Please cite:
Dimitra Karagkouni, Maria D. Paraskevopoulou, Serafeim Chatzopoulos, Ioannis S. Vlachos, Spyros Tastsoglou, Ilias Kanellos, Dimitris Papadimitriou, Ioannis Kavakiotis, Sofia Maniou, Giorgos Skoufos, Thanasis Vergoulis, Theodore Dalamagas, Artemis G. Hatzigeorgiou; DIANA-TarBase v8: a decade-long collection of experimentally supported miRNA–gene interactions, Nucleic Acids Research, gkx1141, https://doi.org/10.1093/nar/gkx1141
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hsa-miR-548h-5p


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Interactions: 203, Experiments: (low: , high: , unknown: ) Cell lines: , Tissues: , Publications:
Gene name miRNA name Experiments
throughput
Publications Cell lines Tissues Pred. Score
E2F7 hsa-miR-548h-5p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Skalsky Rebecca L. et al. 2012 IP N/A LCLBAC N/A N/A
Location Method Result Regulation Validation Type Source
chr12:77022357-77022363 PAR-CLIP POSITIVE DIRECT TarBase 7.0
RPL27A hsa-miR-548h-5p low: 0 high: 1 1 1 1 0.519
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:emetine
Location Method Result Regulation Validation Type Source
chr11:8687525-8687546 HITS-CLIP POSITIVE DIRECT TarBase 7.0
WEE1 hsa-miR-548h-5p low: 0 high: 1 1 1 1 0.822
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chr11:9588663-9588689 HITS-CLIP POSITIVE DIRECT TarBase 7.0
TMC8 hsa-miR-548h-5p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Haecker Irina et al. 2012 IP Bone Marrow BCBL1 N/A N/A
Location Method Result Regulation Validation Type Source
chr17:78142942-78142968 HITS-CLIP POSITIVE DIRECT TarBase 7.0
DDIT4 hsa-miR-548h-5p low: 0 high: 1 1 1 1 0.941
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Haecker Irina et al. 2012 IP Bone Marrow BCBL1 N/A N/A
Location Method Result Regulation Validation Type Source
chr10:72275985-72276012 HITS-CLIP POSITIVE DIRECT TarBase 7.0
PCMTD1 hsa-miR-548h-5p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr8:51861028-51861050 HITS-CLIP POSITIVE DIRECT TarBase 7.0
FSTL5 hsa-miR-548h-5p low: 0 high: 1 1 1 1 0.727
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chr4:162163632-162163656 HITS-CLIP POSITIVE DIRECT TarBase 7.0
HNRNPF hsa-miR-548h-5p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Haecker Irina et al. 2012 IP Bone Marrow BCBL1 N/A N/A
Location Method Result Regulation Validation Type Source
chr10:43386028-43386046 HITS-CLIP POSITIVE DIRECT TarBase 7.0
ARL6IP1 hsa-miR-548h-5p low: 0 high: 1 1 1 1 0.915
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Skalsky Rebecca L. et al. 2012 IP N/A LCLBACD1 N/A N/A
Location Method Result Regulation Validation Type Source
chr16:18791744-18791770 PAR-CLIP POSITIVE DIRECT TarBase 7.0
DNAJC24 hsa-miR-548h-5p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr11:31431895-31431913 HITS-CLIP POSITIVE DIRECT TarBase 7.0
PTEN hsa-miR-548h-5p low: 0 high: 1 1 1 1 0.813
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Skalsky Rebecca L. et al. 2012 IP N/A LCLBAC N/A N/A
Location Method Result Regulation Validation Type Source
chr10:87967883-87967903 PAR-CLIP POSITIVE DIRECT TarBase 7.0
ZMAT3 hsa-miR-548h-5p low: 0 high: 1 1 1 1 0.728
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Haecker Irina et al. 2012 IP Bone Marrow BCBL1 N/A N/A
Location Method Result Regulation Validation Type Source
chr3:179020320-179020342 HITS-CLIP POSITIVE DIRECT TarBase 7.0
PHF8 hsa-miR-548h-5p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:emetine
Location Method Result Regulation Validation Type Source
chrX:53943108-53943129 HITS-CLIP POSITIVE DIRECT TarBase 7.0
KDM2A hsa-miR-548h-5p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chr11:67256369-67256390 HITS-CLIP POSITIVE DIRECT TarBase 7.0
TRIB1 hsa-miR-548h-5p low: 0 high: 1 1 1 1 0.574
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Haecker Irina et al. 2012 IP Bone Marrow BCBL1 N/A N/A
Location Method Result Regulation Validation Type Source
chr8:125437304-125437319 HITS-CLIP POSITIVE DIRECT TarBase 7.0
CXorf23 hsa-miR-548h-5p low: 0 high: 1 1 1 1 0.819
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Skalsky Rebecca L. et al. 2012 IP N/A LCLBAC N/A N/A
Location Method Result Regulation Validation Type Source
chrX:19953862-19953878 PAR-CLIP POSITIVE DIRECT TarBase 7.0
PHC3 hsa-miR-548h-5p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chr3:170094116-170094137 HITS-CLIP POSITIVE DIRECT TarBase 7.0
KIAA1551 hsa-miR-548h-5p low: 0 high: 1 1 1 1 0.904
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Skalsky Rebecca L. et al. 2012 IP N/A LCLBACD1 N/A N/A
Location Method Result Regulation Validation Type Source
chr12:31993043-31993070 PAR-CLIP POSITIVE DIRECT TarBase 7.0
CCNE2 hsa-miR-548h-5p low: 0 high: 1 1 1 1 0.546
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr8:94888019-94888044 HITS-CLIP POSITIVE DIRECT TarBase 7.0
SPTY2D1 hsa-miR-548h-5p low: 0 high: 1 1 1 1 0.780
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Haecker Irina et al. 2012 IP Bone Marrow BCBL1 N/A N/A
Location Method Result Regulation Validation Type Source
chr11:18606472-18606493 HITS-CLIP POSITIVE DIRECT TarBase 7.0