Please cite:
Dimitra Karagkouni, Maria D. Paraskevopoulou, Serafeim Chatzopoulos, Ioannis S. Vlachos, Spyros Tastsoglou, Ilias Kanellos, Dimitris Papadimitriou, Ioannis Kavakiotis, Sofia Maniou, Giorgos Skoufos, Thanasis Vergoulis, Theodore Dalamagas, Artemis G. Hatzigeorgiou; DIANA-TarBase v8: a decade-long collection of experimentally supported miRNA–gene interactions, Nucleic Acids Research, gkx1141, https://doi.org/10.1093/nar/gkx1141
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hsa-miR-548h-5p


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Interactions: 203, Experiments: (low: , high: , unknown: ) Cell lines: , Tissues: , Publications:
Gene name miRNA name Experiments
throughput
Publications Cell lines Tissues Pred. Score
ADAMTS1 hsa-miR-548h-5p low: 0 high: 2 1 1 1 0.940
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr21:26836291-26836312 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr21:26836291-26836312 HITS-CLIP POSITIVE DIRECT TarBase 7.0
PPP1R15B hsa-miR-548h-5p low: 0 high: 2 1 1 1 0.741
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr1:204405101-204405121 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr1:204405101-204405121 HITS-CLIP POSITIVE DIRECT TarBase 7.0
RALGAPB hsa-miR-548h-5p low: 0 high: 2 1 2 1 -
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Skalsky Rebecca L. et al. 2012 IP N/A LCLBAC N/A N/A
Location Method Result Regulation Validation Type Source
chr20:38576102-38576119 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Skalsky Rebecca L. et al. 2012 IP N/A LCLBACD1 N/A N/A
Location Method Result Regulation Validation Type Source
chr20:38576102-38576119 PAR-CLIP POSITIVE DIRECT TarBase 7.0
TMEM167A hsa-miR-548h-5p low: 0 high: 2 1 1 1 0.562
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr5:83056143-83056169 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr5:83056143-83056169 HITS-CLIP POSITIVE DIRECT TarBase 7.0
CBX6 hsa-miR-548h-5p low: 0 high: 2 1 1 1 0.470
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr22:38864261-38864288 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr22:38862404-38862432 HITS-CLIP POSITIVE DIRECT TarBase 7.0
BRWD1 hsa-miR-548h-5p low: 0 high: 2 1 2 1 0.991
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Skalsky Rebecca L. et al. 2012 IP N/A LCLBAC N/A N/A
Location Method Result Regulation Validation Type Source
chr21:39195940-39195962 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Skalsky Rebecca L. et al. 2012 IP N/A LCLBACD1 N/A N/A
Location Method Result Regulation Validation Type Source
chr21:39195940-39195962 PAR-CLIP POSITIVE DIRECT TarBase 7.0
DCP1A hsa-miR-548h-5p low: 0 high: 2 1 2 1 -
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Skalsky Rebecca L. et al. 2012 IP N/A LCLBAC N/A N/A
Location Method Result Regulation Validation Type Source
chr3:53286292-53286315 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Skalsky Rebecca L. et al. 2012 IP N/A LCLBACD1 N/A N/A
Location Method Result Regulation Validation Type Source
chr3:53286292-53286315 PAR-CLIP POSITIVE DIRECT TarBase 7.0
ZFYVE16 hsa-miR-548h-5p low: 0 high: 2 1 1 1 0.711
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr5:80478033-80478057 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr5:80478033-80478057 HITS-CLIP POSITIVE DIRECT TarBase 7.0
ZNF704 hsa-miR-548h-5p low: 0 high: 2 1 1 1 0.952
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr8:80665039-80665063 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr8:80665039-80665063 HITS-CLIP POSITIVE DIRECT TarBase 7.0
CAMTA1 hsa-miR-548h-5p low: 0 high: 2 1 1 1 0.654
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr1:7767297-7767310 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr1:7766688-7766710 HITS-CLIP POSITIVE DIRECT TarBase 7.0
ANKRD46 hsa-miR-548h-5p low: 0 high: 2 1 1 1 -
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr8:100521606-100521626 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr8:100521606-100521626 HITS-CLIP POSITIVE DIRECT TarBase 7.0
FOXN2 hsa-miR-548h-5p low: 0 high: 1 1 1 1 0.763
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Skalsky Rebecca L. et al. 2012 IP N/A LCLBAC N/A N/A
Location Method Result Regulation Validation Type Source
chr2:48378206-48378233 PAR-CLIP POSITIVE DIRECT TarBase 7.0
KLHL28 hsa-miR-548h-5p low: 0 high: 1 1 1 1 0.843
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Haecker Irina et al. 2012 IP Bone Marrow BCBL1 N/A N/A
Location Method Result Regulation Validation Type Source
chr14:44927777-44927798 HITS-CLIP POSITIVE DIRECT TarBase 7.0
LEPROT hsa-miR-548h-5p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr1:65435957-65435978 HITS-CLIP POSITIVE DIRECT TarBase 7.0
ENPP4 hsa-miR-548h-5p low: 0 high: 1 1 1 1 0.892
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Skalsky Rebecca L. et al. 2012 IP N/A LCLBACD1 N/A N/A
Location Method Result Regulation Validation Type Source
chr6:46144538-46144557 PAR-CLIP POSITIVE DIRECT TarBase 7.0
M6PR hsa-miR-548h-5p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:emetine
Location Method Result Regulation Validation Type Source
chr12:8941394-8941414 HITS-CLIP POSITIVE DIRECT TarBase 7.0
RBM6 hsa-miR-548h-5p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Haecker Irina et al. 2012 IP Bone Marrow BCBL1 N/A N/A
Location Method Result Regulation Validation Type Source
chr3:50077212-50077238 HITS-CLIP POSITIVE DIRECT TarBase 7.0
CSDE1 hsa-miR-548h-5p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr1:114717808-114717827 HITS-CLIP POSITIVE DIRECT TarBase 7.0
UBE3C hsa-miR-548h-5p low: 0 high: 1 1 1 1 0.685
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr7:157269021-157269044 HITS-CLIP POSITIVE DIRECT TarBase 7.0
REV3L hsa-miR-548h-5p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chr6:111375285-111375302 HITS-CLIP POSITIVE DIRECT TarBase 7.0