Please cite:
Dimitra Karagkouni, Maria D. Paraskevopoulou, Serafeim Chatzopoulos, Ioannis S. Vlachos, Spyros Tastsoglou, Ilias Kanellos, Dimitris Papadimitriou, Ioannis Kavakiotis, Sofia Maniou, Giorgos Skoufos, Thanasis Vergoulis, Theodore Dalamagas, Artemis G. Hatzigeorgiou; DIANA-TarBase v8: a decade-long collection of experimentally supported miRNA–gene interactions, Nucleic Acids Research, gkx1141, https://doi.org/10.1093/nar/gkx1141
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hsa-miR-5001-3p


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Filters
Interactions: 173, Experiments: (low: , high: , unknown: ) Cell lines: , Tissues: , Publications:
Gene name miRNA name Experiments
throughput
Publications Cell lines Tissues Pred. Score
EDN1 hsa-miR-5001-3p low: 0 high: 1 2 2 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Skalsky Rebecca L. et al. 2012 IP N/A LCLBACD1 N/A N/A
Location Method Result Regulation Validation Type Source
chr6:12296652-12296668 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Other Databases
Publication Methods Tissue Cell line Tested cell line Exp. condition
Whisnant Adam W et al. 2013 O N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Other UNKNOWN UNKNOWN miRTarBase
ZNF263 hsa-miR-5001-3p low: 0 high: 1 1 1 1 0.575
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Skalsky Rebecca L. et al. 2012 IP N/A LCLBACD1 N/A N/A
Location Method Result Regulation Validation Type Source
chr16:3300006-3300022 PAR-CLIP POSITIVE DIRECT TarBase 7.0
ERP27 hsa-miR-5001-3p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Skalsky Rebecca L. et al. 2012 IP N/A LCLBACD1 N/A N/A
Location Method Result Regulation Validation Type Source
chr12:14938443-14938462 PAR-CLIP POSITIVE DIRECT TarBase 7.0
DUSP2 hsa-miR-5001-3p low: 0 high: 1 1 1 1 0.578
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Skalsky Rebecca L. et al. 2012 IP N/A LCLBACD1 N/A N/A
Location Method Result Regulation Validation Type Source
chr2:96143552-96143569 PAR-CLIP POSITIVE DIRECT TarBase 7.0
CMBL hsa-miR-5001-3p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Skalsky Rebecca L. et al. 2012 IP N/A LCLBACD1 N/A N/A
Location Method Result Regulation Validation Type Source
chr5:10280560-10280570 PAR-CLIP POSITIVE DIRECT TarBase 7.0
C1orf56 hsa-miR-5001-3p low: 0 high: 0 3 1 1 -
Other Databases
Publication Methods Tissue Cell line Tested cell line Exp. condition
Hafner M. et al. 2010 O N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Other UNKNOWN UNKNOWN miRTarBase
Inna Lipchina et al. 2011 O N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Other UNKNOWN UNKNOWN miRTarBase
Karginov FV et al. 2013 O N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Other UNKNOWN UNKNOWN miRTarBase
C20orf144 hsa-miR-5001-3p low: 0 high: 0 3 1 1 -
Other Databases
Publication Methods Tissue Cell line Tested cell line Exp. condition
Haecker Irina et al. 2012 O N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Other UNKNOWN UNKNOWN miRTarBase
Xue Y et al. 2013 O N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Other UNKNOWN UNKNOWN miRTarBase
Karginov FV et al. 2013 O N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Other UNKNOWN UNKNOWN miRTarBase
PRMT7 hsa-miR-5001-3p low: 0 high: 0 2 1 1 -
Other Databases
Publication Methods Tissue Cell line Tested cell line Exp. condition
Hafner M. et al. 2010 O N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Other UNKNOWN UNKNOWN miRTarBase
Inna Lipchina et al. 2011 O N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Other UNKNOWN UNKNOWN miRTarBase
FAM179A hsa-miR-5001-3p low: 0 high: 0 2 1 1 -
Other Databases
Publication Methods Tissue Cell line Tested cell line Exp. condition
Skalsky Rebecca L. et al. 2012 O N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Other UNKNOWN UNKNOWN miRTarBase
Majoros William H. et al. 2014 O N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Other UNKNOWN UNKNOWN miRTarBase
ORAI2 hsa-miR-5001-3p low: 0 high: 0 2 1 1 -
Other Databases
Publication Methods Tissue Cell line Tested cell line Exp. condition
Xue Y et al. 2013 O N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Other UNKNOWN UNKNOWN miRTarBase
Karginov FV et al. 2013 O N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Other UNKNOWN UNKNOWN miRTarBase
PCDHA6 hsa-miR-5001-3p low: 0 high: 0 2 1 1 -
Other Databases
Publication Methods Tissue Cell line Tested cell line Exp. condition
Chi Sung Wook et al. 2010 O N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Other UNKNOWN UNKNOWN miRTarBase
Karginov FV et al. 2013 O N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Other UNKNOWN UNKNOWN miRTarBase
PITPNM3 hsa-miR-5001-3p low: 0 high: 0 2 1 1 -
Other Databases
Publication Methods Tissue Cell line Tested cell line Exp. condition
Chi Sung Wook et al. 2010 O N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Other UNKNOWN UNKNOWN miRTarBase
Karginov FV et al. 2013 O N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Other UNKNOWN UNKNOWN miRTarBase
C19orf47 hsa-miR-5001-3p low: 0 high: 0 2 1 1 -
Other Databases
Publication Methods Tissue Cell line Tested cell line Exp. condition
Hafner M. et al. 2010 O N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Other UNKNOWN UNKNOWN miRTarBase
Kishore S et al. 2011 O N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Other UNKNOWN UNKNOWN miRTarBase
MDGA1 hsa-miR-5001-3p low: 0 high: 0 2 1 1 -
Other Databases
Publication Methods Tissue Cell line Tested cell line Exp. condition
Xue Y et al. 2013 O N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Other UNKNOWN UNKNOWN miRTarBase
Karginov FV et al. 2013 O N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Other UNKNOWN UNKNOWN miRTarBase
DTWD2 hsa-miR-5001-3p low: 0 high: 0 1 1 1 -
Other Databases
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 O N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Other UNKNOWN UNKNOWN miRTarBase
HPSE hsa-miR-5001-3p low: 0 high: 0 1 1 1 -
Other Databases
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 O N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Other UNKNOWN UNKNOWN miRTarBase
NXPH3 hsa-miR-5001-3p low: 0 high: 0 1 1 1 -
Other Databases
Publication Methods Tissue Cell line Tested cell line Exp. condition
Chi Sung Wook et al. 2010 O N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Other UNKNOWN UNKNOWN miRTarBase
SLFN13 hsa-miR-5001-3p low: 0 high: 0 1 1 1 -
Other Databases
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 O N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Other UNKNOWN UNKNOWN miRTarBase
ALDOA hsa-miR-5001-3p low: 0 high: 0 1 1 1 -
Other Databases
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 O N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Other UNKNOWN UNKNOWN miRTarBase
BHMT2 hsa-miR-5001-3p low: 0 high: 0 1 1 1 -
Other Databases
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 O N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Other UNKNOWN UNKNOWN miRTarBase