Please cite:
Dimitra Karagkouni, Maria D. Paraskevopoulou, Serafeim Chatzopoulos, Ioannis S. Vlachos, Spyros Tastsoglou, Ilias Kanellos, Dimitris Papadimitriou, Ioannis Kavakiotis, Sofia Maniou, Giorgos Skoufos, Thanasis Vergoulis, Theodore Dalamagas, Artemis G. Hatzigeorgiou; DIANA-TarBase v8: a decade-long collection of experimentally supported miRNA–gene interactions, Nucleic Acids Research, gkx1141, https://doi.org/10.1093/nar/gkx1141
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hsa-miR-499a-3p


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Interactions: 454, Experiments: (low: , high: , unknown: ) Cell lines: , Tissues: , Publications:
Gene name miRNA name Experiments
throughput
Publications Cell lines Tissues Pred. Score
TRAF5 hsa-miR-499a-3p low: 1 high: 0 1 1 1 0.770
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Jie Ding et al. 2013 RP Liver HCC Cell Lines HEK293T N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
TAB3 hsa-miR-499a-3p low: 1 high: 0 1 1 1 -
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Jie Ding et al. 2013 RP Liver HCC Cell Lines HEK293T N/A
Location Method Result Regulation Validation Type Source
chrX:30829319-30831425 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
TMEM43 hsa-miR-499a-3p low: 0 high: 13 1 1 1 -
High-throughput experiments (13 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr3:14130850-14130876 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr3:14130850-14130876 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr3:14130850-14130876 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chr3:14130850-14130876 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr3:14130850-14130876 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:emetine
Location Method Result Regulation Validation Type Source
chr3:14130850-14130876 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr3:14130850-14130876 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr3:14130850-14130876 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr3:14130850-14130876 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr3:14130850-14130876 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr3:14130850-14130876 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr3:14130850-14130876 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr3:14130850-14130876 HITS-CLIP POSITIVE DIRECT TarBase 7.0
SRSF1 hsa-miR-499a-3p low: 0 high: 8 1 1 1 0.717
High-throughput experiments (8 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr17:58005159-58005174 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr17:58005113-58005140 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr17:58004110-58004136 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr17:58005113-58005140 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr17:58005113-58005140 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr17:58005113-58005140 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr17:58005113-58005140 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr17:58004110-58004136 HITS-CLIP POSITIVE DIRECT TarBase 7.0
FAM13A hsa-miR-499a-3p low: 0 high: 6 1 1 1 0.516
High-throughput experiments (6 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr4:88726699-88726720 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr4:88726699-88726720 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chr4:88726699-88726720 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr4:88726699-88726720 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr4:88726699-88726720 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr4:88726699-88726720 HITS-CLIP POSITIVE DIRECT TarBase 7.0
ITGA6 hsa-miR-499a-3p low: 0 high: 6 1 1 1 -
High-throughput experiments (6 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr2:172504737-172504759 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr2:172504737-172504759 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr2:172504737-172504759 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr2:172504737-172504759 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr2:172504737-172504759 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr2:172504737-172504759 HITS-CLIP POSITIVE DIRECT TarBase 7.0
BCL2L11 hsa-miR-499a-3p low: 0 high: 6 1 1 1 -
High-throughput experiments (6 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr2:111167028-111167052 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr2:111167028-111167052 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr2:111167028-111167052 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr2:111167028-111167052 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chr2:111167028-111167052 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr2:111166633-111166654 HITS-CLIP POSITIVE DIRECT TarBase 7.0
C6orf48 hsa-miR-499a-3p low: 0 high: 6 1 1 1 -
High-throughput experiments (6 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr6:31837096-31837123 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr6:31837096-31837123 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr6:31837096-31837123 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr6:31837096-31837123 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr6:31837096-31837123 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr6:31837096-31837123 HITS-CLIP POSITIVE DIRECT TarBase 7.0
AHNAK hsa-miR-499a-3p low: 0 high: 6 1 2 1 0.624
High-throughput experiments (6 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Balakrishnan I et al. 2014 IP Bone Marrow HS5 N/A N/A
Location Method Result Regulation Validation Type Source
chr11:62532830-62532852 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr11:62532603-62532629 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr11:62521341-62521367 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Balakrishnan I et al. 2014 IP Bone Marrow HS27A N/A N/A
Location Method Result Regulation Validation Type Source
chr11:62532603-62532629 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr11:62523351-62523376 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr11:62517906-62517927 HITS-CLIP POSITIVE DIRECT TarBase 7.0
SOX11 hsa-miR-499a-3p low: 0 high: 4 1 1 1 0.799
High-throughput experiments (4 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr2:5695357-5695376 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr2:5695357-5695376 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr2:5694696-5694717 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chr2:5694696-5694717 HITS-CLIP POSITIVE DIRECT TarBase 7.0
MYCBP2 hsa-miR-499a-3p low: 0 high: 4 1 1 1 -
High-throughput experiments (4 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr13:77177746-77177769 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr13:77177746-77177769 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:emetine
Location Method Result Regulation Validation Type Source
chr13:77177746-77177769 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr13:77177746-77177769 HITS-CLIP POSITIVE DIRECT TarBase 7.0
DDX17 hsa-miR-499a-3p low: 0 high: 4 2 2 2 0.582
High-throughput experiments (4 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr22:38499443-38499469 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr22:38486387-38486410 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Balakrishnan I et al. 2014 IP Bone Marrow HS5 N/A N/A
Location Method Result Regulation Validation Type Source
chr22:38494049-38494072 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr22:38486387-38486410 HITS-CLIP POSITIVE DIRECT TarBase 7.0
CCND2 hsa-miR-499a-3p low: 0 high: 4 1 1 1 0.479
High-throughput experiments (4 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chr12:4303216-4303235 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr12:4300623-4300651 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr12:4303216-4303235 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr12:4300623-4300651 HITS-CLIP POSITIVE DIRECT TarBase 7.0
TNPO1 hsa-miR-499a-3p low: 0 high: 4 2 2 2 0.932
High-throughput experiments (4 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chr5:72913096-72913124 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Balakrishnan I et al. 2014 IP Bone Marrow HS5 N/A N/A
Location Method Result Regulation Validation Type Source
chr5:72912280-72912299 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr5:72911745-72911772 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr5:72875663-72875685 HITS-CLIP POSITIVE DIRECT TarBase 7.0
NAPG hsa-miR-499a-3p low: 0 high: 3 2 2 2 0.628
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr18:10550613-10550633 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr18:10550613-10550633 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr18:10550613-10550633 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Other Databases
Publication Methods Tissue Cell line Tested cell line Exp. condition
Kishore S et al. 2011 O N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Other UNKNOWN UNKNOWN miRTarBase
NCKAP1 hsa-miR-499a-3p low: 0 high: 3 2 3 2 -
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr2:182925246-182925272 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Balakrishnan I et al. 2014 IP Bone Marrow HS5 N/A N/A
Location Method Result Regulation Validation Type Source
chr2:182928807-182928828 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Balakrishnan I et al. 2014 IP Bone Marrow HS27A N/A N/A
Location Method Result Regulation Validation Type Source
chr2:182925246-182925272 HITS-CLIP POSITIVE DIRECT TarBase 7.0
HSP90AA1 hsa-miR-499a-3p low: 0 high: 3 2 3 2 -
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr14:102081350-102081376 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Balakrishnan I et al. 2014 IP Bone Marrow HS5 N/A N/A
Location Method Result Regulation Validation Type Source
chr14:102083923-102083944 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Balakrishnan I et al. 2014 IP Bone Marrow HS27A N/A N/A
Location Method Result Regulation Validation Type Source
chr14:102083923-102083944 HITS-CLIP POSITIVE DIRECT TarBase 7.0
MRPL51 hsa-miR-499a-3p low: 0 high: 3 1 1 1 -
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr12:6493206-6493227 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr12:6493206-6493227 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr12:6493206-6493227 HITS-CLIP POSITIVE DIRECT TarBase 7.0
EIF4G1 hsa-miR-499a-3p low: 0 high: 3 2 3 2 -
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:emetine
Location Method Result Regulation Validation Type Source
chr3:184334999-184335025 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Balakrishnan I et al. 2014 IP Bone Marrow HS5 N/A N/A
Location Method Result Regulation Validation Type Source
chr3:184334999-184335025 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Balakrishnan I et al. 2014 IP Bone Marrow HS27A N/A N/A
Location Method Result Regulation Validation Type Source
chr3:184334999-184335025 HITS-CLIP POSITIVE DIRECT TarBase 7.0
ATP13A3 hsa-miR-499a-3p low: 0 high: 3 2 2 2 0.589
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr3:194419946-194419971 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr3:194404351-194404374 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Balakrishnan I et al. 2014 IP Bone Marrow HS5 N/A N/A
Location Method Result Regulation Validation Type Source
chr3:194450193-194450215 HITS-CLIP POSITIVE DIRECT TarBase 7.0