Please cite:
Dimitra Karagkouni, Maria D. Paraskevopoulou, Serafeim Chatzopoulos, Ioannis S. Vlachos, Spyros Tastsoglou, Ilias Kanellos, Dimitris Papadimitriou, Ioannis Kavakiotis, Sofia Maniou, Giorgos Skoufos, Thanasis Vergoulis, Theodore Dalamagas, Artemis G. Hatzigeorgiou; DIANA-TarBase v8: a decade-long collection of experimentally supported miRNA–gene interactions, Nucleic Acids Research, gkx1141, https://doi.org/10.1093/nar/gkx1141
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hsa-miR-935


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Interactions: 184, Experiments: (low: , high: , unknown: ) Cell lines: , Tissues: , Publications:
Gene name miRNA name Experiments
throughput
Publications Cell lines Tissues Pred. Score
SHB hsa-miR-935 low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Helwak Aleksandra et al. 2013 IP Kidney FLPIN_TREX_293 N/A N/A
Location Method Result Regulation Validation Type Source
chr9:37955999-37956046 CLASH POSITIVE DIRECT TarBase 7.0
DHX8 hsa-miR-935 low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Helwak Aleksandra et al. 2013 IP Kidney FLPIN_TREX_293 N/A N/A
Location Method Result Regulation Validation Type Source
chr17:43492899-43492944 CLASH POSITIVE DIRECT TarBase 7.0
MTFMT hsa-miR-935 low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Helwak Aleksandra et al. 2013 IP Kidney FLPIN_TREX_293 N/A N/A
Location Method Result Regulation Validation Type Source
chr15:65026873-65026924 CLASH POSITIVE DIRECT TarBase 7.0
GNAI2 hsa-miR-935 low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Helwak Aleksandra et al. 2013 IP Kidney FLPIN_TREX_293 N/A N/A
Location Method Result Regulation Validation Type Source
chr3:50236241-50236291 CLASH POSITIVE DIRECT TarBase 7.0
CKB hsa-miR-935 low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Helwak Aleksandra et al. 2013 IP Kidney FLPIN_TREX_293 N/A N/A
Location Method Result Regulation Validation Type Source
chr14:103521338-103521381 CLASH POSITIVE DIRECT TarBase 7.0
BCL2L1 hsa-miR-935 low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr20:31666052-31666081 Chimeric fragments POSITIVE DIRECT TarBase 8.0
DCP1A hsa-miR-935 low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr3:53286154-53286183 Chimeric fragments POSITIVE DIRECT TarBase 8.0
BCL2L11 hsa-miR-935 low: 0 high: 5 1 1 1 -
High-throughput experiments (5 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr2:111168382-111168388 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr2:111168382-111168388 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr2:111168382-111168388 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr2:111168382-111168388 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr2:111166727-111166747 HITS-CLIP POSITIVE DIRECT TarBase 7.0
CDC37L1 hsa-miR-935 low: 0 high: 5 1 1 1 0.678
High-throughput experiments (5 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr9:4706432-4706438 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr9:4706432-4706438 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr9:4706432-4706438 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr9:4706432-4706438 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr9:4706432-4706438 HITS-CLIP POSITIVE DIRECT TarBase 7.0
HSP90AA1 hsa-miR-935 low: 0 high: 4 1 1 1 -
High-throughput experiments (4 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr14:102081771-102081788 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr14:102081771-102081788 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr14:102081771-102081788 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr14:102081771-102081788 HITS-CLIP POSITIVE DIRECT TarBase 7.0
ZNF711 hsa-miR-935 low: 0 high: 4 1 1 1 0.532
High-throughput experiments (4 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chrX:85247002-85247029 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chrX:85247002-85247029 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chrX:85247002-85247029 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chrX:85247002-85247029 HITS-CLIP POSITIVE DIRECT TarBase 7.0
MKI67 hsa-miR-935 low: 0 high: 4 2 2 2 -
High-throughput experiments (4 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr10:128104218-128104244 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Balakrishnan I et al. 2014 IP Bone Marrow HS5 N/A N/A
Location Method Result Regulation Validation Type Source
chr10:128107879-128107904 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr10:128105313-128105339 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr10:128104218-128104244 HITS-CLIP POSITIVE DIRECT TarBase 7.0
SOX11 hsa-miR-935 low: 0 high: 4 1 1 1 0.678
High-throughput experiments (4 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr2:5695381-5695409 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr2:5695381-5695409 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr2:5695381-5695409 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr2:5695381-5695409 HITS-CLIP POSITIVE DIRECT TarBase 7.0
H3F3C hsa-miR-935 low: 0 high: 4 1 1 1 -
High-throughput experiments (4 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr12:31791425-31791450 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr12:31791425-31791450 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr12:31791425-31791450 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr12:31791425-31791450 HITS-CLIP POSITIVE DIRECT TarBase 7.0
CSDE1 hsa-miR-935 low: 0 high: 3 1 1 1 -
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr1:114736794-114736822 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr1:114736794-114736822 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr1:114717882-114717909 HITS-CLIP POSITIVE DIRECT TarBase 7.0
UBAP2L hsa-miR-935 low: 0 high: 3 1 1 1 -
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr1:154225137-154225165 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr1:154225137-154225165 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr1:154225137-154225165 HITS-CLIP POSITIVE DIRECT TarBase 7.0
AAED1 hsa-miR-935 low: 0 high: 3 1 1 1 -
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr9:96641729-96641735 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr9:96641729-96641735 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chr9:96641729-96641735 HITS-CLIP POSITIVE DIRECT TarBase 7.0
UHMK1 hsa-miR-935 low: 0 high: 3 1 1 1 -
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr1:162527901-162527918 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr1:162527901-162527918 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr1:162527901-162527918 HITS-CLIP POSITIVE DIRECT TarBase 7.0
GSK3B hsa-miR-935 low: 0 high: 2 2 2 2 0.657
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr3:119822006-119822029 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Balakrishnan I et al. 2014 IP Bone Marrow HS5 N/A N/A
Location Method Result Regulation Validation Type Source
chr3:119825057-119825078 HITS-CLIP POSITIVE DIRECT TarBase 7.0
TNPO1 hsa-miR-935 low: 0 high: 2 2 2 2 0.681
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chr5:72910358-72910384 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Balakrishnan I et al. 2014 IP Bone Marrow HS5 N/A N/A
Location Method Result Regulation Validation Type Source
chr5:72913029-72913057 HITS-CLIP POSITIVE DIRECT TarBase 7.0