Please cite:
Dimitra Karagkouni, Maria D. Paraskevopoulou, Serafeim Chatzopoulos, Ioannis S. Vlachos, Spyros Tastsoglou, Ilias Kanellos, Dimitris Papadimitriou, Ioannis Kavakiotis, Sofia Maniou, Giorgos Skoufos, Thanasis Vergoulis, Theodore Dalamagas, Artemis G. Hatzigeorgiou; DIANA-TarBase v8: a decade-long collection of experimentally supported miRNA–gene interactions, Nucleic Acids Research, gkx1141, https://doi.org/10.1093/nar/gkx1141
Bulk download:
We have updated the bulk download module, which simplifies the download process! Please find the new online form by following this link

hsa-miR-642a-5p


Loading... Please wait, this might take a few seconds...



Filters
Clear all
Interactions: 290, Experiments: (low: , high: , unknown: ) Cell lines: , Tissues: , Publications:
Gene name miRNA name Experiments
throughput
Publications Cell lines Tissues Pred. Score
PPP1R12C hsa-miR-642a-5p low: 0 high: 8 1 1 1 -
High-throughput experiments (8 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr19:55091025-55091052 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr19:55091025-55091052 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr19:55091025-55091052 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr19:55091025-55091052 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr19:55091025-55091052 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr19:55091025-55091052 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr19:55091025-55091052 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr19:55091025-55091052 HITS-CLIP POSITIVE DIRECT TarBase 7.0
NR1H2 hsa-miR-642a-5p low: 0 high: 8 1 1 1 0.456
High-throughput experiments (8 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr19:50382870-50382893 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr19:50382870-50382893 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr19:50382870-50382893 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr19:50382870-50382893 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr19:50382870-50382893 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr19:50382870-50382893 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr19:50382870-50382893 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr19:50382870-50382893 HITS-CLIP POSITIVE DIRECT TarBase 7.0
RNF103 hsa-miR-642a-5p low: 0 high: 7 1 1 1 -
High-throughput experiments (7 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr2:86604816-86604838 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr2:86604816-86604838 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr2:86604816-86604838 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:emetine
Location Method Result Regulation Validation Type Source
chr2:86604816-86604838 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr2:86604816-86604838 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr2:86604816-86604838 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr2:86604816-86604838 HITS-CLIP POSITIVE DIRECT TarBase 7.0
RP11-111M22.2 hsa-miR-642a-5p low: 0 high: 6 1 1 1 -
High-throughput experiments (6 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr11:76381649-76381673 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr11:76381649-76381673 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr11:76381649-76381673 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr11:76381649-76381673 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr11:76381649-76381673 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr11:76381649-76381673 HITS-CLIP POSITIVE DIRECT TarBase 7.0
SNX17 hsa-miR-642a-5p low: 0 high: 5 1 1 1 -
High-throughput experiments (5 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr2:27376959-27376977 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr2:27376959-27376977 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr2:27376959-27376977 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr2:27376959-27376977 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr2:27376959-27376977 HITS-CLIP POSITIVE DIRECT TarBase 7.0
NEK3 hsa-miR-642a-5p low: 0 high: 4 1 1 1 -
High-throughput experiments (4 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr13:52132768-52132796 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr13:52132768-52132796 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr13:52132768-52132796 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr13:52132768-52132796 HITS-CLIP POSITIVE DIRECT TarBase 7.0
DLL1 hsa-miR-642a-5p low: 0 high: 4 1 1 1 -
High-throughput experiments (4 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr6:170282782-170282799 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr6:170282782-170282799 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr6:170282782-170282799 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr6:170282782-170282799 HITS-CLIP POSITIVE DIRECT TarBase 7.0
PABPN1 hsa-miR-642a-5p low: 0 high: 3 1 1 1 -
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr14:23325447-23325463 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:emetine
Location Method Result Regulation Validation Type Source
chr14:23321808-23321828 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr14:23321808-23321828 HITS-CLIP POSITIVE DIRECT TarBase 7.0
SFPQ hsa-miR-642a-5p low: 0 high: 3 1 1 1 -
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chr1:35184497-35184519 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr1:35184497-35184519 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr1:35184497-35184519 HITS-CLIP POSITIVE DIRECT TarBase 7.0
BTG3 hsa-miR-642a-5p low: 0 high: 3 1 1 1 -
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr21:17594257-17594278 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chr21:17594257-17594278 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr21:17594257-17594278 HITS-CLIP POSITIVE DIRECT TarBase 7.0
NSD1 hsa-miR-642a-5p low: 0 high: 3 1 3 1 -
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Skalsky Rebecca L. et al. 2012 IP N/A LCLBACD1 N/A N/A
Location Method Result Regulation Validation Type Source
chr5:177298123-177298143 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Skalsky Rebecca L. et al. 2012 IP N/A LCL35 N/A N/A
Location Method Result Regulation Validation Type Source
chr5:177298123-177298143 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Skalsky Rebecca L. et al. 2012 IP N/A EF3DAGO2 N/A N/A
Location Method Result Regulation Validation Type Source
chr5:177298123-177298143 PAR-CLIP POSITIVE DIRECT TarBase 7.0
KIF5B hsa-miR-642a-5p low: 0 high: 3 1 1 1 -
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr10:32011304-32011331 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr10:32011304-32011331 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr10:32011304-32011331 HITS-CLIP POSITIVE DIRECT TarBase 7.0
FBXL19 hsa-miR-642a-5p low: 0 high: 3 1 1 1 -
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr16:30924289-30924315 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr16:30930130-30930137 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr16:30924289-30924315 HITS-CLIP POSITIVE DIRECT TarBase 7.0
TRIM28 hsa-miR-642a-5p low: 0 high: 3 1 1 1 -
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr19:58548127-58548147 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr19:58548127-58548147 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr19:58548127-58548147 HITS-CLIP POSITIVE DIRECT TarBase 7.0
ZDHHC5 hsa-miR-642a-5p low: 0 high: 3 1 1 1 0.856
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chr11:57700294-57700318 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr11:57700828-57700845 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr11:57700294-57700318 HITS-CLIP POSITIVE DIRECT TarBase 7.0
IRGQ hsa-miR-642a-5p low: 0 high: 3 1 1 1 -
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr19:43595016-43595042 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr19:43595016-43595042 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr19:43595016-43595042 HITS-CLIP POSITIVE DIRECT TarBase 7.0
NHLRC3 hsa-miR-642a-5p low: 0 high: 3 1 1 1 -
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chr13:39048581-39048606 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr13:39048158-39048172 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr13:39048158-39048172 HITS-CLIP POSITIVE DIRECT TarBase 7.0
VPS13D hsa-miR-642a-5p low: 0 high: 2 1 1 1 -
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chr1:12362810-12362834 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr1:12362810-12362834 HITS-CLIP POSITIVE DIRECT TarBase 7.0
PUM2 hsa-miR-642a-5p low: 0 high: 2 1 1 1 -
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chr2:20297600-20297628 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr2:20297600-20297628 HITS-CLIP POSITIVE DIRECT TarBase 7.0
ZFYVE26 hsa-miR-642a-5p low: 0 high: 2 1 1 1 -
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr14:67785873-67785891 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chr14:67747287-67747306 HITS-CLIP POSITIVE DIRECT TarBase 7.0