Please cite:
Dimitra Karagkouni, Maria D. Paraskevopoulou, Serafeim Chatzopoulos, Ioannis S. Vlachos, Spyros Tastsoglou, Ilias Kanellos, Dimitris Papadimitriou, Ioannis Kavakiotis, Sofia Maniou, Giorgos Skoufos, Thanasis Vergoulis, Theodore Dalamagas, Artemis G. Hatzigeorgiou; DIANA-TarBase v8: a decade-long collection of experimentally supported miRNA–gene interactions, Nucleic Acids Research, gkx1141, https://doi.org/10.1093/nar/gkx1141
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hsa-miR-365a-3p


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Interactions: 671, Experiments: (low: , high: , unknown: ) Cell lines: , Tissues: , Publications:
Gene name miRNA name Experiments
throughput
Publications Cell lines Tissues Pred. Score
ACVR1 hsa-miR-365a-3p low: 2 high: 0 1 2 2 -
Low-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Marzia Mura et al. 2012 RP Muscle C2C12 C2C12 N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
Marzia Mura et al. 2012 RP Bone U2OS U2OS N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
KRAS hsa-miR-365a-3p low: 1 high: 0 1 1 1 -
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Gastaldi C. et al. 2014 RP Skin Cutaneous Squamous Cell Carcinoma COS7 N/A
Location Method Result Regulation Validation Type Source
chr12:25206226-25206591 Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
MAX hsa-miR-365a-3p low: 1 high: 0 1 1 1 -
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Gastaldi C. et al. 2014 RP Skin Cutaneous Squamous Cell Carcinoma COS7 N/A
Location Method Result Regulation Validation Type Source
chr14:65075282-65075305 Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
GATAD2B hsa-miR-365a-3p low: 0 high: 1 1 2 2 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Helwak Aleksandra et al. 2013 IP Kidney FLPIN_TREX_293 N/A N/A
Location Method Result Regulation Validation Type Source
chr1:153809576-153809639 CLASH POSITIVE DIRECT TarBase 7.0
Other Databases
Publication Methods Tissue Cell line Tested cell line Exp. condition
Helwak Aleksandra et al. 2013 O N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Other UNKNOWN UNKNOWN miRTarBase
GPBP1 hsa-miR-365a-3p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Helwak Aleksandra et al. 2013 IP Kidney FLPIN_TREX_293 N/A N/A
Location Method Result Regulation Validation Type Source
chr5:57262860-57262909 CLASH POSITIVE DIRECT TarBase 7.0
PRKACA hsa-miR-365a-3p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Helwak Aleksandra et al. 2013 IP Kidney FLPIN_TREX_293 N/A N/A
Location Method Result Regulation Validation Type Source
chr19:14093077-14093128 CLASH POSITIVE DIRECT TarBase 7.0
STK16 hsa-miR-365a-3p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Helwak Aleksandra et al. 2013 IP Kidney FLPIN_TREX_293 N/A N/A
Location Method Result Regulation Validation Type Source
chr2:219247433-219247484 CLASH POSITIVE DIRECT TarBase 7.0
NOLC1 hsa-miR-365a-3p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Helwak Aleksandra et al. 2013 IP Kidney FLPIN_TREX_293 N/A N/A
Location Method Result Regulation Validation Type Source
chr10:102162759-102162806 CLASH POSITIVE DIRECT TarBase 7.0
JAK2 hsa-miR-365a-3p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Moore M et al. 2015 IP Liver HUH7.5 N/A N/A
Location Method Result Regulation Validation Type Source
chr9:5077575-5077650 CLEAR-CLIP POSITIVE DIRECT TarBase 8.0
ACTA1 hsa-miR-365a-3p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Moore M et al. 2015 IP Liver HUH7.5 N/A N/A
Location Method Result Regulation Validation Type Source
chr1:229432854-229432929 CLEAR-CLIP POSITIVE DIRECT TarBase 8.0
ROPN1L hsa-miR-365a-3p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Moore M et al. 2015 IP Liver HUH7.5 N/A N/A
Location Method Result Regulation Validation Type Source
chr5:10464787-10464862 CLEAR-CLIP POSITIVE DIRECT TarBase 8.0
MT-CO3 hsa-miR-365a-3p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Moore M et al. 2015 IP Liver HUH7.5 N/A N/A
Location Method Result Regulation Validation Type Source
chrMT:9926-10001 CLEAR-CLIP POSITIVE DIRECT TarBase 8.0
PANK3 hsa-miR-365a-3p low: 0 high: 11 3 3 3 0.856
High-throughput experiments (11 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Boudreau RL et al. 2014 IP Brain N/A N/A N/A
Location Method Result Regulation Validation Type Source
chr5:168550445-168550462 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr5:168550445-168550462 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr5:168550445-168550462 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr5:168550445-168550462 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr5:168550445-168550462 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr5:168550445-168550462 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr5:168550445-168550462 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr5:168550445-168550462 HITS-CLIP POSITIVE DIRECT TarBase 8.0
Skalsky Rebecca L. et al. 2012 IP N/A EF3DAGO2 N/A N/A
Location Method Result Regulation Validation Type Source
chr5:168550937-168550943 PAR-CLIP POSITIVE DIRECT TarBase 7.0
chr5:168550445-168550462 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Pillai MM et al. 2014 IP Mammary Gland BT474 N/A N/A
Location Method Result Regulation Validation Type Source
chr5:168550445-168550462 HITS-CLIP POSITIVE DIRECT TarBase 7.0
HIST1H4C hsa-miR-365a-3p low: 0 high: 9 2 2 2 -
High-throughput experiments (9 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Boudreau RL et al. 2014 IP Brain N/A N/A N/A
Location Method Result Regulation Validation Type Source
chr6:26104017-26104038 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr6:26104017-26104038 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr6:26104017-26104038 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr6:26104017-26104038 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr6:26104017-26104038 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr6:26104017-26104038 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr6:26104017-26104038 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr6:26104017-26104038 HITS-CLIP POSITIVE DIRECT TarBase 8.0
Pillai MM et al. 2014 IP Mammary Gland BT474 N/A N/A
Location Method Result Regulation Validation Type Source
chr6:26104017-26104038 HITS-CLIP POSITIVE DIRECT TarBase 7.0
ZNF644 hsa-miR-365a-3p low: 0 high: 8 4 5 4 -
High-throughput experiments (8 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Boudreau RL et al. 2014 IP Brain N/A N/A N/A
Location Method Result Regulation Validation Type Source
chr1:90916328-90916340 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr1:90916328-90916340 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr1:90916328-90916340 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr1:90916328-90916340 HITS-CLIP POSITIVE DIRECT TarBase 8.0
Xue Y et al. 2013 IP Cervix HELA N/A Hela cells were treated with control shRNA.
Location Method Result Regulation Validation Type Source
chr1:90916328-90916340 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Skalsky Rebecca L. et al. 2012 IP N/A LCLBACD3 N/A N/A
Location Method Result Regulation Validation Type Source
chr1:90916328-90916340 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Skalsky Rebecca L. et al. 2012 IP N/A LCL35 N/A N/A
Location Method Result Regulation Validation Type Source
chr1:90916328-90916340 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Pillai MM et al. 2014 IP Mammary Gland BT474 N/A N/A
Location Method Result Regulation Validation Type Source
chr1:90916328-90916340 HITS-CLIP POSITIVE DIRECT TarBase 7.0
CHEK1 hsa-miR-365a-3p low: 0 high: 8 2 2 2 -
High-throughput experiments (8 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr11:125657018-125657038 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr11:125657018-125657038 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr11:125657018-125657038 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr11:125657018-125657038 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr11:125657018-125657038 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr11:125657018-125657038 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr11:125657018-125657038 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Haecker Irina et al. 2012 IP Bone Marrow BCBL1 N/A N/A
Location Method Result Regulation Validation Type Source
chr11:125657018-125657038 HITS-CLIP POSITIVE DIRECT TarBase 7.0
NR1D2 hsa-miR-365a-3p low: 0 high: 8 2 2 2 -
High-throughput experiments (8 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Boudreau RL et al. 2014 IP Brain N/A N/A N/A
Location Method Result Regulation Validation Type Source
chr3:23979926-23979934 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr3:23979926-23979934 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr3:23979926-23979934 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr3:23979926-23979934 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr3:23979926-23979934 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr3:23979926-23979934 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr3:23979926-23979934 HITS-CLIP POSITIVE DIRECT TarBase 8.0
Xue Y et al. 2013 IP Cervix HELA N/A Hela cells were treated with control shRNA.
Location Method Result Regulation Validation Type Source
chr3:23979926-23979934 HITS-CLIP POSITIVE DIRECT TarBase 7.0
UBL3 hsa-miR-365a-3p low: 0 high: 7 3 2 3 0.593
High-throughput experiments (7 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Boudreau RL et al. 2014 IP Brain N/A N/A N/A
Location Method Result Regulation Validation Type Source
chr13:29766876-29766893 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr13:29849968-29849976 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr13:29849968-29849976 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr13:29849968-29849976 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr13:29849968-29849976 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr13:29766876-29766893 HITS-CLIP POSITIVE DIRECT TarBase 8.0
Pillai MM et al. 2014 IP Mammary Gland BT474 N/A N/A
Location Method Result Regulation Validation Type Source
chr13:29849968-29849976 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Other Databases
Publication Methods Tissue Cell line Tested cell line Exp. condition
Eva Gottwein et al. 2011 O N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Other UNKNOWN UNKNOWN miRTarBase
RAPGEF6 hsa-miR-365a-3p low: 0 high: 7 2 4 2 0.701
High-throughput experiments (7 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Boudreau RL et al. 2014 IP Brain N/A N/A N/A
Location Method Result Regulation Validation Type Source
chr5:131426913-131426920 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr5:131426913-131426920 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr5:131426913-131426920 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr5:131426913-131426920 HITS-CLIP POSITIVE DIRECT TarBase 8.0
Skalsky Rebecca L. et al. 2012 IP N/A LCLBAC N/A N/A
Location Method Result Regulation Validation Type Source
chr5:131426913-131426920 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Skalsky Rebecca L. et al. 2012 IP N/A LCLBACD1 N/A N/A
Location Method Result Regulation Validation Type Source
chr5:131426913-131426920 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Skalsky Rebecca L. et al. 2012 IP N/A LCL35 N/A N/A
Location Method Result Regulation Validation Type Source
chr5:131426913-131426920 PAR-CLIP POSITIVE DIRECT TarBase 7.0
ZNF680 hsa-miR-365a-3p low: 0 high: 7 4 4 4 -
High-throughput experiments (7 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Boudreau RL et al. 2014 IP Brain N/A N/A N/A
Location Method Result Regulation Validation Type Source
chr7:64520179-64520193 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr7:64520179-64520193 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr7:64520179-64520193 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr7:64520179-64520193 HITS-CLIP POSITIVE DIRECT TarBase 8.0
Xue Y et al. 2013 IP Cervix HELA N/A Hela cells were treated with control shRNA.
Location Method Result Regulation Validation Type Source
chr7:64520144-64520162 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Skalsky Rebecca L. et al. 2012 IP N/A LCLBAC N/A N/A
Location Method Result Regulation Validation Type Source
chr7:64520144-64520162 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Pillai MM et al. 2014 IP Mammary Gland BT474 N/A N/A
Location Method Result Regulation Validation Type Source
chr7:64520179-64520193 HITS-CLIP POSITIVE DIRECT TarBase 7.0