Please cite:
Dimitra Karagkouni, Maria D. Paraskevopoulou, Serafeim Chatzopoulos, Ioannis S. Vlachos, Spyros Tastsoglou, Ilias Kanellos, Dimitris Papadimitriou, Ioannis Kavakiotis, Sofia Maniou, Giorgos Skoufos, Thanasis Vergoulis, Theodore Dalamagas, Artemis G. Hatzigeorgiou; DIANA-TarBase v8: a decade-long collection of experimentally supported miRNA–gene interactions, Nucleic Acids Research, gkx1141, https://doi.org/10.1093/nar/gkx1141
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hsa-miR-548h-5p


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Interactions: 203, Experiments: (low: , high: , unknown: ) Cell lines: , Tissues: , Publications:
Gene name miRNA name Experiments
throughput
Publications Cell lines Tissues Pred. Score
PAK2 hsa-miR-548h-5p low: 0 high: 1 1 1 1 0.720
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr3:196831609-196831633 HITS-CLIP POSITIVE DIRECT TarBase 7.0
GPR137C hsa-miR-548h-5p low: 0 high: 1 1 1 1 0.955
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chr14:52635797-52635824 HITS-CLIP POSITIVE DIRECT TarBase 7.0
ACBD3 hsa-miR-548h-5p low: 0 high: 1 1 1 1 0.854
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr1:226145601-226145619 HITS-CLIP POSITIVE DIRECT TarBase 7.0
MTA1 hsa-miR-548h-5p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr14:105470420-105470438 HITS-CLIP POSITIVE DIRECT TarBase 7.0
TOB2 hsa-miR-548h-5p low: 0 high: 1 1 1 1 0.537
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr22:41434096-41434121 HITS-CLIP POSITIVE DIRECT TarBase 7.0
XPOT hsa-miR-548h-5p low: 0 high: 1 1 1 1 0.810
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chr12:64433523-64433548 HITS-CLIP POSITIVE DIRECT TarBase 7.0
GPRIN3 hsa-miR-548h-5p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Haecker Irina et al. 2012 IP Bone Marrow BCBL1 N/A N/A
Location Method Result Regulation Validation Type Source
chr4:89236405-89236411 HITS-CLIP POSITIVE DIRECT TarBase 7.0
ZFP91 hsa-miR-548h-5p low: 0 high: 1 1 1 1 0.662
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Haecker Irina et al. 2012 IP Bone Marrow BCBL1 N/A N/A
Location Method Result Regulation Validation Type Source
chr11:58619575-58619599 HITS-CLIP POSITIVE DIRECT TarBase 7.0
CYP27C1 hsa-miR-548h-5p low: 0 high: 1 1 1 1 0.660
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Skalsky Rebecca L. et al. 2012 IP N/A LCLBAC N/A N/A
Location Method Result Regulation Validation Type Source
chr2:127185534-127185558 PAR-CLIP POSITIVE DIRECT TarBase 7.0
TMPPE hsa-miR-548h-5p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr3:33090826-33090841 HITS-CLIP POSITIVE DIRECT TarBase 7.0
ZNF292 hsa-miR-548h-5p low: 0 high: 1 1 1 1 0.913
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chr6:87263503-87263512 HITS-CLIP POSITIVE DIRECT TarBase 7.0
SF3B3 hsa-miR-548h-5p low: 0 high: 1 1 1 1 0.636
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr16:70572105-70572127 HITS-CLIP POSITIVE DIRECT TarBase 7.0
PRPF40A hsa-miR-548h-5p low: 0 high: 1 1 1 1 0.884
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chr2:152656009-152656036 HITS-CLIP POSITIVE DIRECT TarBase 7.0
NACA hsa-miR-548h-5p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr12:56712519-56712547 HITS-CLIP POSITIVE DIRECT TarBase 7.0
STRN3 hsa-miR-548h-5p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr14:30894040-30894061 HITS-CLIP POSITIVE DIRECT TarBase 7.0
RPF2 hsa-miR-548h-5p low: 0 high: 1 1 1 1 0.590
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Haecker Irina et al. 2012 IP Bone Marrow BCBL1 N/A N/A
Location Method Result Regulation Validation Type Source
chr6:111015823-111015845 HITS-CLIP POSITIVE DIRECT TarBase 7.0
C5orf42 hsa-miR-548h-5p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr5:37142292-37142308 HITS-CLIP POSITIVE DIRECT TarBase 7.0
MYO1C hsa-miR-548h-5p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr17:1465443-1465462 HITS-CLIP POSITIVE DIRECT TarBase 7.0
GFPT1 hsa-miR-548h-5p low: 0 high: 1 1 1 1 0.949
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Skalsky Rebecca L. et al. 2012 IP N/A LCLBAC N/A N/A
Location Method Result Regulation Validation Type Source
chr2:69319759-69319766 PAR-CLIP POSITIVE DIRECT TarBase 7.0
PRKDC hsa-miR-548h-5p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chr8:47933103-47933127 HITS-CLIP POSITIVE DIRECT TarBase 7.0