Please cite:
Dimitra Karagkouni, Maria D. Paraskevopoulou, Serafeim Chatzopoulos, Ioannis S. Vlachos, Spyros Tastsoglou, Ilias Kanellos, Dimitris Papadimitriou, Ioannis Kavakiotis, Sofia Maniou, Giorgos Skoufos, Thanasis Vergoulis, Theodore Dalamagas, Artemis G. Hatzigeorgiou; DIANA-TarBase v8: a decade-long collection of experimentally supported miRNA–gene interactions, Nucleic Acids Research, gkx1141, https://doi.org/10.1093/nar/gkx1141
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hsa-miR-99b-5p


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Interactions: 565, Experiments: (low: , high: , unknown: ) Cell lines: , Tissues: , Publications:
Gene name miRNA name Experiments
throughput
Publications Cell lines Tissues Pred. Score
WDFY3 hsa-miR-99b-5p low: 0 high: 4 1 1 1 -
High-throughput experiments (4 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Boudreau RL et al. 2014 IP Brain N/A N/A N/A
Location Method Result Regulation Validation Type Source
chr4:84672710-84672735 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr4:84672710-84672735 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr4:84672710-84672735 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr4:84672710-84672735 HITS-CLIP POSITIVE DIRECT TarBase 8.0
MEF2D hsa-miR-99b-5p low: 0 high: 4 1 1 1 -
High-throughput experiments (4 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Boudreau RL et al. 2014 IP Brain N/A N/A N/A
Location Method Result Regulation Validation Type Source
chr1:156465663-156465686 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr1:156465663-156465686 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr1:156465663-156465686 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr1:156465663-156465686 HITS-CLIP POSITIVE DIRECT TarBase 8.0
IGF1R hsa-miR-99b-5p low: 0 high: 3 3 3 3 0.559
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Kishore S et al. 2011 IP Kidney HEK293 N/A mild MNase digestion
Location Method Result Regulation Validation Type Source
chr15:98963029-98963050 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Kameswaran V et al. 2014 IP Pancreas BETA Cells N/A N/A
Location Method Result Regulation Validation Type Source
chr15:98963029-98963050 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Balakrishnan I et al. 2014 IP Bone Marrow HMSC N/A N/A
Location Method Result Regulation Validation Type Source
chr15:98963029-98963050 HITS-CLIP POSITIVE DIRECT TarBase 7.0
RHEBL1 hsa-miR-99b-5p low: 0 high: 3 3 3 2 -
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Whisnant Adam W et al. 2013 IP Cervix TZMBL N/A shRNAs against HIV-1
Location Method Result Regulation Validation Type Source
chr12:49065016-49065041 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Kishore S et al. 2011 IP Kidney HEK293 N/A mild MNase digestion
Location Method Result Regulation Validation Type Source
chr12:49065016-49065041 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr12:49065016-49065041 HITS-CLIP POSITIVE DIRECT TarBase 7.0
LRRC8B hsa-miR-99b-5p low: 0 high: 3 2 3 2 0.589
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Kishore S et al. 2011 IP Kidney HEK293 N/A mild MNase digestion
Location Method Result Regulation Validation Type Source
chr1:89594387-89594408 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Balakrishnan I et al. 2014 IP Bone Marrow HS5 N/A N/A
Location Method Result Regulation Validation Type Source
chr1:89594387-89594408 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Balakrishnan I et al. 2014 IP Bone Marrow HS27A N/A N/A
Location Method Result Regulation Validation Type Source
chr1:89594387-89594408 HITS-CLIP POSITIVE DIRECT TarBase 7.0
GMPS hsa-miR-99b-5p low: 0 high: 3 1 1 1 -
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Boudreau RL et al. 2014 IP Brain N/A N/A N/A
Location Method Result Regulation Validation Type Source
chr3:155937858-155937883 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr3:155937858-155937883 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr3:155937858-155937883 HITS-CLIP POSITIVE DIRECT TarBase 8.0
PLK1 hsa-miR-99b-5p low: 0 high: 3 3 3 2 -
High-throughput experiments (2 positive, 1 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
P et al. 2016 MA Peripheral Blood NK N/A 24hrs post-transfection, Overexpression
Location Method Result Regulation Validation Type Source
UNKNOWN Microarrays NEGATIVE INDIRECT TarBase 8.0
Kishore S et al. 2011 IP Kidney HEK293 N/A mild MNase digestion
Location Method Result Regulation Validation Type Source
chr16:23690216-23690244 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chr16:23690216-23690244 HITS-CLIP POSITIVE DIRECT TarBase 7.0
SPAG9 hsa-miR-99b-5p low: 0 high: 2 2 2 2 -
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr17:50970806-50970833 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Balakrishnan I et al. 2014 IP Bone Marrow HS5 N/A N/A
Location Method Result Regulation Validation Type Source
chr17:50970806-50970833 HITS-CLIP POSITIVE DIRECT TarBase 7.0
ATP2B1 hsa-miR-99b-5p low: 0 high: 2 2 2 2 -
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Whisnant Adam W et al. 2013 IP Cervix TZMBL N/A shRNAs against HIV-1
Location Method Result Regulation Validation Type Source
chr12:89588671-89588677 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Kishore S et al. 2011 IP Kidney HEK293 N/A mild MNase digestion
Location Method Result Regulation Validation Type Source
chr12:89588671-89588677 PAR-CLIP POSITIVE DIRECT TarBase 7.0
MLF2 hsa-miR-99b-5p low: 0 high: 2 2 2 2 -
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Whisnant Adam W et al. 2013 IP Cervix TZMBL N/A shRNAs against HIV-1
Location Method Result Regulation Validation Type Source
chr12:6750233-6750241 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Kishore S et al. 2011 IP Kidney HEK293 N/A mild MNase digestion
Location Method Result Regulation Validation Type Source
chr12:6750233-6750241 PAR-CLIP POSITIVE DIRECT TarBase 7.0
MCM4 hsa-miR-99b-5p low: 0 high: 2 2 1 1 -
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Kishore S et al. 2011 IP Kidney HEK293 N/A mild MNase digestion
Location Method Result Regulation Validation Type Source
chr8:47974956-47974964 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Hafner M. et al. 2010 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN PAR-CLIP POSITIVE DIRECT TarBase 6.0
HNRNPL hsa-miR-99b-5p low: 0 high: 2 2 2 2 -
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr19:38838555-38838576 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Balakrishnan I et al. 2014 IP Bone Marrow HMSC N/A N/A
Location Method Result Regulation Validation Type Source
chr19:38838543-38838562 HITS-CLIP POSITIVE DIRECT TarBase 7.0
IMPDH1 hsa-miR-99b-5p low: 0 high: 2 2 2 2 -
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Xue Y et al. 2013 IP Cervix HELA N/A Hela cells were treated with control shRNA.
Location Method Result Regulation Validation Type Source
chr7:128392902-128392921 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Kishore S et al. 2011 IP Kidney HEK293 N/A mild MNase digestion
Location Method Result Regulation Validation Type Source
chr7:128392902-128392921 PAR-CLIP POSITIVE DIRECT TarBase 7.0
LNPEP hsa-miR-99b-5p low: 0 high: 2 2 2 2 -
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Whisnant Adam W et al. 2013 IP Cervix TZMBL N/A shRNAs against HIV-1
Location Method Result Regulation Validation Type Source
chr5:97033351-97033373 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Kishore S et al. 2011 IP Kidney HEK293 N/A mild MNase digestion
Location Method Result Regulation Validation Type Source
chr5:97034042-97034063 PAR-CLIP POSITIVE DIRECT TarBase 7.0
SRSF7 hsa-miR-99b-5p low: 0 high: 2 1 1 1 -
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:emetine
Location Method Result Regulation Validation Type Source
chr2:38751334-38751362 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr2:38751334-38751362 HITS-CLIP POSITIVE DIRECT TarBase 7.0
RPS2 hsa-miR-99b-5p low: 0 high: 2 1 1 1 -
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr16:1962437-1962458 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr16:1962437-1962458 HITS-CLIP POSITIVE DIRECT TarBase 7.0
UGCG hsa-miR-99b-5p low: 0 high: 2 1 2 1 0.513
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Balakrishnan I et al. 2014 IP Bone Marrow HS5 N/A N/A
Location Method Result Regulation Validation Type Source
chr9:111933377-111933387 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Balakrishnan I et al. 2014 IP Bone Marrow HS27A N/A N/A
Location Method Result Regulation Validation Type Source
chr9:111933377-111933387 HITS-CLIP POSITIVE DIRECT TarBase 7.0
ZNF483 hsa-miR-99b-5p low: 0 high: 2 2 2 2 -
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Boudreau RL et al. 2014 IP Brain N/A N/A N/A
Location Method Result Regulation Validation Type Source
chr9:111543879-111543899 HITS-CLIP POSITIVE DIRECT TarBase 8.0
Kishore S et al. 2011 IP Kidney HEK293 N/A mild MNase digestion
Location Method Result Regulation Validation Type Source
chr9:111543879-111543899 PAR-CLIP POSITIVE DIRECT TarBase 7.0
ZADH2 hsa-miR-99b-5p low: 0 high: 2 2 2 2 -
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Kishore S et al. 2011 IP Kidney HEK293 N/A mild MNase digestion
Location Method Result Regulation Validation Type Source
chr18:75197406-75197417 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Eva Gottwein et al. 2011 IP Pleura BC1 N/A N/A
Location Method Result Regulation Validation Type Source
chr18:75197406-75197417 PAR-CLIP POSITIVE DIRECT TarBase 7.0
VCAN hsa-miR-99b-5p low: 0 high: 2 1 1 1 -
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Boudreau RL et al. 2014 IP Brain N/A N/A N/A
Location Method Result Regulation Validation Type Source
chr5:83512225-83512247 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr5:83512225-83512247 HITS-CLIP POSITIVE DIRECT TarBase 8.0