Please cite:
Dimitra Karagkouni, Maria D. Paraskevopoulou, Serafeim Chatzopoulos, Ioannis S. Vlachos, Spyros Tastsoglou, Ilias Kanellos, Dimitris Papadimitriou, Ioannis Kavakiotis, Sofia Maniou, Giorgos Skoufos, Thanasis Vergoulis, Theodore Dalamagas, Artemis G. Hatzigeorgiou; DIANA-TarBase v8: a decade-long collection of experimentally supported miRNA–gene interactions, Nucleic Acids Research, gkx1141, https://doi.org/10.1093/nar/gkx1141
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hsa-miR-1287-5p


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Filters
Interactions: 325, Experiments: (low: , high: , unknown: ) Cell lines: , Tissues: , Publications:
Gene name miRNA name Experiments
throughput
Publications Cell lines Tissues Pred. Score
NOXA1 hsa-miR-1287-5p low: 0 high: 2 1 1 1 -
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr9:137426299-137426323 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr9:137426284-137426303 HITS-CLIP POSITIVE DIRECT TarBase 7.0
PRRC2A hsa-miR-1287-5p low: 0 high: 2 1 1 1 -
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr6:31629299-31629324 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr6:31622869-31622891 HITS-CLIP POSITIVE DIRECT TarBase 7.0
DVL2 hsa-miR-1287-5p low: 0 high: 1 1 1 1 0.512
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr17:7230155-7230181 HITS-CLIP POSITIVE DIRECT TarBase 7.0
UPF1 hsa-miR-1287-5p low: 0 high: 1 1 1 1 0.467
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr19:18868089-18868114 HITS-CLIP POSITIVE DIRECT TarBase 7.0
KMT2E hsa-miR-1287-5p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Eva Gottwein et al. 2011 IP Pleura BC1 N/A N/A
Location Method Result Regulation Validation Type Source
chr7:105112860-105112882 PAR-CLIP POSITIVE DIRECT TarBase 7.0
VTA1 hsa-miR-1287-5p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Eva Gottwein et al. 2011 IP Pleura BC3 N/A N/A
Location Method Result Regulation Validation Type Source
chr6:142204018-142204043 PAR-CLIP POSITIVE DIRECT TarBase 7.0
BAZ1B hsa-miR-1287-5p low: 0 high: 1 1 1 1 0.519
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Eva Gottwein et al. 2011 IP Pleura BC1 N/A N/A
Location Method Result Regulation Validation Type Source
chr7:73477685-73477710 PAR-CLIP POSITIVE DIRECT TarBase 7.0
SPRTN hsa-miR-1287-5p low: 0 high: 1 1 1 1 0.499
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Skalsky Rebecca L. et al. 2012 IP N/A EF3DAGO2 N/A N/A
Location Method Result Regulation Validation Type Source
chr1:231354860-231354888 PAR-CLIP POSITIVE DIRECT TarBase 7.0
RNF216 hsa-miR-1287-5p low: 0 high: 1 1 1 1 0.526
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr7:5620802-5620825 HITS-CLIP POSITIVE DIRECT TarBase 7.0
CEP68 hsa-miR-1287-5p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:emetine
Location Method Result Regulation Validation Type Source
chr2:65072101-65072128 HITS-CLIP POSITIVE DIRECT TarBase 7.0
VIM hsa-miR-1287-5p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Skalsky Rebecca L. et al. 2012 IP N/A EF3DAGO2 N/A N/A
Location Method Result Regulation Validation Type Source
chr10:17237518-17237545 PAR-CLIP POSITIVE DIRECT TarBase 7.0
ZZZ3 hsa-miR-1287-5p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Eva Gottwein et al. 2011 IP Pleura BC1 N/A N/A
Location Method Result Regulation Validation Type Source
chr1:77565649-77565674 PAR-CLIP POSITIVE DIRECT TarBase 7.0
INPP4A hsa-miR-1287-5p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:emetine
Location Method Result Regulation Validation Type Source
chr2:98592942-98592965 HITS-CLIP POSITIVE DIRECT TarBase 7.0
DSG2 hsa-miR-1287-5p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr18:31520906-31520932 HITS-CLIP POSITIVE DIRECT TarBase 7.0
SIKE1 hsa-miR-1287-5p low: 0 high: 1 1 1 1 0.460
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Eva Gottwein et al. 2011 IP Pleura BC1 N/A N/A
Location Method Result Regulation Validation Type Source
chr1:114773941-114773968 PAR-CLIP POSITIVE DIRECT TarBase 7.0
MED29 hsa-miR-1287-5p low: 0 high: 1 1 1 1 0.566
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr19:39397798-39397825 HITS-CLIP POSITIVE DIRECT TarBase 7.0
CHI3L2 hsa-miR-1287-5p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Skalsky Rebecca L. et al. 2012 IP N/A EF3DAGO2 N/A N/A
Location Method Result Regulation Validation Type Source
chr1:111230844-111230867 PAR-CLIP POSITIVE DIRECT TarBase 7.0
GNAI3 hsa-miR-1287-5p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr1:109598937-109598962 HITS-CLIP POSITIVE DIRECT TarBase 7.0
PKN2 hsa-miR-1287-5p low: 0 high: 1 1 1 1 0.611
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Eva Gottwein et al. 2011 IP Pleura BC1 N/A N/A
Location Method Result Regulation Validation Type Source
chr1:88834495-88834518 PAR-CLIP POSITIVE DIRECT TarBase 7.0
SMARCD1 hsa-miR-1287-5p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr12:50086287-50086312 HITS-CLIP POSITIVE DIRECT TarBase 7.0