Please cite:
Dimitra Karagkouni, Maria D. Paraskevopoulou, Serafeim Chatzopoulos, Ioannis S. Vlachos, Spyros Tastsoglou, Ilias Kanellos, Dimitris Papadimitriou, Ioannis Kavakiotis, Sofia Maniou, Giorgos Skoufos, Thanasis Vergoulis, Theodore Dalamagas, Artemis G. Hatzigeorgiou; DIANA-TarBase v8: a decade-long collection of experimentally supported miRNA–gene interactions, Nucleic Acids Research, gkx1141, https://doi.org/10.1093/nar/gkx1141
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hsa-miR-3157-5p


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Interactions: 336, Experiments: (low: , high: , unknown: ) Cell lines: , Tissues: , Publications:
Gene name miRNA name Experiments
throughput
Publications Cell lines Tissues Pred. Score
LRRC58 hsa-miR-3157-5p low: 0 high: 3 2 2 1 0.672
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr3:120330965-120330987 Chimeric fragments POSITIVE DIRECT TarBase 8.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr3:120331199-120331227 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chr3:120328225-120328246 HITS-CLIP POSITIVE DIRECT TarBase 7.0
RPS6 hsa-miR-3157-5p low: 0 high: 7 1 1 1 -
High-throughput experiments (7 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr9:19379496-19379524 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr9:19379496-19379524 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:emetine
Location Method Result Regulation Validation Type Source
chr9:19379496-19379524 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr9:19379496-19379524 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr9:19379496-19379524 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr9:19379496-19379524 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr9:19379496-19379524 HITS-CLIP POSITIVE DIRECT TarBase 7.0
XPO1 hsa-miR-3157-5p low: 0 high: 5 1 1 1 -
High-throughput experiments (5 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr2:61537902-61537924 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:emetine
Location Method Result Regulation Validation Type Source
chr2:61537902-61537924 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr2:61537902-61537924 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr2:61537902-61537924 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr2:61537902-61537924 HITS-CLIP POSITIVE DIRECT TarBase 7.0
FAM98A hsa-miR-3157-5p low: 0 high: 5 1 1 1 0.935
High-throughput experiments (5 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr2:33583812-33583839 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr2:33583812-33583839 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr2:33583812-33583839 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr2:33583812-33583839 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr2:33583708-33583730 HITS-CLIP POSITIVE DIRECT TarBase 7.0
ZNF711 hsa-miR-3157-5p low: 0 high: 4 1 1 1 0.796
High-throughput experiments (4 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chrX:85264386-85264414 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chrX:85264386-85264414 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chrX:85264386-85264414 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chrX:85247091-85247113 HITS-CLIP POSITIVE DIRECT TarBase 7.0
TMEM30A hsa-miR-3157-5p low: 0 high: 4 1 1 1 -
High-throughput experiments (4 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chr6:75255416-75255439 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr6:75255416-75255439 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr6:75258961-75258978 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr6:75255416-75255439 HITS-CLIP POSITIVE DIRECT TarBase 7.0
GIGYF1 hsa-miR-3157-5p low: 0 high: 4 1 1 1 0.701
High-throughput experiments (4 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chr7:100681311-100681329 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr7:100681311-100681329 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr7:100681311-100681329 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr7:100681106-100681127 HITS-CLIP POSITIVE DIRECT TarBase 7.0
VCPKMT hsa-miR-3157-5p low: 0 high: 4 1 1 1 -
High-throughput experiments (4 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr14:50108900-50108907 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr14:50108900-50108907 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr14:50108900-50108907 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr14:50108900-50108907 HITS-CLIP POSITIVE DIRECT TarBase 7.0
STMN1 hsa-miR-3157-5p low: 0 high: 4 1 1 1 -
High-throughput experiments (4 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr1:25901647-25901674 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr1:25901647-25901674 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr1:25901647-25901674 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr1:25901647-25901674 HITS-CLIP POSITIVE DIRECT TarBase 7.0
EMD hsa-miR-3157-5p low: 0 high: 3 1 1 1 -
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chrX:154381228-154381253 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chrX:154381228-154381253 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chrX:154381228-154381253 HITS-CLIP POSITIVE DIRECT TarBase 7.0
UBQLNL hsa-miR-3157-5p low: 0 high: 3 1 1 1 0.689
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chr11:5514431-5514454 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:emetine
Location Method Result Regulation Validation Type Source
chr11:5514431-5514454 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr11:5514431-5514454 HITS-CLIP POSITIVE DIRECT TarBase 7.0
TXNIP hsa-miR-3157-5p low: 0 high: 3 1 1 1 -
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr1:145992995-145993020 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr1:145992577-145992602 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr1:145992577-145992602 HITS-CLIP POSITIVE DIRECT TarBase 7.0
BRCA1 hsa-miR-3157-5p low: 0 high: 3 1 1 1 -
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr17:43094622-43094650 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr17:43094622-43094650 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr17:43094622-43094650 HITS-CLIP POSITIVE DIRECT TarBase 7.0
GINM1 hsa-miR-3157-5p low: 0 high: 3 1 1 1 -
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr6:149590785-149590811 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr6:149590785-149590811 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chr6:149590785-149590811 HITS-CLIP POSITIVE DIRECT TarBase 7.0
DICER1 hsa-miR-3157-5p low: 0 high: 3 1 1 1 -
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr14:95112215-95112233 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr14:95096154-95096175 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr14:95090037-95090063 HITS-CLIP POSITIVE DIRECT TarBase 7.0
NPTN hsa-miR-3157-5p low: 0 high: 3 1 1 1 0.575
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chr15:73570217-73570236 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr15:73570217-73570236 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr15:73570217-73570236 HITS-CLIP POSITIVE DIRECT TarBase 7.0
FASN hsa-miR-3157-5p low: 0 high: 3 1 1 1 0.491
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr17:82087761-82087781 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr17:82085113-82085141 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr17:82081668-82081692 HITS-CLIP POSITIVE DIRECT TarBase 7.0
ZNF623 hsa-miR-3157-5p low: 0 high: 3 1 1 1 -
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr8:143655892-143655919 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr8:143655892-143655919 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr8:143655892-143655919 HITS-CLIP POSITIVE DIRECT TarBase 7.0
ORMDL3 hsa-miR-3157-5p low: 0 high: 3 1 1 1 -
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr17:39922253-39922276 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr17:39922253-39922276 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr17:39922253-39922276 HITS-CLIP POSITIVE DIRECT TarBase 7.0
CCND1 hsa-miR-3157-5p low: 0 high: 2 1 1 1 0.642
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chr11:69651916-69651938 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr11:69651916-69651938 HITS-CLIP POSITIVE DIRECT TarBase 7.0