Please cite:
Dimitra Karagkouni, Maria D. Paraskevopoulou, Serafeim Chatzopoulos, Ioannis S. Vlachos, Spyros Tastsoglou, Ilias Kanellos, Dimitris Papadimitriou, Ioannis Kavakiotis, Sofia Maniou, Giorgos Skoufos, Thanasis Vergoulis, Theodore Dalamagas, Artemis G. Hatzigeorgiou; DIANA-TarBase v8: a decade-long collection of experimentally supported miRNA–gene interactions, Nucleic Acids Research, gkx1141, https://doi.org/10.1093/nar/gkx1141
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hsa-miR-548h-5p


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Filters
Interactions: 383, Experiments: (low: , high: , unknown: ) Cell lines: , Tissues: , Publications:
Gene name miRNA name Experiments
throughput
Publications Cell lines Tissues Pred. Score
ZC3H7B hsa-miR-548h-5p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chr22:41359329-41359356 HITS-CLIP POSITIVE DIRECT TarBase 7.0
DAAM1 hsa-miR-548h-5p low: 0 high: 1 1 1 1 0.888
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr14:59371134-59371159 HITS-CLIP POSITIVE DIRECT TarBase 7.0
RNMT hsa-miR-548h-5p low: 0 high: 1 1 1 1 0.660
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:emetine
Location Method Result Regulation Validation Type Source
chr18:13762769-13762791 HITS-CLIP POSITIVE DIRECT TarBase 7.0
KATNAL1 hsa-miR-548h-5p low: 0 high: 1 1 1 1 0.938
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chr13:30202704-30202718 HITS-CLIP POSITIVE DIRECT TarBase 7.0
INTS6 hsa-miR-548h-5p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:emetine
Location Method Result Regulation Validation Type Source
chr13:51436513-51436539 HITS-CLIP POSITIVE DIRECT TarBase 7.0
RNASEH2A hsa-miR-548h-5p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chr19:12813616-12813644 HITS-CLIP POSITIVE DIRECT TarBase 7.0
OAZ1 hsa-miR-548h-5p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Haecker Irina et al. 2012 IP Bone Marrow BCBL1 N/A N/A
Location Method Result Regulation Validation Type Source
chr19:2273307-2273330 HITS-CLIP POSITIVE DIRECT TarBase 7.0
HOXA3 hsa-miR-548h-5p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr7:27107529-27107550 HITS-CLIP POSITIVE DIRECT TarBase 7.0
PPP3CB hsa-miR-548h-5p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr10:73444234-73444257 HITS-CLIP POSITIVE DIRECT TarBase 7.0
NUFIP2 hsa-miR-548h-5p low: 0 high: 1 1 1 1 0.968
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr17:29262983-29263004 HITS-CLIP POSITIVE DIRECT TarBase 7.0
GAB1 hsa-miR-548h-5p low: 0 high: 1 1 1 1 0.849
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Haecker Irina et al. 2012 IP Bone Marrow BCBL1 N/A N/A
Location Method Result Regulation Validation Type Source
chr4:143469564-143469592 HITS-CLIP POSITIVE DIRECT TarBase 7.0
PPP6R3 hsa-miR-548h-5p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr11:68615071-68615094 HITS-CLIP POSITIVE DIRECT TarBase 7.0
OAS2 hsa-miR-548h-5p low: 0 high: 1 1 1 1 0.509
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Skalsky Rebecca L. et al. 2012 IP N/A LCLBACD1 N/A N/A
Location Method Result Regulation Validation Type Source
chr12:113011145-113011169 PAR-CLIP POSITIVE DIRECT TarBase 7.0
MDM1 hsa-miR-548h-5p low: 0 high: 1 1 1 1 0.596
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr12:68325881-68325903 HITS-CLIP POSITIVE DIRECT TarBase 7.0
ASF1A hsa-miR-548h-5p low: 0 high: 1 1 1 1 0.847
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chr6:118905802-118905823 HITS-CLIP POSITIVE DIRECT TarBase 7.0
PHACTR2 hsa-miR-548h-5p low: 0 high: 1 1 1 1 0.659
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr6:143826377-143826404 HITS-CLIP POSITIVE DIRECT TarBase 7.0
TMEM30A hsa-miR-548h-5p low: 0 high: 1 1 1 1 0.461
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chr6:75253992-75254014 HITS-CLIP POSITIVE DIRECT TarBase 7.0
FRMD4B hsa-miR-548h-5p low: 0 high: 1 1 1 1 0.769
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr3:69170541-69170567 HITS-CLIP POSITIVE DIRECT TarBase 7.0
ODC1 hsa-miR-548h-5p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr2:10444145-10444168 HITS-CLIP POSITIVE DIRECT TarBase 7.0
PLEKHB2 hsa-miR-548h-5p low: 0 high: 1 1 1 1 0.566
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Haecker Irina et al. 2012 IP Bone Marrow BCBL1 N/A N/A
Location Method Result Regulation Validation Type Source
chr2:131149357-131149370 HITS-CLIP POSITIVE DIRECT TarBase 7.0