei Shi et al. 2011 qP Mammary Gland MCF7 N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN qPCR NEGATIVE INDIRECT TarBase 7.0
IL18 hsa-miR-301a-3p low: 2 high: 0 1 2 1 -
Low-throughput experiments (1 positive, 1 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Wei Shi et al. 2011 qP Mammary Gland MDAMB231 N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN qPCR NEGATIVE INDIRECT TarBase 7.0
Wei Shi et al. 2011 qP Mammary Gland MCF7 N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN qPCR POSITIVE INDIRECT TarBase 7.0
PXDN hsa-miR-301a-3p low: 1 high: 1 2 2 2 0.742
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Nitin Patel et al. 2011 qP Intestine HPMVEC N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN qPCR POSITIVE INDIRECT TarBase 7.0
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Pillai MM et al. 2014 IP Mammary Gland BT474 N/A N/A
Location Method Result Regulation Validation Type Source
chr2:1648679-1648698 HITS-CLIP POSITIVE DIRECT TarBase 7.0
DNMT1 hsa-miR-301a-3p low: 1 high: 0 1 1 1 -
Low-throughput experiments (0 positive, 1 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Chiara Braconi et al. 2010 RP Liver MZCHA1 MZCHA1 N/A
Location Method Result Regulation Validation Type Source
chr19:10133365-10133654 Luciferase Reporter Assay NEGATIVE DIRECT TarBase 8.0
CALM2 hsa-miR-301a-3p low: 0 high: 8 5 6 4 -
High-throughput experiments (8 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr2:47160361-47160385 Chimeric fragments POSITIVE DIRECT TarBase 8.0
Grosswendt S et al. 2014 IP Pleura B lymphocyte N/A N/A
Location Method Result Regulation Validation Type Source
chr2:47160361-47160385 Chimeric fragments POSITIVE DIRECT TarBase 8.0
Inna Lipchina et al. 2011 IP Embryo ESC N/A T1 RNase treatment
Location Method Result Regulation Validation Type Source
chr2:47160366-47160391 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Kishore S et al. 2011 IP Kidney HEK293 N/A mild MNase digestion
Location Method Result Regulation Validation Type Source
chr2:47160366-47160391 PAR-CLIP POSITIVE DIRECT TarBase 7.0
chr2:47160366-47160391 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Eva Gottwein et al. 2011 IP Pleura BC1 N/A N/A
Location Method Result Regulation Validation Type Source
chr2:47160366-47160391 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Balakrishnan I et al. 2014 IP Bone Marrow HS5 N/A N/A
Location Method Result Regulation Validation Type Source
chr2:47160366-47160391 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Balakrishnan I et al. 2014 IP Bone Marrow HS27A N/A N/A
Location Method Result Regulation Validation Type Source
chr2:47160366-47160391 HITS-CLIP POSITIVE DIRECT TarBase 7.0
HPRT1 hsa-miR-301a-3p low: 0 high: 8 4 4 2 0.849
High-throughput experiments (8 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chrX:134500242-134500265 Chimeric fragments POSITIVE DIRECT TarBase 8.0
Pillai MM et al. 2014 IP Mammary Gland MCF7 N/A N/A
Location Method Result Regulation Validation Type Source
chrX:134500246-134500262 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Pillai MM et al. 2014 IP Mammary Gland BT474 N/A N/A
Location Method Result Regulation Validation Type Source
chrX:134500246-134500262 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Kishore S et al. 2011 IP Kidney HEK293 N/A mild MNase digestion
Location Method Result Regulation Validation Type Source
chrX:134500246-134500262 PAR-CLIP POSITIVE DIRECT TarBase 7.0
chrX:134500246-134500262 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chrX:134500246-134500262 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chrX:134500246-134500262 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chrX:134500246-134500262 HITS-CLIP POSITIVE DIRECT TarBase 7.0
SLAIN1 hsa-miR-301a-3p low: 0 high: 5 3 3 2 -
High-throughput experiments (5 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr13:77763368-77763394 Chimeric fragments POSITIVE DIRECT TarBase 8.0
Skalsky Rebecca L. et al. 2012 IP N/A LCLBACD3 N/A N/A
Location Method Result Regulation Validation Type Source
chr13:77764113-77764136 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Skalsky Rebecca L. et al. 2012 IP N/A LCLBACD1 N/A N/A
Location Method Result Regulation Validation Type Source
chr13:77764113-77764136 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Kishore S et al. 2011 IP Kidney HEK293 N/A mild MNase digestion
Location Method Result Regulation Validation Type Source
chr13:77764113-77764136 PAR-CLIP POSITIVE DIRECT TarBase 7.0
chr13:77763371-77763388 PAR-CLIP POSITIVE DIRECT TarBase 7.0
MAML1 hsa-miR-301a-3p low: 0 high: 4 4 4 4 0.558
High-throughput experiments (4 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr5:179776953-179776980 Chimeric fragments POSITIVE DIRECT TarBase 8.0
Pillai MM et al. 2014 IP Mammary Gland BT474 N/A N/A
Location Method Result Regulation Validation Type Source
chr5:179775985-179776005 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Haecker Irina et al. 2012 IP Bone Marrow BCBL1 N/A N/A
Location Method Result Regulation Validation Type Source
chr5:179775985-179776005 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Eva Gottwein et al. 2011 IP Pleura BC1 N/A N/A
Location Method Result Regulation Validation Type Source
chr5:179775985-179776005 PAR-CLIP POSITIVE DIRECT TarBase 7.0
HNRNPUL1 hsa-miR-301a-3p low: 0 high: 3 3 1 1 0.503
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr19:41307575-41307596 Chimeric fragments POSITIVE DIRECT TarBase 8.0
Sebastian Memczak et al. 2013 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr19:41307574-41307595 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Kishore S et al. 2011 IP Kidney HEK293 N/A mild MNase digestion
Location Method Result Regulation Validation Type Source
chr19:41307574-41307595 PAR-CLIP POSITIVE DIRECT TarBase 7.0
SASH1 hsa-miR-301a-3p low: 0 high: 2 2 1 1 0.882
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr6:148551742-148551770 Chimeric fragments POSITIVE DIRECT TarBase 8.0
Sebastian Memczak et al. 2013 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr6:148551753-148551769 PAR-CLIP POSITIVE DIRECT TarBase 7.0
MBD2 hsa-miR-301a-3p low: 0 high: 2 2 1 1 -
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr18:54151667-54151689 Chimeric fragments POSITIVE DIRECT TarBase 8.0
Kishore S et al. 2011 IP Kidney HEK293 N/A mild MNase digestion
Location Method Result Regulation Validation Type Source
chr18:54151669-54151695 PAR-CLIP POSITIVE DIRECT TarBase 7.0
LONRF1 hsa-miR-301a-3p low: 0 high: 2 2 1 1 -
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr8:12729296-12729318 Chimeric fragments POSITIVE DIRECT TarBase 8.0
Kishore S et al. 2011 IP Kidney HEK293 N/A mild MNase digestion
Location Method Result Regulation Validation Type Source
chr8:12722851-12722870 PAR-CLIP POSITIVE DIRECT TarBase 7.0
PRNP hsa-miR-301a-3p low: 0 high: 2 2 1 1 0.879
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr20:4700103-4700125 Chimeric fragments POSITIVE DIRECT TarBase 8.0
Hafner M. et al. 2010 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN PAR-CLIP POSITIVE DIRECT TarBase 6.0