Please cite:
Dimitra Karagkouni, Maria D. Paraskevopoulou, Serafeim Chatzopoulos, Ioannis S. Vlachos, Spyros Tastsoglou, Ilias Kanellos, Dimitris Papadimitriou, Ioannis Kavakiotis, Sofia Maniou, Giorgos Skoufos, Thanasis Vergoulis, Theodore Dalamagas, Artemis G. Hatzigeorgiou; DIANA-TarBase v8: a decade-long collection of experimentally supported miRNA–gene interactions, Nucleic Acids Research, gkx1141, https://doi.org/10.1093/nar/gkx1141
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hsa-miR-5582-3p


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Interactions: 184, Experiments: (low: , high: , unknown: ) Cell lines: , Tissues: , Publications:
Gene name miRNA name Experiments
throughput
Publications Cell lines Tissues Pred. Score
ZNF711 hsa-miR-5582-3p low: 0 high: 6 1 1 1 0.979
High-throughput experiments (6 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chrX:85273030-85273045 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chrX:85273030-85273045 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chrX:85270695-85270718 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chrX:85270695-85270718 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chrX:85270695-85270718 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chrX:85270695-85270718 HITS-CLIP POSITIVE DIRECT TarBase 7.0
SNAPC1 hsa-miR-5582-3p low: 0 high: 5 1 1 1 0.790
High-throughput experiments (5 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr14:61795437-61795456 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr14:61795437-61795456 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chr14:61795437-61795456 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr14:61795437-61795456 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr14:61795437-61795456 HITS-CLIP POSITIVE DIRECT TarBase 7.0
ZNF106 hsa-miR-5582-3p low: 0 high: 4 1 1 1 0.873
High-throughput experiments (4 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr15:42413941-42413962 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr15:42413941-42413962 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chr15:42413941-42413962 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:emetine
Location Method Result Regulation Validation Type Source
chr15:42413941-42413962 HITS-CLIP POSITIVE DIRECT TarBase 7.0
HAND1 hsa-miR-5582-3p low: 0 high: 4 1 1 1 0.786
High-throughput experiments (4 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chr5:154475134-154475155 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr5:154475134-154475155 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr5:154475134-154475155 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr5:154475134-154475155 HITS-CLIP POSITIVE DIRECT TarBase 7.0
AGPAT4 hsa-miR-5582-3p low: 0 high: 2 1 1 1 -
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chr6:161130423-161130444 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr6:161130423-161130444 HITS-CLIP POSITIVE DIRECT TarBase 7.0
MSMO1 hsa-miR-5582-3p low: 0 high: 2 1 1 1 0.861
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr4:165342194-165342218 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr4:165342194-165342218 HITS-CLIP POSITIVE DIRECT TarBase 7.0
DICER1 hsa-miR-5582-3p low: 0 high: 2 1 1 1 -
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr14:95087977-95088003 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr14:95087977-95088003 HITS-CLIP POSITIVE DIRECT TarBase 7.0
EIF4G2 hsa-miR-5582-3p low: 0 high: 2 1 1 1 0.616
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr11:10804985-10805004 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:emetine
Location Method Result Regulation Validation Type Source
chr11:10804903-10804927 HITS-CLIP POSITIVE DIRECT TarBase 7.0
CCND2 hsa-miR-5582-3p low: 0 high: 2 1 1 1 0.570
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr12:4300632-4300654 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr12:4300632-4300654 HITS-CLIP POSITIVE DIRECT TarBase 7.0
TMBIM6 hsa-miR-5582-3p low: 0 high: 2 1 1 1 0.495
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr12:49764036-49764056 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr12:49764036-49764056 HITS-CLIP POSITIVE DIRECT TarBase 7.0
SAMD1 hsa-miR-5582-3p low: 0 high: 2 1 1 1 -
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr19:14087878-14087892 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr19:14087878-14087892 HITS-CLIP POSITIVE DIRECT TarBase 7.0
BACH1 hsa-miR-5582-3p low: 0 high: 2 1 1 1 -
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr21:29345180-29345207 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr21:29345180-29345207 HITS-CLIP POSITIVE DIRECT TarBase 7.0
FRS2 hsa-miR-5582-3p low: 0 high: 2 1 1 1 0.986
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chr12:69574977-69574996 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr12:69574977-69574996 HITS-CLIP POSITIVE DIRECT TarBase 7.0
DCP2 hsa-miR-5582-3p low: 0 high: 2 1 1 1 0.893
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr5:113017455-113017476 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr5:112985897-112985918 HITS-CLIP POSITIVE DIRECT TarBase 7.0
KCTD12 hsa-miR-5582-3p low: 0 high: 2 1 1 1 0.942
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr13:76884680-76884702 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr13:76884680-76884702 HITS-CLIP POSITIVE DIRECT TarBase 7.0
PABPC1 hsa-miR-5582-3p low: 0 high: 2 1 1 1 -
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr8:100712391-100712412 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr8:100702997-100703021 HITS-CLIP POSITIVE DIRECT TarBase 7.0
KATNAL1 hsa-miR-5582-3p low: 0 high: 2 1 1 1 0.863
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr13:30280157-30280181 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr13:30280157-30280181 HITS-CLIP POSITIVE DIRECT TarBase 7.0
ACTR2 hsa-miR-5582-3p low: 0 high: 2 1 1 1 0.856
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr2:65270324-65270341 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr2:65268836-65268864 HITS-CLIP POSITIVE DIRECT TarBase 7.0
RMND5A hsa-miR-5582-3p low: 0 high: 2 1 1 1 0.959
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr2:86774145-86774169 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr2:86773789-86773817 HITS-CLIP POSITIVE DIRECT TarBase 7.0
C21orf91 hsa-miR-5582-3p low: 0 high: 2 1 1 1 0.850
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr21:17789453-17789475 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr21:17789453-17789475 HITS-CLIP POSITIVE DIRECT TarBase 7.0