Please cite:
Dimitra Karagkouni, Maria D. Paraskevopoulou, Serafeim Chatzopoulos, Ioannis S. Vlachos, Spyros Tastsoglou, Ilias Kanellos, Dimitris Papadimitriou, Ioannis Kavakiotis, Sofia Maniou, Giorgos Skoufos, Thanasis Vergoulis, Theodore Dalamagas, Artemis G. Hatzigeorgiou; DIANA-TarBase v8: a decade-long collection of experimentally supported miRNA–gene interactions, Nucleic Acids Research, gkx1141, https://doi.org/10.1093/nar/gkx1141
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hsa-miR-1287-5p


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Filters
Interactions: 325, Experiments: (low: , high: , unknown: ) Cell lines: , Tissues: , Publications:
Gene name miRNA name Experiments
throughput
Publications Cell lines Tissues Pred. Score
LAPTM4A hsa-miR-1287-5p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr2:20035018-20035043 HITS-CLIP POSITIVE DIRECT TarBase 7.0
FAM50A hsa-miR-1287-5p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:emetine
Location Method Result Regulation Validation Type Source
chrX:154444466-154444492 HITS-CLIP POSITIVE DIRECT TarBase 7.0
FAM50A hsa-miR-1287-5p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chrX:154446453-154446475 HITS-CLIP POSITIVE DIRECT TarBase 7.0
LPHN1 hsa-miR-1287-5p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:emetine
Location Method Result Regulation Validation Type Source
chr19:14161353-14161375 HITS-CLIP POSITIVE DIRECT TarBase 7.0
PVR hsa-miR-1287-5p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr19:44663524-44663546 HITS-CLIP POSITIVE DIRECT TarBase 7.0
KDM5A hsa-miR-1287-5p low: 0 high: 1 1 1 1 0.670
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chr12:285106-285127 HITS-CLIP POSITIVE DIRECT TarBase 7.0
CLNS1A hsa-miR-1287-5p low: 0 high: 1 1 1 1 0.524
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Eva Gottwein et al. 2011 IP Pleura BC1 N/A N/A
Location Method Result Regulation Validation Type Source
chr11:77616272-77616295 PAR-CLIP POSITIVE DIRECT TarBase 7.0
ZZEF1 hsa-miR-1287-5p low: 0 high: 1 1 1 1 0.699
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chr17:4112660-4112688 HITS-CLIP POSITIVE DIRECT TarBase 7.0
BAZ2A hsa-miR-1287-5p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr12:56611973-56611998 HITS-CLIP POSITIVE DIRECT TarBase 7.0
DLGAP4 hsa-miR-1287-5p low: 0 high: 1 1 1 1 0.560
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:emetine
Location Method Result Regulation Validation Type Source
chr20:36527794-36527821 HITS-CLIP POSITIVE DIRECT TarBase 7.0
PHLPP1 hsa-miR-1287-5p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr18:62978663-62978688 HITS-CLIP POSITIVE DIRECT TarBase 7.0
XPO1 hsa-miR-1287-5p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr2:61537062-61537090 HITS-CLIP POSITIVE DIRECT TarBase 7.0
ZCCHC6 hsa-miR-1287-5p low: 0 high: 1 1 1 1 0.451
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Eva Gottwein et al. 2011 IP Pleura BC1 N/A N/A
Location Method Result Regulation Validation Type Source
chr9:86309497-86309525 PAR-CLIP POSITIVE DIRECT TarBase 7.0
SRRT hsa-miR-1287-5p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Eva Gottwein et al. 2011 IP Pleura BC3 N/A N/A
Location Method Result Regulation Validation Type Source
chr7:100886307-100886326 PAR-CLIP POSITIVE DIRECT TarBase 7.0
NUP188 hsa-miR-1287-5p low: 0 high: 1 1 1 1 0.673
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chr9:128983354-128983377 HITS-CLIP POSITIVE DIRECT TarBase 7.0
TBC1D2 hsa-miR-1287-5p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:emetine
Location Method Result Regulation Validation Type Source
chr9:98220855-98220877 HITS-CLIP POSITIVE DIRECT TarBase 7.0
HNRNPM hsa-miR-1287-5p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr19:8485808-8485833 HITS-CLIP POSITIVE DIRECT TarBase 7.0
PATZ1 hsa-miR-1287-5p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:emetine
Location Method Result Regulation Validation Type Source
chr22:31341300-31341328 HITS-CLIP POSITIVE DIRECT TarBase 7.0
GTPBP1 hsa-miR-1287-5p low: 0 high: 1 1 1 1 0.456
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr22:38729622-38729648 HITS-CLIP POSITIVE DIRECT TarBase 7.0
BRD1 hsa-miR-1287-5p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr22:49774328-49774354 HITS-CLIP POSITIVE DIRECT TarBase 7.0