Please cite:
Dimitra Karagkouni, Maria D. Paraskevopoulou, Serafeim Chatzopoulos, Ioannis S. Vlachos, Spyros Tastsoglou, Ilias Kanellos, Dimitris Papadimitriou, Ioannis Kavakiotis, Sofia Maniou, Giorgos Skoufos, Thanasis Vergoulis, Theodore Dalamagas, Artemis G. Hatzigeorgiou; DIANA-TarBase v8: a decade-long collection of experimentally supported miRNA–gene interactions, Nucleic Acids Research, gkx1141, https://doi.org/10.1093/nar/gkx1141
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hsa-miR-338-3p


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Interactions: 854, Experiments: (low: , high: , unknown: ) Cell lines: , Tissues: , Publications:
Gene name miRNA name Experiments
throughput
Publications Cell lines Tissues Pred. Score
SMO hsa-miR-338-3p low: 6 high: 0 3 5 3 -
Low-throughput experiments (5 positive, 1 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Elisab et al. 2008 RP Nervous DAOY DAOY N/A
Location Method Result Regulation Validation Type Source
chr7:129213467-129213489 Luciferase Reporter Assay NEGATIVE DIRECT TarBase 8.0
Kai S et al. 2014 WB Intestine SW620 N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Western Blot POSITIVE INDIRECT TarBase 7.0
Kai S et al. 2014 WB Intestine SW480 N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Western Blot POSITIVE INDIRECT TarBase 7.0
Kai S et al. 2014 RP Intestine CRC CRC N/A
Location Method Result Regulation Validation Type Source
chr7:129213467-129213489 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
Huang XH et al. 2011 WB qP N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Western Blot POSITIVE INDIRECT TarBase 6.0
UNKNOWN qPCR POSITIVE INDIRECT TarBase 6.0
MMP2 hsa-miR-338-3p low: 2 high: 0 1 1 1 0.676
Low-throughput experiments (0 positive, 2 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Huang XH et al. 2011 WB qP N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Western Blot NEGATIVE INDIRECT TarBase 6.0
UNKNOWN qPCR NEGATIVE INDIRECT TarBase 6.0
MMP-9(hsa) hsa-miR-338-3p low: 2 high: 0 1 1 1 -
Low-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Huang XH et al. 2011 WB qP N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Western Blot POSITIVE INDIRECT TarBase 6.0
UNKNOWN qPCR POSITIVE INDIRECT TarBase 6.0
RPL23 hsa-miR-338-3p low: 0 high: 3 2 3 2 0.614
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr17:38853024-38853053 Chimeric fragments POSITIVE DIRECT TarBase 8.0
Balakrishnan I et al. 2014 IP Bone Marrow HS5 N/A N/A
Location Method Result Regulation Validation Type Source
chr17:38850145-38850168 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Balakrishnan I et al. 2014 IP Bone Marrow HS27A N/A N/A
Location Method Result Regulation Validation Type Source
chr17:38850145-38850168 HITS-CLIP POSITIVE DIRECT TarBase 7.0
CELF2 hsa-miR-338-3p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr10:11331070-11331101 Chimeric fragments POSITIVE DIRECT TarBase 8.0
HSP90AB1 hsa-miR-338-3p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr6:44253060-44253087 Chimeric fragments POSITIVE DIRECT TarBase 8.0
CMBL hsa-miR-338-3p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr5:10280396-10280425 Chimeric fragments POSITIVE DIRECT TarBase 8.0
OTUD1 hsa-miR-338-3p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr10:23441109-23441142 Chimeric fragments POSITIVE DIRECT TarBase 8.0
PCDH9 hsa-miR-338-3p low: 0 high: 14 1 1 1 -
High-throughput experiments (14 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Boudreau RL et al. 2014 IP Brain N/A N/A N/A
Location Method Result Regulation Validation Type Source
chr13:67218100-67218125 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr13:67226104-67226126 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr13:67210064-67210087 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr13:67226635-67226656 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr13:67226635-67226656 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr13:67226104-67226126 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr13:67226635-67226656 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr13:67226635-67226656 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr13:67218100-67218125 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr13:67210064-67210087 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr13:67226635-67226656 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr13:67209864-67209887 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr13:67226635-67226656 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr13:67210064-67210087 HITS-CLIP POSITIVE DIRECT TarBase 8.0
SCG2 hsa-miR-338-3p low: 0 high: 11 2 2 2 0.528
High-throughput experiments (11 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Boudreau RL et al. 2014 IP Brain N/A N/A N/A
Location Method Result Regulation Validation Type Source
chr2:223597870-223597893 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr2:223597499-223597527 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr2:223597870-223597893 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr2:223597499-223597527 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr2:223597870-223597893 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr2:223597499-223597527 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr2:223597499-223597527 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr2:223597870-223597893 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr2:223597499-223597527 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr2:223597499-223597527 HITS-CLIP POSITIVE DIRECT TarBase 8.0
Kameswaran V et al. 2014 IP Pancreas BETA Cells N/A N/A
Location Method Result Regulation Validation Type Source
chr2:223597499-223597527 HITS-CLIP POSITIVE DIRECT TarBase 7.0
CHORDC1 hsa-miR-338-3p low: 0 high: 9 1 1 1 -
High-throughput experiments (9 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr11:90202147-90202164 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr11:90202147-90202164 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr11:90202147-90202164 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr11:90202147-90202164 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr11:90202147-90202164 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr11:90202147-90202164 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr11:90202147-90202164 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr11:90202147-90202164 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr11:90202147-90202164 HITS-CLIP POSITIVE DIRECT TarBase 7.0
PCBP1 hsa-miR-338-3p low: 0 high: 8 2 3 2 0.742
High-throughput experiments (8 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Boudreau RL et al. 2014 IP Brain N/A N/A N/A
Location Method Result Regulation Validation Type Source
chr2:70088961-70088989 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr2:70088961-70088989 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr2:70088961-70088989 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr2:70088961-70088989 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr2:70088961-70088989 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr2:70088961-70088989 HITS-CLIP POSITIVE DIRECT TarBase 8.0
Eva Gottwein et al. 2011 IP Pleura BC3 N/A N/A
Location Method Result Regulation Validation Type Source
chr2:70088961-70088989 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Eva Gottwein et al. 2011 IP Pleura BC1 N/A N/A
Location Method Result Regulation Validation Type Source
chr2:70088961-70088989 PAR-CLIP POSITIVE DIRECT TarBase 7.0
NDFIP2 hsa-miR-338-3p low: 0 high: 8 2 2 2 -
High-throughput experiments (8 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Boudreau RL et al. 2014 IP Brain N/A N/A N/A
Location Method Result Regulation Validation Type Source
chr13:79554282-79554306 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr13:79555787-79555806 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr13:79554735-79554744 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr13:79554282-79554306 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr13:79554282-79554306 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr13:79555787-79555806 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr13:79554282-79554306 HITS-CLIP POSITIVE DIRECT TarBase 8.0
Kameswaran V et al. 2014 IP Pancreas BETA Cells N/A N/A
Location Method Result Regulation Validation Type Source
chr13:79539744-79539766 HITS-CLIP POSITIVE DIRECT TarBase 7.0
C8orf46 hsa-miR-338-3p low: 0 high: 8 1 1 1 -
High-throughput experiments (8 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Boudreau RL et al. 2014 IP Brain N/A N/A N/A
Location Method Result Regulation Validation Type Source
chr8:66517758-66517781 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr8:66517014-66517037 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr8:66517758-66517781 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr8:66517758-66517781 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr8:66517758-66517781 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr8:66517758-66517781 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr8:66517758-66517781 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr8:66517014-66517037 HITS-CLIP POSITIVE DIRECT TarBase 8.0
FAM171B hsa-miR-338-3p low: 0 high: 8 1 1 1 -
High-throughput experiments (8 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Boudreau RL et al. 2014 IP Brain N/A N/A N/A
Location Method Result Regulation Validation Type Source
chr2:186764795-186764816 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr2:186764795-186764816 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr2:186764795-186764816 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr2:186764795-186764816 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr2:186764795-186764816 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr2:186764795-186764816 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr2:186764795-186764816 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr2:186764795-186764816 HITS-CLIP POSITIVE DIRECT TarBase 8.0
RAD50 hsa-miR-338-3p low: 0 high: 7 2 2 2 -
High-throughput experiments (7 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr5:132638195-132638217 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr5:132638195-132638217 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr5:132638195-132638217 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr5:132638195-132638217 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr5:132638195-132638217 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr5:132638195-132638217 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Balakrishnan I et al. 2014 IP Bone Marrow HS27A N/A N/A
Location Method Result Regulation Validation Type Source
chr5:132638195-132638217 HITS-CLIP POSITIVE DIRECT TarBase 7.0
VMA21 hsa-miR-338-3p low: 0 high: 7 3 3 3 0.741
High-throughput experiments (7 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Boudreau RL et al. 2014 IP Brain N/A N/A N/A
Location Method Result Regulation Validation Type Source
chrX:151405096-151405115 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chrX:151407115-151407140 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chrX:151405096-151405115 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chrX:151405096-151405115 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chrX:151405096-151405115 HITS-CLIP POSITIVE DIRECT TarBase 8.0
Kameswaran V et al. 2014 IP Pancreas BETA Cells N/A N/A
Location Method Result Regulation Validation Type Source
chrX:151405096-151405115 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Eva Gottwein et al. 2011 IP Pleura BC1 N/A N/A
Location Method Result Regulation Validation Type Source
chrX:151405417-151405445 PAR-CLIP POSITIVE DIRECT TarBase 7.0
CLSTN1 hsa-miR-338-3p low: 0 high: 7 3 3 3 0.703
High-throughput experiments (7 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Boudreau RL et al. 2014 IP Brain N/A N/A N/A
Location Method Result Regulation Validation Type Source
chr1:9729469-9729488 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr1:9729469-9729488 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr1:9729469-9729488 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr1:9729469-9729488 HITS-CLIP POSITIVE DIRECT TarBase 8.0
Xue Y et al. 2013 IP Cervix HELA N/A Hela cells were treated with control shRNA.
Location Method Result Regulation Validation Type Source
chr1:9741098-9741119 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr1:9729469-9729488 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr1:9741098-9741119 HITS-CLIP POSITIVE DIRECT TarBase 7.0
STRAP hsa-miR-338-3p low: 0 high: 7 2 2 2 -
High-throughput experiments (7 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Boudreau RL et al. 2014 IP Brain N/A N/A N/A
Location Method Result Regulation Validation Type Source
chr12:15903090-15903118 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr12:15903090-15903118 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr12:15903090-15903118 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr12:15903090-15903118 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr12:15903090-15903118 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr12:15903090-15903118 HITS-CLIP POSITIVE DIRECT TarBase 8.0
Balakrishnan I et al. 2014 IP Bone Marrow HS27A N/A N/A
Location Method Result Regulation Validation Type Source
chr12:15903090-15903118 HITS-CLIP POSITIVE DIRECT TarBase 7.0
HMGCR hsa-miR-338-3p low: 0 high: 7 2 2 2 0.629
High-throughput experiments (7 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Boudreau RL et al. 2014 IP Brain N/A N/A N/A
Location Method Result Regulation Validation Type Source
chr5:75361981-75362008 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr5:75361981-75362008 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr5:75361981-75362008 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr5:75361981-75362008 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr5:75361981-75362008 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr5:75361981-75362008 HITS-CLIP POSITIVE DIRECT TarBase 8.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr5:75361981-75362008 HITS-CLIP POSITIVE DIRECT TarBase 7.0