Please cite:
Dimitra Karagkouni, Maria D. Paraskevopoulou, Serafeim Chatzopoulos, Ioannis S. Vlachos, Spyros Tastsoglou, Ilias Kanellos, Dimitris Papadimitriou, Ioannis Kavakiotis, Sofia Maniou, Giorgos Skoufos, Thanasis Vergoulis, Theodore Dalamagas, Artemis G. Hatzigeorgiou; DIANA-TarBase v8: a decade-long collection of experimentally supported miRNA–gene interactions, Nucleic Acids Research, gkx1141, https://doi.org/10.1093/nar/gkx1141
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hsa-miR-423-3p


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Filters
Interactions: 618, Experiments: (low: , high: , unknown: ) Cell lines: , Tissues: , Publications:
Gene name miRNA name Experiments
throughput
Publications Cell lines Tissues Pred. Score
CDKN1A hsa-miR-423-3p low: 1 high: 0 1 2 2 -
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Wu S et al. 2010 RP Kidney HEK293 HEK293 N/A
Location Method Result Regulation Validation Type Source
chr6:36685816-36687315 Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
Other Databases
Publication Methods Tissue Cell line Tested cell line Exp. condition
Wu S et al. 2010 O N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Other UNKNOWN UNKNOWN miRTarBase
DDX6 hsa-miR-423-3p low: 0 high: 3 2 2 2 -
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr11:118750028-118750055 Chimeric fragments POSITIVE DIRECT TarBase 8.0
chr11:118754773-118754797 Chimeric fragments POSITIVE DIRECT TarBase 8.0
Eva Gottwein et al. 2011 IP Pleura BC1 N/A N/A
Location Method Result Regulation Validation Type Source
chr11:118754778-118754805 PAR-CLIP POSITIVE DIRECT TarBase 7.0
PRRC2C hsa-miR-423-3p low: 0 high: 3 2 2 1 -
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr1:171577567-171577597 Chimeric fragments POSITIVE DIRECT TarBase 8.0
chr1:171514591-171514624 Chimeric fragments POSITIVE DIRECT TarBase 8.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr1:171592959-171592987 HITS-CLIP POSITIVE DIRECT TarBase 7.0
FEM1A hsa-miR-423-3p low: 0 high: 2 2 3 2 -
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Helwak Aleksandra et al. 2013 IP Kidney FLPIN_TREX_293 N/A N/A
Location Method Result Regulation Validation Type Source
chr19:4794296-4794358 CLASH POSITIVE DIRECT TarBase 7.0
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr19:4793748-4793774 Chimeric fragments POSITIVE DIRECT TarBase 8.0
Other Databases
Publication Methods Tissue Cell line Tested cell line Exp. condition
Helwak Aleksandra et al. 2013 O N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Other UNKNOWN UNKNOWN miRTarBase
EXOC1 hsa-miR-423-3p low: 0 high: 2 1 2 2 -
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Pleura B lymphocyte N/A N/A
Location Method Result Regulation Validation Type Source
chr4:55904545-55904567 Chimeric fragments POSITIVE DIRECT TarBase 8.0
Grosswendt S et al. 2014 IP Embryo ESC N/A N/A
Location Method Result Regulation Validation Type Source
chr4:55904545-55904567 Chimeric fragments POSITIVE DIRECT TarBase 8.0
CBX3 hsa-miR-423-3p low: 0 high: 2 1 2 2 -
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Pleura B lymphocyte N/A N/A
Location Method Result Regulation Validation Type Source
chr7:26212690-26212723 Chimeric fragments POSITIVE DIRECT TarBase 8.0
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr7:26212690-26212723 Chimeric fragments POSITIVE DIRECT TarBase 8.0
NUMB hsa-miR-423-3p low: 0 high: 2 1 2 2 -
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Embryo ESC N/A N/A
Location Method Result Regulation Validation Type Source
chr14:73276249-73276280 Chimeric fragments POSITIVE DIRECT TarBase 8.0
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr14:73276249-73276280 Chimeric fragments POSITIVE DIRECT TarBase 8.0
TMX1 hsa-miR-423-3p low: 0 high: 2 1 2 2 -
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr14:51254733-51254766 Chimeric fragments POSITIVE DIRECT TarBase 8.0
Grosswendt S et al. 2014 IP Embryo ESC N/A N/A
Location Method Result Regulation Validation Type Source
chr14:51254733-51254766 Chimeric fragments POSITIVE DIRECT TarBase 8.0
BCL2 hsa-miR-423-3p low: 0 high: 2 1 2 2 -
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr18:63128298-63128331 Chimeric fragments POSITIVE DIRECT TarBase 8.0
Grosswendt S et al. 2014 IP Embryo ESC N/A N/A
Location Method Result Regulation Validation Type Source
chr18:63128298-63128331 Chimeric fragments POSITIVE DIRECT TarBase 8.0
CBX6 hsa-miR-423-3p low: 0 high: 2 1 2 2 -
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Pleura B lymphocyte N/A N/A
Location Method Result Regulation Validation Type Source
chr22:38863409-38863432 Chimeric fragments POSITIVE DIRECT TarBase 8.0
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr22:38861568-38861594 Chimeric fragments POSITIVE DIRECT TarBase 8.0
HSP90AA1 hsa-miR-423-3p low: 0 high: 2 1 1 1 -
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr14:102084713-102084739 Chimeric fragments POSITIVE DIRECT TarBase 8.0
chr14:102086033-102086058 Chimeric fragments POSITIVE DIRECT TarBase 8.0
EIF3B hsa-miR-423-3p low: 0 high: 2 1 1 1 -
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr7:2380561-2380583 Chimeric fragments POSITIVE DIRECT TarBase 8.0
chr7:2377033-2377063 Chimeric fragments POSITIVE DIRECT TarBase 8.0
PSMG2 hsa-miR-423-3p low: 0 high: 2 1 1 1 -
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr18:12720513-12720546 Chimeric fragments POSITIVE DIRECT TarBase 8.0
chr18:12725659-12725690 Chimeric fragments POSITIVE DIRECT TarBase 8.0
KIF5B hsa-miR-423-3p low: 0 high: 2 1 1 1 -
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr10:32011215-32011247 Chimeric fragments POSITIVE DIRECT TarBase 8.0
chr10:32011135-32011164 Chimeric fragments POSITIVE DIRECT TarBase 8.0
RPLP1 hsa-miR-423-3p low: 0 high: 5 5 5 4 -
High-throughput experiments (5 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Helwak Aleksandra et al. 2013 IP Kidney FLPIN_TREX_293 N/A N/A
Location Method Result Regulation Validation Type Source
chr15:69452922-69453017 CLASH POSITIVE DIRECT TarBase 7.0
Whisnant Adam W et al. 2013 IP Cervix TZMBL N/A shRNAs against HIV-1
Location Method Result Regulation Validation Type Source
chr15:69452950-69452968 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Pillai MM et al. 2014 IP Mammary Gland MDAMB231 N/A N/A
Location Method Result Regulation Validation Type Source
chr15:69452950-69452968 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Kishore S et al. 2011 IP Kidney HEK293 N/A mild MNase digestion
Location Method Result Regulation Validation Type Source
chr15:69452950-69452968 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Hafner M. et al. 2010 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN PAR-CLIP POSITIVE DIRECT TarBase 6.0
Other Databases
Publication Methods Tissue Cell line Tested cell line Exp. condition
Helwak Aleksandra et al. 2013 O N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Other UNKNOWN UNKNOWN miRTarBase
MTDH hsa-miR-423-3p low: 0 high: 4 4 4 4 0.532
High-throughput experiments (4 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr8:97722990-97723018 Chimeric fragments POSITIVE DIRECT TarBase 8.0
Whisnant Adam W et al. 2013 IP Cervix TZMBL N/A shRNAs against HIV-1
Location Method Result Regulation Validation Type Source
chr8:97722894-97722915 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Skalsky Rebecca L. et al. 2012 IP N/A EF3DAGO2 N/A N/A
Location Method Result Regulation Validation Type Source
chr8:97722894-97722915 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Eva Gottwein et al. 2011 IP Pleura BC1 N/A N/A
Location Method Result Regulation Validation Type Source
chr8:97722894-97722915 PAR-CLIP POSITIVE DIRECT TarBase 7.0
TGOLN2 hsa-miR-423-3p low: 0 high: 4 3 2 2 -
High-throughput experiments (4 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr2:85322000-85322017 Chimeric fragments POSITIVE DIRECT TarBase 8.0
Xue Y et al. 2013 IP Cervix HELA N/A Hela cells were treated with control shRNA.
Location Method Result Regulation Validation Type Source
chr2:85321990-85322016 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Kishore S et al. 2011 IP Kidney HEK293 N/A mild MNase digestion
Location Method Result Regulation Validation Type Source
chr2:85321990-85322016 PAR-CLIP POSITIVE DIRECT TarBase 7.0
chr2:85321990-85322016 PAR-CLIP POSITIVE DIRECT TarBase 7.0
MDM2 hsa-miR-423-3p low: 0 high: 3 3 2 1 -
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr12:68842195-68842230 Chimeric fragments POSITIVE DIRECT TarBase 8.0
Kishore S et al. 2011 IP Kidney HEK293 N/A mild MNase digestion
Location Method Result Regulation Validation Type Source
chr12:68841890-68841918 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr12:68808270-68808296 HITS-CLIP POSITIVE DIRECT TarBase 7.0
MTF1 hsa-miR-423-3p low: 0 high: 3 3 2 2 -
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr1:37857310-37857338 Chimeric fragments POSITIVE DIRECT TarBase 8.0
Whisnant Adam W et al. 2013 IP Cervix TZMBL N/A shRNAs against HIV-1
Location Method Result Regulation Validation Type Source
chr1:37822600-37822625 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Kishore S et al. 2011 IP Kidney HEK293 N/A mild MNase digestion
Location Method Result Regulation Validation Type Source
chr1:37822600-37822625 PAR-CLIP POSITIVE DIRECT TarBase 7.0
MYLIP hsa-miR-423-3p low: 0 high: 2 2 1 1 -
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr6:16147610-16147644 Chimeric fragments POSITIVE DIRECT TarBase 8.0
Kishore S et al. 2011 IP Kidney HEK293 N/A mild MNase digestion
Location Method Result Regulation Validation Type Source
chr6:16143811-16143836 PAR-CLIP POSITIVE DIRECT TarBase 7.0