Please cite:
Dimitra Karagkouni, Maria D. Paraskevopoulou, Serafeim Chatzopoulos, Ioannis S. Vlachos, Spyros Tastsoglou, Ilias Kanellos, Dimitris Papadimitriou, Ioannis Kavakiotis, Sofia Maniou, Giorgos Skoufos, Thanasis Vergoulis, Theodore Dalamagas, Artemis G. Hatzigeorgiou; DIANA-TarBase v8: a decade-long collection of experimentally supported miRNA–gene interactions, Nucleic Acids Research, gkx1141, https://doi.org/10.1093/nar/gkx1141
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hsa-miR-3127-3p


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Interactions: 303, Experiments: (low: , high: , unknown: ) Cell lines: , Tissues: , Publications:
Gene name miRNA name Experiments
throughput
Publications Cell lines Tissues Pred. Score
NUDT1 hsa-miR-3127-3p low: 0 high: 6 1 1 1 -
High-throughput experiments (6 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr7:2244675-2244702 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chr7:2244675-2244702 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr7:2244675-2244702 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr7:2244675-2244702 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr7:2244675-2244702 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr7:2244675-2244702 HITS-CLIP POSITIVE DIRECT TarBase 7.0
OAZ1 hsa-miR-3127-3p low: 0 high: 6 1 1 1 -
High-throughput experiments (6 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr19:2269640-2269663 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr19:2269640-2269663 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr19:2269640-2269663 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr19:2269640-2269663 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr19:2269640-2269663 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr19:2269640-2269663 HITS-CLIP POSITIVE DIRECT TarBase 7.0
B4GALNT4 hsa-miR-3127-3p low: 0 high: 6 1 1 1 -
High-throughput experiments (6 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr11:377052-377072 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chr11:377052-377072 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr11:377052-377072 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr11:377052-377072 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr11:377052-377072 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr11:377052-377072 HITS-CLIP POSITIVE DIRECT TarBase 7.0
RRAGD hsa-miR-3127-3p low: 0 high: 5 1 1 1 -
High-throughput experiments (5 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr6:89367969-89367993 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr6:89367969-89367993 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr6:89367969-89367993 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr6:89367969-89367993 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr6:89367969-89367993 HITS-CLIP POSITIVE DIRECT TarBase 7.0
MAZ hsa-miR-3127-3p low: 0 high: 5 1 1 1 0.756
High-throughput experiments (5 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr16:29810839-29810863 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr16:29810731-29810752 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr16:29810839-29810863 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr16:29810731-29810752 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr16:29810685-29810707 HITS-CLIP POSITIVE DIRECT TarBase 7.0
MED13 hsa-miR-3127-3p low: 0 high: 4 1 1 1 0.793
High-throughput experiments (4 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr17:61942832-61942856 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chr17:61942832-61942856 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr17:61942832-61942856 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr17:61942832-61942856 HITS-CLIP POSITIVE DIRECT TarBase 7.0
ITGA6 hsa-miR-3127-3p low: 0 high: 4 1 1 1 -
High-throughput experiments (4 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr2:172504732-172504755 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr2:172504732-172504755 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr2:172504732-172504755 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr2:172504732-172504755 HITS-CLIP POSITIVE DIRECT TarBase 7.0
HOXB4 hsa-miR-3127-3p low: 0 high: 4 1 1 1 -
High-throughput experiments (4 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr17:48579867-48579891 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chr17:48579867-48579891 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr17:48579867-48579891 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr17:48579867-48579891 HITS-CLIP POSITIVE DIRECT TarBase 7.0
DDX3X hsa-miR-3127-3p low: 0 high: 4 1 1 1 0.748
High-throughput experiments (4 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chrX:41349381-41349402 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chrX:41349381-41349402 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chrX:41349381-41349402 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chrX:41349381-41349402 HITS-CLIP POSITIVE DIRECT TarBase 7.0
C11orf84 hsa-miR-3127-3p low: 0 high: 4 1 1 1 -
High-throughput experiments (4 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr11:63813726-63813754 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr11:63813726-63813754 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr11:63813726-63813754 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr11:63813726-63813754 HITS-CLIP POSITIVE DIRECT TarBase 7.0
MED28 hsa-miR-3127-3p low: 0 high: 4 1 1 1 -
High-throughput experiments (4 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr4:17624274-17624288 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr4:17624274-17624288 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr4:17624274-17624288 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr4:17624274-17624288 HITS-CLIP POSITIVE DIRECT TarBase 7.0
CDKN1A hsa-miR-3127-3p low: 0 high: 3 1 1 1 -
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr6:36686260-36686281 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr6:36686260-36686281 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr6:36686260-36686281 HITS-CLIP POSITIVE DIRECT TarBase 7.0
BRD2 hsa-miR-3127-3p low: 0 high: 3 1 1 1 -
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:emetine
Location Method Result Regulation Validation Type Source
chr6:32981133-32981155 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr6:32981133-32981155 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr6:32972815-32972841 HITS-CLIP POSITIVE DIRECT TarBase 7.0
ZC3H7B hsa-miR-3127-3p low: 0 high: 3 1 1 1 -
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr22:41359561-41359589 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr22:41359561-41359589 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr22:41359561-41359589 HITS-CLIP POSITIVE DIRECT TarBase 7.0
PABPN1 hsa-miR-3127-3p low: 0 high: 3 1 1 1 0.599
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr14:23325455-23325483 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr14:23325455-23325483 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr14:23325411-23325431 HITS-CLIP POSITIVE DIRECT TarBase 7.0
HOXB6 hsa-miR-3127-3p low: 0 high: 3 1 1 1 0.691
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr17:48595919-48595941 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr17:48595919-48595941 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr17:48595919-48595941 HITS-CLIP POSITIVE DIRECT TarBase 7.0
NR1H2 hsa-miR-3127-3p low: 0 high: 3 1 1 1 0.653
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr19:50382870-50382898 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr19:50382870-50382898 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr19:50382870-50382898 HITS-CLIP POSITIVE DIRECT TarBase 7.0
SLC9A5 hsa-miR-3127-3p low: 0 high: 3 1 1 1 -
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr16:67266147-67266171 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr16:67266147-67266171 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr16:67266147-67266171 HITS-CLIP POSITIVE DIRECT TarBase 7.0
HNRNPU hsa-miR-3127-3p low: 0 high: 3 1 1 1 -
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr1:244863883-244863906 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr1:244863883-244863906 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr1:244858035-244858057 HITS-CLIP POSITIVE DIRECT TarBase 7.0
EIF4A1 hsa-miR-3127-3p low: 0 high: 3 1 1 1 -
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr17:7573821-7573849 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr17:7573821-7573849 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr17:7573821-7573849 HITS-CLIP POSITIVE DIRECT TarBase 7.0