Please cite:
Dimitra Karagkouni, Maria D. Paraskevopoulou, Serafeim Chatzopoulos, Ioannis S. Vlachos, Spyros Tastsoglou, Ilias Kanellos, Dimitris Papadimitriou, Ioannis Kavakiotis, Sofia Maniou, Giorgos Skoufos, Thanasis Vergoulis, Theodore Dalamagas, Artemis G. Hatzigeorgiou; DIANA-TarBase v8: a decade-long collection of experimentally supported miRNA–gene interactions, Nucleic Acids Research, gkx1141, https://doi.org/10.1093/nar/gkx1141
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hsa-miR-338-3p


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Filters
Interactions: 967, Experiments: (low: , high: , unknown: ) Cell lines: , Tissues: , Publications:
Gene name miRNA name Experiments
throughput
Publications Cell lines Tissues Pred. Score
SMO hsa-miR-338-3p low: 6 high: 0 5 5 3 -
Low-throughput experiments (5 positive, 1 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Elisab et al. 2008 RP Nervous DAOY DAOY N/A
Location Method Result Regulation Validation Type Source
chr7:129213467-129213489 Luciferase Reporter Assay NEGATIVE DIRECT TarBase 8.0
Kai S et al. 2014 WB Intestine SW620 N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Western Blot POSITIVE INDIRECT TarBase 7.0
Kai S et al. 2014 WB Intestine SW480 N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Western Blot POSITIVE INDIRECT TarBase 7.0
Kai S et al. 2014 RP Intestine CRC CRC N/A
Location Method Result Regulation Validation Type Source
chr7:129213467-129213489 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
Huang XH et al. 2011 WB qP N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Western Blot POSITIVE INDIRECT TarBase 6.0
UNKNOWN qPCR POSITIVE INDIRECT TarBase 6.0
Other Databases
Publication Methods Tissue Cell line Tested cell line Exp. condition
et al. O N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Other UNKNOWN UNKNOWN miRTarBase
et al. O N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Other UNKNOWN UNKNOWN miRTarBase
Huang XH et al. 2011 O N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Other UNKNOWN UNKNOWN miRTarBase
MMP2 hsa-miR-338-3p low: 2 high: 0 1 1 1 0.676
Low-throughput experiments (0 positive, 2 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Huang XH et al. 2011 WB qP N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Western Blot NEGATIVE INDIRECT TarBase 6.0
UNKNOWN qPCR NEGATIVE INDIRECT TarBase 6.0
MMP-9(hsa) hsa-miR-338-3p low: 2 high: 0 1 1 1 -
Low-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Huang XH et al. 2011 WB qP N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Western Blot POSITIVE INDIRECT TarBase 6.0
UNKNOWN qPCR POSITIVE INDIRECT TarBase 6.0
RPL23 hsa-miR-338-3p low: 0 high: 3 2 3 2 0.614
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr17:38853024-38853053 Chimeric fragments POSITIVE DIRECT TarBase 8.0
Balakrishnan I et al. 2014 IP Bone Marrow HS5 N/A N/A
Location Method Result Regulation Validation Type Source
chr17:38850145-38850168 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Balakrishnan I et al. 2014 IP Bone Marrow HS27A N/A N/A
Location Method Result Regulation Validation Type Source
chr17:38850145-38850168 HITS-CLIP POSITIVE DIRECT TarBase 7.0
CELF2 hsa-miR-338-3p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr10:11331070-11331101 Chimeric fragments POSITIVE DIRECT TarBase 8.0
HSP90AB1 hsa-miR-338-3p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr6:44253060-44253087 Chimeric fragments POSITIVE DIRECT TarBase 8.0
CMBL hsa-miR-338-3p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr5:10280396-10280425 Chimeric fragments POSITIVE DIRECT TarBase 8.0
OTUD1 hsa-miR-338-3p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr10:23441109-23441142 Chimeric fragments POSITIVE DIRECT TarBase 8.0
PCDH9 hsa-miR-338-3p low: 0 high: 14 1 1 1 -
High-throughput experiments (14 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Boudreau RL et al. 2014 IP Brain N/A N/A N/A
Location Method Result Regulation Validation Type Source
chr13:67218100-67218125 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr13:67226104-67226126 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr13:67210064-67210087 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr13:67226635-67226656 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr13:67226635-67226656 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr13:67226104-67226126 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr13:67226635-67226656 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr13:67226635-67226656 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr13:67218100-67218125 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr13:67210064-67210087 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr13:67226635-67226656 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr13:67209864-67209887 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr13:67226635-67226656 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr13:67210064-67210087 HITS-CLIP POSITIVE DIRECT TarBase 8.0
SCG2 hsa-miR-338-3p low: 0 high: 11 2 2 2 0.528
High-throughput experiments (11 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Boudreau RL et al. 2014 IP Brain N/A N/A N/A
Location Method Result Regulation Validation Type Source
chr2:223597870-223597893 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr2:223597499-223597527 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr2:223597870-223597893 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr2:223597499-223597527 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr2:223597870-223597893 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr2:223597499-223597527 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr2:223597499-223597527 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr2:223597870-223597893 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr2:223597499-223597527 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr2:223597499-223597527 HITS-CLIP POSITIVE DIRECT TarBase 8.0
Kameswaran V et al. 2014 IP Pancreas BETA Cells N/A N/A
Location Method Result Regulation Validation Type Source
chr2:223597499-223597527 HITS-CLIP POSITIVE DIRECT TarBase 7.0
CHORDC1 hsa-miR-338-3p low: 0 high: 9 1 1 1 -
High-throughput experiments (9 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr11:90202147-90202164 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr11:90202147-90202164 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr11:90202147-90202164 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr11:90202147-90202164 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr11:90202147-90202164 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr11:90202147-90202164 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr11:90202147-90202164 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr11:90202147-90202164 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr11:90202147-90202164 HITS-CLIP POSITIVE DIRECT TarBase 7.0
PCBP1 hsa-miR-338-3p low: 0 high: 8 2 3 2 0.742
High-throughput experiments (8 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Boudreau RL et al. 2014 IP Brain N/A N/A N/A
Location Method Result Regulation Validation Type Source
chr2:70088961-70088989 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr2:70088961-70088989 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr2:70088961-70088989 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr2:70088961-70088989 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr2:70088961-70088989 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr2:70088961-70088989 HITS-CLIP POSITIVE DIRECT TarBase 8.0
Eva Gottwein et al. 2011 IP Pleura BC3 N/A N/A
Location Method Result Regulation Validation Type Source
chr2:70088961-70088989 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Eva Gottwein et al. 2011 IP Pleura BC1 N/A N/A
Location Method Result Regulation Validation Type Source
chr2:70088961-70088989 PAR-CLIP POSITIVE DIRECT TarBase 7.0
NDFIP2 hsa-miR-338-3p low: 0 high: 8 2 2 2 -
High-throughput experiments (8 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Boudreau RL et al. 2014 IP Brain N/A N/A N/A
Location Method Result Regulation Validation Type Source
chr13:79554282-79554306 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr13:79555787-79555806 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr13:79554735-79554744 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr13:79554282-79554306 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr13:79554282-79554306 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr13:79555787-79555806 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr13:79554282-79554306 HITS-CLIP POSITIVE DIRECT TarBase 8.0
Kameswaran V et al. 2014 IP Pancreas BETA Cells N/A N/A
Location Method Result Regulation Validation Type Source
chr13:79539744-79539766 HITS-CLIP POSITIVE DIRECT TarBase 7.0
C8orf46 hsa-miR-338-3p low: 0 high: 8 1 1 1 -
High-throughput experiments (8 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Boudreau RL et al. 2014 IP Brain N/A N/A N/A
Location Method Result Regulation Validation Type Source
chr8:66517758-66517781 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr8:66517014-66517037 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr8:66517758-66517781 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr8:66517758-66517781 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr8:66517758-66517781 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr8:66517758-66517781 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr8:66517758-66517781 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr8:66517014-66517037 HITS-CLIP POSITIVE DIRECT TarBase 8.0
FAM171B hsa-miR-338-3p low: 0 high: 8 1 1 1 -
High-throughput experiments (8 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Boudreau RL et al. 2014 IP Brain N/A N/A N/A
Location Method Result Regulation Validation Type Source
chr2:186764795-186764816 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr2:186764795-186764816 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr2:186764795-186764816 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr2:186764795-186764816 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr2:186764795-186764816 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr2:186764795-186764816 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr2:186764795-186764816 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr2:186764795-186764816 HITS-CLIP POSITIVE DIRECT TarBase 8.0
RAD50 hsa-miR-338-3p low: 0 high: 7 2 2 2 -
High-throughput experiments (7 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr5:132638195-132638217 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr5:132638195-132638217 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr5:132638195-132638217 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr5:132638195-132638217 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr5:132638195-132638217 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr5:132638195-132638217 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Balakrishnan I et al. 2014 IP Bone Marrow HS27A N/A N/A
Location Method Result Regulation Validation Type Source
chr5:132638195-132638217 HITS-CLIP POSITIVE DIRECT TarBase 7.0
VMA21 hsa-miR-338-3p low: 0 high: 7 3 3 3 0.741
High-throughput experiments (7 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Boudreau RL et al. 2014 IP Brain N/A N/A N/A
Location Method Result Regulation Validation Type Source
chrX:151405096-151405115 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chrX:151407115-151407140 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chrX:151405096-151405115 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chrX:151405096-151405115 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chrX:151405096-151405115 HITS-CLIP POSITIVE DIRECT TarBase 8.0
Kameswaran V et al. 2014 IP Pancreas BETA Cells N/A N/A
Location Method Result Regulation Validation Type Source
chrX:151405096-151405115 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Eva Gottwein et al. 2011 IP Pleura BC1 N/A N/A
Location Method Result Regulation Validation Type Source
chrX:151405417-151405445 PAR-CLIP POSITIVE DIRECT TarBase 7.0
CLSTN1 hsa-miR-338-3p low: 0 high: 7 3 3 3 0.703
High-throughput experiments (7 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Boudreau RL et al. 2014 IP Brain N/A N/A N/A
Location Method Result Regulation Validation Type Source
chr1:9729469-9729488 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr1:9729469-9729488 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr1:9729469-9729488 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr1:9729469-9729488 HITS-CLIP POSITIVE DIRECT TarBase 8.0
Xue Y et al. 2013 IP Cervix HELA N/A Hela cells were treated with control shRNA.
Location Method Result Regulation Validation Type Source
chr1:9741098-9741119 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr1:9729469-9729488 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr1:9741098-9741119 HITS-CLIP POSITIVE DIRECT TarBase 7.0
STRAP hsa-miR-338-3p low: 0 high: 7 2 2 2 -
High-throughput experiments (7 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Boudreau RL et al. 2014 IP Brain N/A N/A N/A
Location Method Result Regulation Validation Type Source
chr12:15903090-15903118 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr12:15903090-15903118 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr12:15903090-15903118 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr12:15903090-15903118 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr12:15903090-15903118 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr12:15903090-15903118 HITS-CLIP POSITIVE DIRECT TarBase 8.0
Balakrishnan I et al. 2014 IP Bone Marrow HS27A N/A N/A
Location Method Result Regulation Validation Type Source
chr12:15903090-15903118 HITS-CLIP POSITIVE DIRECT TarBase 7.0
HMGCR hsa-miR-338-3p low: 0 high: 7 2 2 2 0.629
High-throughput experiments (7 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Boudreau RL et al. 2014 IP Brain N/A N/A N/A
Location Method Result Regulation Validation Type Source
chr5:75361981-75362008 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr5:75361981-75362008 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr5:75361981-75362008 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr5:75361981-75362008 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr5:75361981-75362008 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr5:75361981-75362008 HITS-CLIP POSITIVE DIRECT TarBase 8.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr5:75361981-75362008 HITS-CLIP POSITIVE DIRECT TarBase 7.0