Please cite:
Dimitra Karagkouni, Maria D. Paraskevopoulou, Serafeim Chatzopoulos, Ioannis S. Vlachos, Spyros Tastsoglou, Ilias Kanellos, Dimitris Papadimitriou, Ioannis Kavakiotis, Sofia Maniou, Giorgos Skoufos, Thanasis Vergoulis, Theodore Dalamagas, Artemis G. Hatzigeorgiou; DIANA-TarBase v8: a decade-long collection of experimentally supported miRNA–gene interactions, Nucleic Acids Research, gkx1141, https://doi.org/10.1093/nar/gkx1141
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hsa-miR-99b-5p


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Interactions: 565, Experiments: (low: , high: , unknown: ) Cell lines: , Tissues: , Publications:
Gene name miRNA name Experiments
throughput
Publications Cell lines Tissues Pred. Score
TXNDC17 hsa-miR-99b-5p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr17:6641161-6641184 Chimeric fragments POSITIVE DIRECT TarBase 8.0
ZNF331 hsa-miR-99b-5p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr19:53578635-53578659 Chimeric fragments POSITIVE DIRECT TarBase 8.0
TAF5L hsa-miR-99b-5p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr1:229593768-229593794 Chimeric fragments POSITIVE DIRECT TarBase 8.0
RPLP1 hsa-miR-99b-5p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr15:69452907-69452941 Chimeric fragments POSITIVE DIRECT TarBase 8.0
PMAIP1 hsa-miR-99b-5p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr18:59903807-59903835 Chimeric fragments POSITIVE DIRECT TarBase 8.0
FCHO2 hsa-miR-99b-5p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr5:73088201-73088235 Chimeric fragments POSITIVE DIRECT TarBase 8.0
OTUD4 hsa-miR-99b-5p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr4:145134335-145134362 Chimeric fragments POSITIVE DIRECT TarBase 8.0
ZNF367 hsa-miR-99b-5p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr9:96386502-96386532 Chimeric fragments POSITIVE DIRECT TarBase 8.0
SOCS6 hsa-miR-99b-5p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr18:70327497-70327530 Chimeric fragments POSITIVE DIRECT TarBase 8.0
SF3B3 hsa-miR-99b-5p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr16:70532601-70532622 Chimeric fragments POSITIVE DIRECT TarBase 8.0
FOXJ3 hsa-miR-99b-5p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr1:42178119-42178144 Chimeric fragments POSITIVE DIRECT TarBase 8.0
MT-CO3 hsa-miR-99b-5p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Moore M et al. 2015 IP Liver HUH7.5 N/A N/A
Location Method Result Regulation Validation Type Source
chrMT:9431-9506 CLEAR-CLIP POSITIVE DIRECT TarBase 8.0
HIST2H2BF hsa-miR-99b-5p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr1:149812191-149812217 Chimeric fragments POSITIVE DIRECT TarBase 8.0
TMEM200C hsa-miR-99b-5p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr18:5889596-5889618 Chimeric fragments POSITIVE DIRECT TarBase 8.0
CLDN11 hsa-miR-99b-5p low: 0 high: 7 2 3 2 0.946
High-throughput experiments (7 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Boudreau RL et al. 2014 IP Brain N/A N/A N/A
Location Method Result Regulation Validation Type Source
chr3:170433960-170433988 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr3:170433960-170433988 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr3:170433960-170433988 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr3:170433960-170433988 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr3:170433960-170433988 HITS-CLIP POSITIVE DIRECT TarBase 8.0
Balakrishnan I et al. 2014 IP Bone Marrow HS5 N/A N/A
Location Method Result Regulation Validation Type Source
chr3:170433960-170433988 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Balakrishnan I et al. 2014 IP Bone Marrow HS27A N/A N/A
Location Method Result Regulation Validation Type Source
chr3:170433960-170433988 HITS-CLIP POSITIVE DIRECT TarBase 7.0
NMT1 hsa-miR-99b-5p low: 0 high: 7 2 2 2 0.712
High-throughput experiments (7 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Boudreau RL et al. 2014 IP Brain N/A N/A N/A
Location Method Result Regulation Validation Type Source
chr17:45105925-45105948 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr17:45105925-45105948 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr17:45105925-45105948 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr17:45105925-45105948 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr17:45105925-45105948 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr17:45105925-45105948 HITS-CLIP POSITIVE DIRECT TarBase 8.0
Kishore S et al. 2011 IP Kidney HEK293 N/A mild MNase digestion
Location Method Result Regulation Validation Type Source
chr17:45105925-45105948 PAR-CLIP POSITIVE DIRECT TarBase 7.0
RCBTB1 hsa-miR-99b-5p low: 0 high: 5 2 2 2 -
High-throughput experiments (5 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Boudreau RL et al. 2014 IP Brain N/A N/A N/A
Location Method Result Regulation Validation Type Source
chr13:49534046-49534070 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr13:49534046-49534070 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr13:49534046-49534070 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr13:49534046-49534070 HITS-CLIP POSITIVE DIRECT TarBase 8.0
Kameswaran V et al. 2014 IP Pancreas BETA Cells N/A N/A
Location Method Result Regulation Validation Type Source
chr13:49534046-49534070 HITS-CLIP POSITIVE DIRECT TarBase 7.0
AP1AR hsa-miR-99b-5p low: 0 high: 5 2 2 2 0.847
High-throughput experiments (5 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Boudreau RL et al. 2014 IP Brain N/A N/A N/A
Location Method Result Regulation Validation Type Source
chr4:112269274-112269292 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr4:112269274-112269292 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr4:112269274-112269292 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr4:112269274-112269292 HITS-CLIP POSITIVE DIRECT TarBase 8.0
Kameswaran V et al. 2014 IP Pancreas BETA Cells N/A N/A
Location Method Result Regulation Validation Type Source
chr4:112269274-112269292 HITS-CLIP POSITIVE DIRECT TarBase 7.0
GALNT11 hsa-miR-99b-5p low: 0 high: 5 2 2 2 -
High-throughput experiments (5 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Boudreau RL et al. 2014 IP Brain N/A N/A N/A
Location Method Result Regulation Validation Type Source
chr7:152121871-152121899 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr7:152121871-152121899 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr7:152121871-152121899 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr7:152121871-152121899 HITS-CLIP POSITIVE DIRECT TarBase 8.0
Kameswaran V et al. 2014 IP Pancreas BETA Cells N/A N/A
Location Method Result Regulation Validation Type Source
chr7:152121871-152121899 HITS-CLIP POSITIVE DIRECT TarBase 7.0
BAZ2A hsa-miR-99b-5p low: 0 high: 4 3 4 3 -
High-throughput experiments (4 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Pillai MM et al. 2014 IP Mammary Gland MDAMB231 N/A N/A
Location Method Result Regulation Validation Type Source
chr12:56597042-56597050 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Pillai MM et al. 2014 IP Mammary Gland BT474 N/A N/A
Location Method Result Regulation Validation Type Source
chr12:56597042-56597050 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Kishore S et al. 2011 IP Kidney HEK293 N/A mild MNase digestion
Location Method Result Regulation Validation Type Source
chr12:56597042-56597050 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Balakrishnan I et al. 2014 IP Bone Marrow HS5 N/A N/A
Location Method Result Regulation Validation Type Source
chr12:56597042-56597050 HITS-CLIP POSITIVE DIRECT TarBase 7.0