Please cite:
Dimitra Karagkouni, Maria D. Paraskevopoulou, Serafeim Chatzopoulos, Ioannis S. Vlachos, Spyros Tastsoglou, Ilias Kanellos, Dimitris Papadimitriou, Ioannis Kavakiotis, Sofia Maniou, Giorgos Skoufos, Thanasis Vergoulis, Theodore Dalamagas, Artemis G. Hatzigeorgiou; DIANA-TarBase v8: a decade-long collection of experimentally supported miRNA–gene interactions, Nucleic Acids Research, gkx1141, https://doi.org/10.1093/nar/gkx1141
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hsa-miR-365b-3p


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Interactions: 396, Experiments: (low: , high: , unknown: ) Cell lines: , Tissues: , Publications:
Gene name miRNA name Experiments
throughput
Publications Cell lines Tissues Pred. Score
PANK3 hsa-miR-365b-3p low: 0 high: 10 2 2 2 0.856
High-throughput experiments (10 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Boudreau RL et al. 2014 IP Brain N/A N/A N/A
Location Method Result Regulation Validation Type Source
chr5:168550445-168550462 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr5:168550445-168550462 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr5:168550445-168550462 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr5:168550445-168550462 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr5:168550445-168550462 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr5:168550445-168550462 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr5:168550445-168550462 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr5:168550445-168550462 HITS-CLIP POSITIVE DIRECT TarBase 8.0
Skalsky Rebecca L. et al. 2012 IP N/A EF3DAGO2 N/A N/A
Location Method Result Regulation Validation Type Source
chr5:168550937-168550943 PAR-CLIP POSITIVE DIRECT TarBase 7.0
chr5:168550445-168550462 PAR-CLIP POSITIVE DIRECT TarBase 7.0
HIST1H4C hsa-miR-365b-3p low: 0 high: 8 1 1 1 -
High-throughput experiments (8 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Boudreau RL et al. 2014 IP Brain N/A N/A N/A
Location Method Result Regulation Validation Type Source
chr6:26104017-26104038 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr6:26104017-26104038 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr6:26104017-26104038 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr6:26104017-26104038 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr6:26104017-26104038 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr6:26104017-26104038 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr6:26104017-26104038 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr6:26104017-26104038 HITS-CLIP POSITIVE DIRECT TarBase 8.0
RAPGEF6 hsa-miR-365b-3p low: 0 high: 7 2 4 2 0.701
High-throughput experiments (7 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Boudreau RL et al. 2014 IP Brain N/A N/A N/A
Location Method Result Regulation Validation Type Source
chr5:131426913-131426920 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr5:131426913-131426920 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr5:131426913-131426920 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr5:131426913-131426920 HITS-CLIP POSITIVE DIRECT TarBase 8.0
Skalsky Rebecca L. et al. 2012 IP N/A LCLBAC N/A N/A
Location Method Result Regulation Validation Type Source
chr5:131426913-131426920 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Skalsky Rebecca L. et al. 2012 IP N/A LCLBACD1 N/A N/A
Location Method Result Regulation Validation Type Source
chr5:131426913-131426920 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Skalsky Rebecca L. et al. 2012 IP N/A LCL35 N/A N/A
Location Method Result Regulation Validation Type Source
chr5:131426913-131426920 PAR-CLIP POSITIVE DIRECT TarBase 7.0
CHEK1 hsa-miR-365b-3p low: 0 high: 7 1 1 1 -
High-throughput experiments (7 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr11:125657018-125657038 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr11:125657018-125657038 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr11:125657018-125657038 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr11:125657018-125657038 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr11:125657018-125657038 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr11:125657018-125657038 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr11:125657018-125657038 HITS-CLIP POSITIVE DIRECT TarBase 7.0
OXR1 hsa-miR-365b-3p low: 0 high: 7 2 2 2 -
High-throughput experiments (7 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Boudreau RL et al. 2014 IP Brain N/A N/A N/A
Location Method Result Regulation Validation Type Source
chr8:106751327-106751336 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr8:106751719-106751733 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr8:106751327-106751336 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr8:106751327-106751336 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr8:106751719-106751733 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr8:106751719-106751733 HITS-CLIP POSITIVE DIRECT TarBase 8.0
Skalsky Rebecca L. et al. 2012 IP N/A EF3DAGO2 N/A N/A
Location Method Result Regulation Validation Type Source
chr8:106751327-106751336 PAR-CLIP POSITIVE DIRECT TarBase 7.0
MYO5A hsa-miR-365b-3p low: 0 high: 7 1 1 1 -
High-throughput experiments (7 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Boudreau RL et al. 2014 IP Brain N/A N/A N/A
Location Method Result Regulation Validation Type Source
chr15:52308181-52308189 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr15:52309229-52309257 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr15:52309229-52309257 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr15:52309229-52309257 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr15:52307559-52307566 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr15:52308181-52308189 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr15:52309229-52309257 HITS-CLIP POSITIVE DIRECT TarBase 8.0
ATP6V1G1 hsa-miR-365b-3p low: 0 high: 7 1 1 1 -
High-throughput experiments (7 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Boudreau RL et al. 2014 IP Brain N/A N/A N/A
Location Method Result Regulation Validation Type Source
chr9:114597833-114597840 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr9:114597833-114597840 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr9:114597833-114597840 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr9:114597833-114597840 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr9:114597833-114597840 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr9:114597833-114597840 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr9:114597833-114597840 HITS-CLIP POSITIVE DIRECT TarBase 8.0
LZTS3 hsa-miR-365b-3p low: 0 high: 7 1 1 1 -
High-throughput experiments (7 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Boudreau RL et al. 2014 IP Brain N/A N/A N/A
Location Method Result Regulation Validation Type Source
chr20:3162786-3162807 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr20:3162786-3162807 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr20:3162786-3162807 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr20:3162786-3162807 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr20:3162786-3162807 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr20:3162786-3162807 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr20:3162786-3162807 HITS-CLIP POSITIVE DIRECT TarBase 8.0
PCDH9 hsa-miR-365b-3p low: 0 high: 7 1 1 1 -
High-throughput experiments (7 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Boudreau RL et al. 2014 IP Brain N/A N/A N/A
Location Method Result Regulation Validation Type Source
chr13:67208199-67208212 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr13:67208199-67208212 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr13:67208199-67208212 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr13:67208199-67208212 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr13:67208199-67208212 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr13:67208199-67208212 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr13:67208199-67208212 HITS-CLIP POSITIVE DIRECT TarBase 8.0
NR1D2 hsa-miR-365b-3p low: 0 high: 7 1 1 1 -
High-throughput experiments (7 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Boudreau RL et al. 2014 IP Brain N/A N/A N/A
Location Method Result Regulation Validation Type Source
chr3:23979926-23979934 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr3:23979926-23979934 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr3:23979926-23979934 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr3:23979926-23979934 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr3:23979926-23979934 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr3:23979926-23979934 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr3:23979926-23979934 HITS-CLIP POSITIVE DIRECT TarBase 8.0
UBL3 hsa-miR-365b-3p low: 0 high: 6 1 1 1 -
High-throughput experiments (6 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Boudreau RL et al. 2014 IP Brain N/A N/A N/A
Location Method Result Regulation Validation Type Source
chr13:29766876-29766893 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr13:29849968-29849976 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr13:29849968-29849976 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr13:29849968-29849976 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr13:29849968-29849976 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr13:29766876-29766893 HITS-CLIP POSITIVE DIRECT TarBase 8.0
ZNF644 hsa-miR-365b-3p low: 0 high: 6 2 3 2 -
High-throughput experiments (6 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Boudreau RL et al. 2014 IP Brain N/A N/A N/A
Location Method Result Regulation Validation Type Source
chr1:90916328-90916340 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr1:90916328-90916340 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr1:90916328-90916340 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr1:90916328-90916340 HITS-CLIP POSITIVE DIRECT TarBase 8.0
Skalsky Rebecca L. et al. 2012 IP N/A LCLBACD3 N/A N/A
Location Method Result Regulation Validation Type Source
chr1:90916328-90916340 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Skalsky Rebecca L. et al. 2012 IP N/A LCL35 N/A N/A
Location Method Result Regulation Validation Type Source
chr1:90916328-90916340 PAR-CLIP POSITIVE DIRECT TarBase 7.0
PSIP1 hsa-miR-365b-3p low: 0 high: 6 2 3 2 -
High-throughput experiments (6 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Boudreau RL et al. 2014 IP Brain N/A N/A N/A
Location Method Result Regulation Validation Type Source
chr9:15471025-15471051 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr9:15471025-15471051 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr9:15471025-15471051 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr9:15471025-15471051 HITS-CLIP POSITIVE DIRECT TarBase 8.0
Skalsky Rebecca L. et al. 2012 IP N/A LCL35 N/A N/A
Location Method Result Regulation Validation Type Source
chr9:15471025-15471051 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Skalsky Rebecca L. et al. 2012 IP N/A EF3DAGO2 N/A N/A
Location Method Result Regulation Validation Type Source
chr9:15471025-15471051 PAR-CLIP POSITIVE DIRECT TarBase 7.0
ZNF483 hsa-miR-365b-3p low: 0 high: 6 1 1 1 -
High-throughput experiments (6 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Boudreau RL et al. 2014 IP Brain N/A N/A N/A
Location Method Result Regulation Validation Type Source
chr9:111544396-111544407 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr9:111544396-111544407 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr9:111544396-111544407 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr9:111544396-111544407 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr9:111544396-111544407 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr9:111544396-111544407 HITS-CLIP POSITIVE DIRECT TarBase 8.0
FMN2 hsa-miR-365b-3p low: 0 high: 6 1 1 1 -
High-throughput experiments (6 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Boudreau RL et al. 2014 IP Brain N/A N/A N/A
Location Method Result Regulation Validation Type Source
chr1:240475066-240475073 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr1:240475066-240475073 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr1:240475066-240475073 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr1:240475066-240475073 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr1:240475066-240475073 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr1:240475066-240475073 HITS-CLIP POSITIVE DIRECT TarBase 8.0
SGTB hsa-miR-365b-3p low: 0 high: 6 1 1 1 -
High-throughput experiments (6 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Boudreau RL et al. 2014 IP Brain N/A N/A N/A
Location Method Result Regulation Validation Type Source
chr5:65669072-65669090 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr5:65669072-65669090 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr5:65666318-65666329 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr5:65669072-65669090 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr5:65666515-65666526 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr5:65666515-65666526 HITS-CLIP POSITIVE DIRECT TarBase 8.0
ZMYND11 hsa-miR-365b-3p low: 0 high: 6 1 1 1 -
High-throughput experiments (6 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Boudreau RL et al. 2014 IP Brain N/A N/A N/A
Location Method Result Regulation Validation Type Source
chr10:252672-252684 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr10:252946-252953 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr10:252946-252953 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr10:252946-252953 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr10:252672-252684 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr10:252946-252953 HITS-CLIP POSITIVE DIRECT TarBase 8.0
ADCYAP1R1 hsa-miR-365b-3p low: 0 high: 6 1 1 1 -
High-throughput experiments (6 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Boudreau RL et al. 2014 IP Brain N/A N/A N/A
Location Method Result Regulation Validation Type Source
chr7:31108692-31108710 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr7:31108692-31108710 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr7:31108692-31108710 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr7:31108692-31108710 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr7:31108692-31108710 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr7:31108692-31108710 HITS-CLIP POSITIVE DIRECT TarBase 8.0
LONRF2 hsa-miR-365b-3p low: 0 high: 6 1 1 1 -
High-throughput experiments (6 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Boudreau RL et al. 2014 IP Brain N/A N/A N/A
Location Method Result Regulation Validation Type Source
chr2:100282585-100282592 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr2:100282585-100282592 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr2:100282585-100282592 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr2:100282585-100282592 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr2:100282585-100282592 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr2:100282585-100282592 HITS-CLIP POSITIVE DIRECT TarBase 8.0
SLC2A3 hsa-miR-365b-3p low: 0 high: 6 1 1 1 -
High-throughput experiments (6 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Boudreau RL et al. 2014 IP Brain N/A N/A N/A
Location Method Result Regulation Validation Type Source
chr12:7920469-7920495 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr12:7920469-7920495 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr12:7920469-7920495 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr12:7920469-7920495 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr12:7920469-7920495 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr12:7920469-7920495 HITS-CLIP POSITIVE DIRECT TarBase 8.0