Please cite:
Dimitra Karagkouni, Maria D. Paraskevopoulou, Serafeim Chatzopoulos, Ioannis S. Vlachos, Spyros Tastsoglou, Ilias Kanellos, Dimitris Papadimitriou, Ioannis Kavakiotis, Sofia Maniou, Giorgos Skoufos, Thanasis Vergoulis, Theodore Dalamagas, Artemis G. Hatzigeorgiou; DIANA-TarBase v8: a decade-long collection of experimentally supported miRNA–gene interactions, Nucleic Acids Research, gkx1141, https://doi.org/10.1093/nar/gkx1141
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hsa-miR-548h-5p


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Interactions: 203, Experiments: (low: , high: , unknown: ) Cell lines: , Tissues: , Publications:
Gene name miRNA name Experiments
throughput
Publications Cell lines Tissues Pred. Score
BICD1 hsa-miR-548h-5p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr12:32338264-32338279 HITS-CLIP POSITIVE DIRECT TarBase 7.0
RABGAP1L hsa-miR-548h-5p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Haecker Irina et al. 2012 IP Bone Marrow BCBL1 N/A N/A
Location Method Result Regulation Validation Type Source
chr1:174637416-174637440 HITS-CLIP POSITIVE DIRECT TarBase 7.0
UHMK1 hsa-miR-548h-5p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr1:162529464-162529489 HITS-CLIP POSITIVE DIRECT TarBase 7.0
PFKM hsa-miR-548h-5p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Haecker Irina et al. 2012 IP Bone Marrow BCBL1 N/A N/A
Location Method Result Regulation Validation Type Source
chr12:48146026-48146053 HITS-CLIP POSITIVE DIRECT TarBase 7.0
HNRNPU hsa-miR-548h-5p low: 0 high: 1 1 1 1 0.667
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:emetine
Location Method Result Regulation Validation Type Source
chr1:244853456-244853474 HITS-CLIP POSITIVE DIRECT TarBase 7.0
TBCEL hsa-miR-548h-5p low: 0 high: 1 1 1 1 0.894
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Skalsky Rebecca L. et al. 2012 IP N/A LCLBAC N/A N/A
Location Method Result Regulation Validation Type Source
chr11:121087979-121087987 PAR-CLIP POSITIVE DIRECT TarBase 7.0
CDK19 hsa-miR-548h-5p low: 0 high: 1 1 1 1 0.704
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr6:110613296-110613313 HITS-CLIP POSITIVE DIRECT TarBase 7.0
BACH1 hsa-miR-548h-5p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Skalsky Rebecca L. et al. 2012 IP N/A LCLBAC N/A N/A
Location Method Result Regulation Validation Type Source
chr21:29345064-29345082 PAR-CLIP POSITIVE DIRECT TarBase 7.0
FBRS hsa-miR-548h-5p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr16:30658593-30658621 HITS-CLIP POSITIVE DIRECT TarBase 7.0
FCHO2 hsa-miR-548h-5p low: 0 high: 1 1 1 1 0.735
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr5:73090377-73090399 HITS-CLIP POSITIVE DIRECT TarBase 7.0
BTG2 hsa-miR-548h-5p low: 0 high: 1 1 1 1 0.841
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Haecker Irina et al. 2012 IP Bone Marrow BCBL1 N/A N/A
Location Method Result Regulation Validation Type Source
chr1:203309553-203309580 HITS-CLIP POSITIVE DIRECT TarBase 7.0
SLC30A7 hsa-miR-548h-5p low: 0 high: 1 1 1 1 0.962
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr1:100978728-100978752 HITS-CLIP POSITIVE DIRECT TarBase 7.0
RNF149 hsa-miR-548h-5p low: 0 high: 1 1 1 1 0.890
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr2:101277063-101277089 HITS-CLIP POSITIVE DIRECT TarBase 7.0
HIPK1 hsa-miR-548h-5p low: 0 high: 1 1 1 1 0.892
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr1:113973962-113973986 HITS-CLIP POSITIVE DIRECT TarBase 7.0
LRRC58 hsa-miR-548h-5p low: 0 high: 1 1 1 1 0.958
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr3:120330312-120330329 HITS-CLIP POSITIVE DIRECT TarBase 7.0
RYBP hsa-miR-548h-5p low: 0 high: 1 1 1 1 0.959
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chr3:72376809-72376837 HITS-CLIP POSITIVE DIRECT TarBase 7.0
U2SURP hsa-miR-548h-5p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chr3:143060499-143060514 HITS-CLIP POSITIVE DIRECT TarBase 7.0
FYCO1 hsa-miR-548h-5p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr3:45918002-45918023 HITS-CLIP POSITIVE DIRECT TarBase 7.0
MB21D1 hsa-miR-548h-5p low: 0 high: 1 1 1 1 0.742
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Skalsky Rebecca L. et al. 2012 IP N/A LCLBACD1 N/A N/A
Location Method Result Regulation Validation Type Source
chr6:73424051-73424058 PAR-CLIP POSITIVE DIRECT TarBase 7.0
REEP3 hsa-miR-548h-5p low: 0 high: 1 1 1 1 0.955
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chr10:63620976-63620997 HITS-CLIP POSITIVE DIRECT TarBase 7.0