Please cite:
Dimitra Karagkouni, Maria D. Paraskevopoulou, Serafeim Chatzopoulos, Ioannis S. Vlachos, Spyros Tastsoglou, Ilias Kanellos, Dimitris Papadimitriou, Ioannis Kavakiotis, Sofia Maniou, Giorgos Skoufos, Thanasis Vergoulis, Theodore Dalamagas, Artemis G. Hatzigeorgiou; DIANA-TarBase v8: a decade-long collection of experimentally supported miRNA–gene interactions, Nucleic Acids Research, gkx1141, https://doi.org/10.1093/nar/gkx1141
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hsa-miR-30b-5p


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Interactions: 1973, Experiments: (low: , high: , unknown: ) Cell lines: , Tissues: , Publications:
Gene name miRNA name Experiments
throughput
Publications Cell lines Tissues Pred. Score
BCL9 hsa-miR-30b-5p low: 2 high: 1 2 2 3 0.891
Low-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Zhao JJ. et al. 2014 RP Bone Marrow N/A HEK293T N/A
Location Method Result Regulation Validation Type Source
chr1:147625430-147625452 Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
chr1:147625273-147625295 Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Pillai MM et al. 2014 IP Mammary Gland BT474 N/A N/A
Location Method Result Regulation Validation Type Source
chr1:147625269-147625295 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Other Databases
Publication Methods Tissue Cell line Tested cell line Exp. condition
Zhao JJ. et al. 2014 O N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Other UNKNOWN UNKNOWN miRTarBase
SNAI1 hsa-miR-30b-5p low: 2 high: 0 1 2 2 -
Low-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Regalla Kumarswamy et al. 2012 RP Lung NSCLC CALU1 N/A
Location Method Result Regulation Validation Type Source
chr20:49988746-49988769 Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
Regalla Kumarswamy et al. 2012 RP Lung NSCLC H1299 N/A
Location Method Result Regulation Validation Type Source
chr20:49988746-49988769 Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
Other Databases
Publication Methods Tissue Cell line Tested cell line Exp. condition
Regalla Kumarswamy et al. 2012 O N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Other UNKNOWN UNKNOWN miRTarBase
NOTCH1 hsa-miR-30b-5p low: 1 high: 1 2 2 2 0.740
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Wu J. et al. 2014 RP Kidney Podocytes Podocytes N/A
Location Method Result Regulation Validation Type Source
chr9:136,494,444-136,496,070 Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Xue Y et al. 2013 IP Cervix HELA N/A Hela cells were treated with control shRNA.
Location Method Result Regulation Validation Type Source
chr9:136494545-136494563 HITS-CLIP POSITIVE DIRECT TarBase 7.0
NIN hsa-miR-30b-5p low: 0 high: 5 2 2 2 -
High-throughput experiments (5 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr14:50722314-50722338 Chimeric fragments POSITIVE DIRECT TarBase 8.0
Boudreau RL et al. 2014 IP Brain N/A N/A N/A
Location Method Result Regulation Validation Type Source
chr14:50721002-50721009 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr14:50721002-50721009 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr14:50721002-50721009 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr14:50721002-50721009 HITS-CLIP POSITIVE DIRECT TarBase 8.0
SNRNP200 hsa-miR-30b-5p low: 0 high: 1 1 2 2 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Helwak Aleksandra et al. 2013 IP Kidney FLPIN_TREX_293 N/A N/A
Location Method Result Regulation Validation Type Source
chr2:96286802-96286857 CLASH POSITIVE DIRECT TarBase 7.0
Other Databases
Publication Methods Tissue Cell line Tested cell line Exp. condition
Helwak Aleksandra et al. 2013 O N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Other UNKNOWN UNKNOWN miRTarBase
POU4F1 hsa-miR-30b-5p low: 0 high: 1 1 2 2 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Helwak Aleksandra et al. 2013 IP Kidney FLPIN_TREX_293 N/A N/A
Location Method Result Regulation Validation Type Source
chr13:78601175-78601217 CLASH POSITIVE DIRECT TarBase 7.0
Other Databases
Publication Methods Tissue Cell line Tested cell line Exp. condition
Helwak Aleksandra et al. 2013 O N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Other UNKNOWN UNKNOWN miRTarBase
ZBTB41 hsa-miR-30b-5p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr1:197154123-197154147 Chimeric fragments POSITIVE DIRECT TarBase 8.0
MT-ND5 hsa-miR-30b-5p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Moore M et al. 2015 IP Liver HUH7.5 N/A N/A
Location Method Result Regulation Validation Type Source
chrMT:12513-12588 CLEAR-CLIP POSITIVE DIRECT TarBase 8.0
TNRC6A hsa-miR-30b-5p low: 0 high: 30 8 8 6 -
High-throughput experiments (30 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Boudreau RL et al. 2014 IP Brain N/A N/A N/A
Location Method Result Regulation Validation Type Source
chr16:24824243-24824268 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr16:24825340-24825366 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr16:24790534-24790556 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr16:24824243-24824268 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr16:24825340-24825366 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr16:24824243-24824268 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr16:24825340-24825366 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr16:24790534-24790556 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr16:24824243-24824268 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr16:24825340-24825366 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr16:24825340-24825366 HITS-CLIP POSITIVE DIRECT TarBase 8.0
Skalsky Rebecca L. et al. 2012 IP N/A EF3DAGO2 N/A N/A
Location Method Result Regulation Validation Type Source
chr16:24790029-24790035 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Pillai MM et al. 2014 IP Mammary Gland BT474 N/A N/A
Location Method Result Regulation Validation Type Source
chr16:24825340-24825366 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr16:24824243-24824268 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr16:24790534-24790556 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr16:24790029-24790035 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Kishore S et al. 2011 IP Kidney HEK293 N/A mild MNase digestion
Location Method Result Regulation Validation Type Source
chr16:24825340-24825366 PAR-CLIP POSITIVE DIRECT TarBase 7.0
chr16:24824540-24824560 PAR-CLIP POSITIVE DIRECT TarBase 7.0
chr16:24824540-24824560 PAR-CLIP POSITIVE DIRECT TarBase 7.0
chr16:24824243-24824268 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chr16:24824540-24824560 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr16:24825340-24825366 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr16:24824540-24824560 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr16:24824540-24824560 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr16:24825340-24825366 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr16:24824540-24824560 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr16:24824243-24824268 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Kameswaran V et al. 2014 IP Pancreas BETA Cells N/A N/A
Location Method Result Regulation Validation Type Source
chr16:24824243-24824268 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Haecker Irina et al. 2012 IP Bone Marrow BCBL1 N/A N/A
Location Method Result Regulation Validation Type Source
chr16:24825340-24825366 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Balakrishnan I et al. 2014 IP Bone Marrow HS5 N/A N/A
Location Method Result Regulation Validation Type Source
chr16:24824243-24824268 HITS-CLIP POSITIVE DIRECT TarBase 7.0
TAOK1 hsa-miR-30b-5p low: 0 high: 20 5 5 5 0.996
High-throughput experiments (20 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Boudreau RL et al. 2014 IP Brain N/A N/A N/A
Location Method Result Regulation Validation Type Source
chr17:29543162-29543183 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr17:29549003-29549020 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr17:29546124-29546144 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr17:29546124-29546144 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr17:29544160-29544184 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr17:29549003-29549020 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr17:29549003-29549020 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr17:29544160-29544184 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr17:29543162-29543183 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr17:29549003-29549020 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr17:29549003-29549020 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr17:29549003-29549020 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr17:29544160-29544184 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr17:29549003-29549020 HITS-CLIP POSITIVE DIRECT TarBase 8.0
Skalsky Rebecca L. et al. 2012 IP N/A LCLBACD3 N/A N/A
Location Method Result Regulation Validation Type Source
chr17:29544160-29544184 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Pillai MM et al. 2014 IP Mammary Gland BT474 N/A N/A
Location Method Result Regulation Validation Type Source
chr17:29549003-29549020 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr17:29549003-29549020 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr17:29549003-29549020 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr17:29544160-29544184 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Kameswaran V et al. 2014 IP Pancreas BETA Cells N/A N/A
Location Method Result Regulation Validation Type Source
chr17:29549003-29549020 HITS-CLIP POSITIVE DIRECT TarBase 7.0
BRWD1 hsa-miR-30b-5p low: 0 high: 19 5 9 5 0.999
High-throughput experiments (19 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Boudreau RL et al. 2014 IP Brain N/A N/A N/A
Location Method Result Regulation Validation Type Source
chr21:39194943-39194963 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr21:39193823-39193840 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr21:39193823-39193840 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr21:39195834-39195843 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr21:39193823-39193840 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr21:39195834-39195843 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr21:39193823-39193840 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr21:39195834-39195843 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr21:39194943-39194963 HITS-CLIP POSITIVE DIRECT TarBase 8.0
Skalsky Rebecca L. et al. 2012 IP N/A LCLBAC N/A N/A
Location Method Result Regulation Validation Type Source
chr21:39195834-39195843 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Skalsky Rebecca L. et al. 2012 IP N/A LCLBACD3 N/A N/A
Location Method Result Regulation Validation Type Source
chr21:39195834-39195843 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Skalsky Rebecca L. et al. 2012 IP N/A LCL35 N/A N/A
Location Method Result Regulation Validation Type Source
chr21:39195834-39195843 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Skalsky Rebecca L. et al. 2012 IP N/A EF3DAGO2 N/A N/A
Location Method Result Regulation Validation Type Source
chr21:39195834-39195843 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Kishore S et al. 2011 IP Kidney HEK293 N/A mild MNase digestion
Location Method Result Regulation Validation Type Source
chr21:39195834-39195843 PAR-CLIP POSITIVE DIRECT TarBase 7.0
chr21:39194943-39194963 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Haecker Irina et al. 2012 IP Bone Marrow BCBL1 N/A N/A
Location Method Result Regulation Validation Type Source
chr21:39195834-39195843 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Eva Gottwein et al. 2011 IP Pleura BC3 N/A N/A
Location Method Result Regulation Validation Type Source
chr21:39195834-39195843 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Eva Gottwein et al. 2011 IP Pleura BC1 N/A N/A
Location Method Result Regulation Validation Type Source
chr21:39195834-39195843 PAR-CLIP POSITIVE DIRECT TarBase 7.0
chr21:39194943-39194963 PAR-CLIP POSITIVE DIRECT TarBase 7.0
GIGYF1 hsa-miR-30b-5p low: 0 high: 19 5 4 3 -
High-throughput experiments (19 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Boudreau RL et al. 2014 IP Brain N/A N/A N/A
Location Method Result Regulation Validation Type Source
chr7:100679754-100679776 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr7:100679754-100679776 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr7:100679754-100679776 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr7:100679754-100679776 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr7:100679754-100679776 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr7:100679754-100679776 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr7:100679754-100679776 HITS-CLIP POSITIVE DIRECT TarBase 8.0
Kishore S et al. 2011 IP Kidney HEK293 N/A mild MNase digestion
Location Method Result Regulation Validation Type Source
chr7:100679754-100679776 PAR-CLIP POSITIVE DIRECT TarBase 7.0
chr7:100679754-100679776 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr7:100679754-100679776 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chr7:100679754-100679776 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr7:100679754-100679776 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr7:100679754-100679776 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr7:100679754-100679776 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr7:100679754-100679776 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr7:100679754-100679776 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr7:100679754-100679776 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Kameswaran V et al. 2014 IP Pancreas BETA Cells N/A N/A
Location Method Result Regulation Validation Type Source
chr7:100679754-100679776 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Hafner M. et al. 2010 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN PAR-CLIP POSITIVE DIRECT TarBase 6.0
E2F7 hsa-miR-30b-5p low: 0 high: 16 7 9 4 -
High-throughput experiments (16 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Skalsky Rebecca L. et al. 2012 IP N/A LCLBAC N/A N/A
Location Method Result Regulation Validation Type Source
chr12:77021553-77021560 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Skalsky Rebecca L. et al. 2012 IP N/A LCLBACD3 N/A N/A
Location Method Result Regulation Validation Type Source
chr12:77021553-77021560 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Skalsky Rebecca L. et al. 2012 IP N/A LCLBACD1 N/A N/A
Location Method Result Regulation Validation Type Source
chr12:77021553-77021560 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Skalsky Rebecca L. et al. 2012 IP N/A LCL35 N/A N/A
Location Method Result Regulation Validation Type Source
chr12:77022347-77022354 PAR-CLIP POSITIVE DIRECT TarBase 7.0
chr12:77021553-77021560 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Sebastian Memczak et al. 2013 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr12:77021553-77021560 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Inna Lipchina et al. 2011 IP Embryo ESC N/A T1 RNase treatment
Location Method Result Regulation Validation Type Source
chr12:77021553-77021560 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Kishore S et al. 2011 IP Kidney HEK293 N/A mild MNase digestion
Location Method Result Regulation Validation Type Source
chr12:77022347-77022354 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr12:77055867-77055893 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr12:77055867-77055893 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr12:77055867-77055893 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Hafner M. et al. 2010 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN PAR-CLIP POSITIVE DIRECT TarBase 6.0
Eva Gottwein et al. 2011 IP Pleura BC3 N/A N/A
Location Method Result Regulation Validation Type Source
chr12:77022347-77022354 PAR-CLIP POSITIVE DIRECT TarBase 7.0
chr12:77021553-77021560 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Eva Gottwein et al. 2011 IP Pleura BC1 N/A N/A
Location Method Result Regulation Validation Type Source
chr12:77022347-77022354 PAR-CLIP POSITIVE DIRECT TarBase 7.0
chr12:77021553-77021560 PAR-CLIP POSITIVE DIRECT TarBase 7.0
ZBTB18 hsa-miR-30b-5p low: 0 high: 16 6 6 5 0.928
High-throughput experiments (16 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Boudreau RL et al. 2014 IP Brain N/A N/A N/A
Location Method Result Regulation Validation Type Source
chr1:244056420-244056441 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr1:244056192-244056207 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr1:244056420-244056441 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr1:244056192-244056207 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr1:244056420-244056441 HITS-CLIP POSITIVE DIRECT TarBase 8.0
Skalsky Rebecca L. et al. 2012 IP N/A LCLBAC N/A N/A
Location Method Result Regulation Validation Type Source
chr1:244056420-244056441 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Pillai MM et al. 2014 IP Mammary Gland BT474 N/A N/A
Location Method Result Regulation Validation Type Source
chr1:244056420-244056441 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Kishore S et al. 2011 IP Kidney HEK293 N/A mild MNase digestion
Location Method Result Regulation Validation Type Source
chr1:244056420-244056441 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr1:244056420-244056441 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chr1:244056420-244056441 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr1:244056420-244056441 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:emetine
Location Method Result Regulation Validation Type Source
chr1:244056420-244056441 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr1:244056420-244056441 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr1:244056420-244056441 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr1:244056420-244056441 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Eva Gottwein et al. 2011 IP Pleura BC1 N/A N/A
Location Method Result Regulation Validation Type Source
chr1:244056420-244056441 PAR-CLIP POSITIVE DIRECT TarBase 7.0
RHOB hsa-miR-30b-5p low: 0 high: 16 8 8 6 0.999
High-throughput experiments (16 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Boudreau RL et al. 2014 IP Brain N/A N/A N/A
Location Method Result Regulation Validation Type Source
chr2:20449350-20449371 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr2:20449350-20449371 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr2:20449350-20449371 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr2:20449350-20449371 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr2:20449350-20449371 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr2:20449350-20449371 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr2:20449350-20449371 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr2:20449350-20449371 HITS-CLIP POSITIVE DIRECT TarBase 8.0
Xue Y et al. 2013 IP Cervix HELA N/A Hela cells were treated with control shRNA.
Location Method Result Regulation Validation Type Source
chr2:20449350-20449371 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Pillai MM et al. 2014 IP Mammary Gland BT474 N/A N/A
Location Method Result Regulation Validation Type Source
chr2:20449350-20449371 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Kishore S et al. 2011 IP Kidney HEK293 N/A mild MNase digestion
Location Method Result Regulation Validation Type Source
chr2:20449350-20449371 PAR-CLIP POSITIVE DIRECT TarBase 7.0
chr2:20449350-20449371 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:emetine
Location Method Result Regulation Validation Type Source
chr2:20449350-20449371 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Kameswaran V et al. 2014 IP Pancreas BETA Cells N/A N/A
Location Method Result Regulation Validation Type Source
chr2:20449350-20449371 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Haecker Irina et al. 2012 IP Bone Marrow BCBL1 N/A N/A
Location Method Result Regulation Validation Type Source
chr2:20449350-20449371 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Balakrishnan I et al. 2014 IP Bone Marrow HS5 N/A N/A
Location Method Result Regulation Validation Type Source
chr2:20449350-20449371 HITS-CLIP POSITIVE DIRECT TarBase 7.0