Please cite:
Dimitra Karagkouni, Maria D. Paraskevopoulou, Serafeim Chatzopoulos, Ioannis S. Vlachos, Spyros Tastsoglou, Ilias Kanellos, Dimitris Papadimitriou, Ioannis Kavakiotis, Sofia Maniou, Giorgos Skoufos, Thanasis Vergoulis, Theodore Dalamagas, Artemis G. Hatzigeorgiou; DIANA-TarBase v8: a decade-long collection of experimentally supported miRNA–gene interactions, Nucleic Acids Research, gkx1141, https://doi.org/10.1093/nar/gkx1141
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hsa-miR-548h-5p


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Interactions: 203, Experiments: (low: , high: , unknown: ) Cell lines: , Tissues: , Publications:
Gene name miRNA name Experiments
throughput
Publications Cell lines Tissues Pred. Score
TMOD3 hsa-miR-548h-5p low: 0 high: 1 1 1 1 0.583
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr15:51910611-51910633 HITS-CLIP POSITIVE DIRECT TarBase 7.0
NUP54 hsa-miR-548h-5p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Skalsky Rebecca L. et al. 2012 IP N/A LCLBAC N/A N/A
Location Method Result Regulation Validation Type Source
chr4:76115137-76115156 PAR-CLIP POSITIVE DIRECT TarBase 7.0
BMP2K hsa-miR-548h-5p low: 0 high: 1 1 1 1 0.918
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Skalsky Rebecca L. et al. 2012 IP N/A LCLBACD1 N/A N/A
Location Method Result Regulation Validation Type Source
chr4:78912868-78912889 PAR-CLIP POSITIVE DIRECT TarBase 7.0
LRIG3 hsa-miR-548h-5p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr12:58872521-58872547 HITS-CLIP POSITIVE DIRECT TarBase 7.0
TMEM19 hsa-miR-548h-5p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr12:71703284-71703303 HITS-CLIP POSITIVE DIRECT TarBase 7.0
MFAP1 hsa-miR-548h-5p low: 0 high: 1 1 1 1 0.498
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Haecker Irina et al. 2012 IP Bone Marrow BCBL1 N/A N/A
Location Method Result Regulation Validation Type Source
chr15:43804629-43804655 HITS-CLIP POSITIVE DIRECT TarBase 7.0
ANP32A hsa-miR-548h-5p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Skalsky Rebecca L. et al. 2012 IP N/A LCLBACD1 N/A N/A
Location Method Result Regulation Validation Type Source
chr15:68779848-68779862 PAR-CLIP POSITIVE DIRECT TarBase 7.0
CMTM3 hsa-miR-548h-5p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr16:66609452-66609473 HITS-CLIP POSITIVE DIRECT TarBase 7.0
C17orf80 hsa-miR-548h-5p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Skalsky Rebecca L. et al. 2012 IP N/A LCLBAC N/A N/A
Location Method Result Regulation Validation Type Source
chr17:73235856-73235877 PAR-CLIP POSITIVE DIRECT TarBase 7.0
SERBP1 hsa-miR-548h-5p low: 0 high: 1 1 1 1 0.985
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Skalsky Rebecca L. et al. 2012 IP N/A LCLBAC N/A N/A
Location Method Result Regulation Validation Type Source
chr1:67408040-67408061 PAR-CLIP POSITIVE DIRECT TarBase 7.0
PIP5K1A hsa-miR-548h-5p low: 0 high: 1 1 1 1 0.516
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chr1:151198626-151198653 HITS-CLIP POSITIVE DIRECT TarBase 7.0
DEGS1 hsa-miR-548h-5p low: 0 high: 1 1 1 1 0.505
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr1:224190082-224190104 HITS-CLIP POSITIVE DIRECT TarBase 7.0
RHOB hsa-miR-548h-5p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chr2:20449016-20449036 HITS-CLIP POSITIVE DIRECT TarBase 7.0
LRIG1 hsa-miR-548h-5p low: 0 high: 1 1 1 1 0.748
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr3:66379317-66379345 HITS-CLIP POSITIVE DIRECT TarBase 7.0
MARCH6 hsa-miR-548h-5p low: 0 high: 1 1 1 1 0.844
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr5:10434041-10434066 HITS-CLIP POSITIVE DIRECT TarBase 7.0
G3BP1 hsa-miR-548h-5p low: 0 high: 1 1 1 1 0.989
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr5:151805158-151805184 HITS-CLIP POSITIVE DIRECT TarBase 7.0
FBXO10 hsa-miR-548h-5p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Haecker Irina et al. 2012 IP Bone Marrow BCBL1 N/A N/A
Location Method Result Regulation Validation Type Source
chr9:37510956-37510976 HITS-CLIP POSITIVE DIRECT TarBase 7.0
STOM hsa-miR-548h-5p low: 0 high: 1 1 1 1 0.555
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Skalsky Rebecca L. et al. 2012 IP N/A LCLBAC N/A N/A
Location Method Result Regulation Validation Type Source
chr9:121340282-121340305 PAR-CLIP POSITIVE DIRECT TarBase 7.0
ATM hsa-miR-548h-5p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Skalsky Rebecca L. et al. 2012 IP N/A LCLBACD1 N/A N/A
Location Method Result Regulation Validation Type Source
chr11:108369030-108369047 PAR-CLIP POSITIVE DIRECT TarBase 7.0
ADAM17 hsa-miR-548h-5p low: 0 high: 1 1 1 1 0.600
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Skalsky Rebecca L. et al. 2012 IP N/A LCLBAC N/A N/A
Location Method Result Regulation Validation Type Source
chr2:9488589-9488607 PAR-CLIP POSITIVE DIRECT TarBase 7.0