Please cite:
Dimitra Karagkouni, Maria D. Paraskevopoulou, Serafeim Chatzopoulos, Ioannis S. Vlachos, Spyros Tastsoglou, Ilias Kanellos, Dimitris Papadimitriou, Ioannis Kavakiotis, Sofia Maniou, Giorgos Skoufos, Thanasis Vergoulis, Theodore Dalamagas, Artemis G. Hatzigeorgiou; DIANA-TarBase v8: a decade-long collection of experimentally supported miRNA–gene interactions, Nucleic Acids Research, gkx1141, https://doi.org/10.1093/nar/gkx1141
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hsa-miR-3127-5p


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Interactions: 251, Experiments: (low: , high: , unknown: ) Cell lines: , Tissues: , Publications:
Gene name miRNA name Experiments
throughput
Publications Cell lines Tissues Pred. Score
C17orf97 hsa-miR-3127-5p low: 0 high: 11 1 1 1 0.500
High-throughput experiments (11 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr17:414495-414514 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr17:414495-414514 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr17:414495-414514 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chr17:414495-414514 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr17:414495-414514 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr17:414495-414514 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr17:414495-414514 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr17:414495-414514 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr17:414495-414514 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr17:414495-414514 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr17:414495-414514 HITS-CLIP POSITIVE DIRECT TarBase 7.0
XPO1 hsa-miR-3127-5p low: 0 high: 6 1 1 1 -
High-throughput experiments (6 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr2:61537735-61537746 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr2:61537735-61537746 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chr2:61537735-61537746 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:emetine
Location Method Result Regulation Validation Type Source
chr2:61537735-61537746 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr2:61537735-61537746 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr2:61537735-61537746 HITS-CLIP POSITIVE DIRECT TarBase 7.0
ZNF768 hsa-miR-3127-5p low: 0 high: 5 1 1 1 0.689
High-throughput experiments (5 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr16:30525844-30525869 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr16:30525823-30525850 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr16:30525802-30525829 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr16:30525844-30525869 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr16:30525310-30525338 HITS-CLIP POSITIVE DIRECT TarBase 7.0
SCAI hsa-miR-3127-5p low: 0 high: 4 1 1 1 -
High-throughput experiments (4 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr9:124948162-124948189 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr9:124948162-124948189 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr9:124948162-124948189 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr9:124948162-124948189 HITS-CLIP POSITIVE DIRECT TarBase 7.0
CDK16 hsa-miR-3127-5p low: 0 high: 3 1 1 1 0.561
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chrX:47229421-47229441 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chrX:47229371-47229392 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chrX:47229371-47229392 HITS-CLIP POSITIVE DIRECT TarBase 7.0
BTG2 hsa-miR-3127-5p low: 0 high: 3 1 1 1 0.462
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr1:203307987-203308004 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:emetine
Location Method Result Regulation Validation Type Source
chr1:203307987-203308004 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr1:203307987-203308004 HITS-CLIP POSITIVE DIRECT TarBase 7.0
LAPTM4A hsa-miR-3127-5p low: 0 high: 3 1 1 1 -
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr2:20032847-20032874 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr2:20032847-20032874 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr2:20032847-20032874 HITS-CLIP POSITIVE DIRECT TarBase 7.0
DICER1 hsa-miR-3127-5p low: 0 high: 3 1 1 1 -
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr14:95103385-95103407 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr14:95104007-95104034 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr14:95103385-95103407 HITS-CLIP POSITIVE DIRECT TarBase 7.0
RPL36 hsa-miR-3127-5p low: 0 high: 3 1 1 1 -
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chr19:5691623-5691645 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr19:5691623-5691645 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:emetine
Location Method Result Regulation Validation Type Source
chr19:5691623-5691645 HITS-CLIP POSITIVE DIRECT TarBase 7.0
ZNF711 hsa-miR-3127-5p low: 0 high: 3 1 1 1 -
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chrX:85255380-85255404 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chrX:85267328-85267350 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chrX:85255380-85255404 HITS-CLIP POSITIVE DIRECT TarBase 7.0
C19orf48 hsa-miR-3127-5p low: 0 high: 3 1 1 1 -
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chr19:50798718-50798741 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr19:50802456-50802478 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr19:50798718-50798741 HITS-CLIP POSITIVE DIRECT TarBase 7.0
ZNF512B hsa-miR-3127-5p low: 0 high: 3 1 1 1 -
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr20:63958702-63958721 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr20:63959734-63959758 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr20:63958702-63958721 HITS-CLIP POSITIVE DIRECT TarBase 7.0
TNC hsa-miR-3127-5p low: 0 high: 3 1 1 1 -
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr9:115090665-115090691 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr9:115086154-115086172 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr9:115024004-115024029 HITS-CLIP POSITIVE DIRECT TarBase 7.0
MORF4L2 hsa-miR-3127-5p low: 0 high: 3 1 1 1 -
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chrX:103685202-103685224 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chrX:103685184-103685209 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chrX:103675815-103675839 HITS-CLIP POSITIVE DIRECT TarBase 7.0
GCLC hsa-miR-3127-5p low: 0 high: 2 1 1 1 -
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr6:53498362-53498389 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr6:53498362-53498389 HITS-CLIP POSITIVE DIRECT TarBase 7.0
NUCKS1 hsa-miR-3127-5p low: 0 high: 2 1 1 1 -
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:emetine
Location Method Result Regulation Validation Type Source
chr1:205750129-205750152 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr1:205750129-205750152 HITS-CLIP POSITIVE DIRECT TarBase 7.0
ACTB hsa-miR-3127-5p low: 0 high: 2 1 1 1 -
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chr7:5529193-5529220 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr7:5529193-5529220 HITS-CLIP POSITIVE DIRECT TarBase 7.0
NPDC1 hsa-miR-3127-5p low: 0 high: 2 1 1 1 -
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:emetine
Location Method Result Regulation Validation Type Source
chr9:137043035-137043061 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr9:137043035-137043061 HITS-CLIP POSITIVE DIRECT TarBase 7.0
KDM5C hsa-miR-3127-5p low: 0 high: 2 1 1 1 0.826
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chrX:53192832-53192854 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chrX:53192500-53192520 HITS-CLIP POSITIVE DIRECT TarBase 7.0
LRRC41 hsa-miR-3127-5p low: 0 high: 2 2 2 2 -
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Skalsky Rebecca L. et al. 2012 IP N/A EF3DAGO2 N/A N/A
Location Method Result Regulation Validation Type Source
chr1:46285422-46285449 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr1:46285422-46285449 HITS-CLIP POSITIVE DIRECT TarBase 7.0