Please cite:
Dimitra Karagkouni, Maria D. Paraskevopoulou, Serafeim Chatzopoulos, Ioannis S. Vlachos, Spyros Tastsoglou, Ilias Kanellos, Dimitris Papadimitriou, Ioannis Kavakiotis, Sofia Maniou, Giorgos Skoufos, Thanasis Vergoulis, Theodore Dalamagas, Artemis G. Hatzigeorgiou; DIANA-TarBase v8: a decade-long collection of experimentally supported miRNA–gene interactions, Nucleic Acids Research, gkx1141, https://doi.org/10.1093/nar/gkx1141
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hsa-miR-34a-5p

ENSG00000112242

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Interactions: 2, Experiments: (low: , high: , unknown: ) Cell lines: , Tissues: , Publications:
Gene name miRNA name Experiments
throughput
Publications Cell lines Tissues Pred. Score
E2F3 hsa-miR-34a-5p low: 3 high: 11 8 8 7 1.000
Low-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Lin He et al. 2007 RP Brain SKNAS SKNAS N/A
Location Method Result Regulation Validation Type Source
chr6:20493144-20493167 Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
Lal Ashish et al. 2011 qP Bi Bone Marrow K562 N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN qPCR POSITIVE INDIRECT TarBase 7.0
UNKNOWN Biotin-qPCR POSITIVE INDIRECT TarBase 7.0
High-throughput experiments (11 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Xue Y et al. 2013 IP Cervix HELA N/A Hela cells were treated with control shRNA.
Location Method Result Regulation Validation Type Source
chr6:20493143-20493167 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Skalsky Rebecca L. et al. 2012 IP N/A EF3DAGO2 N/A N/A
Location Method Result Regulation Validation Type Source
chr6:20493143-20493167 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Sebastian Memczak et al. 2013 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr6:20493143-20493167 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Inna Lipchina et al. 2011 IP Embryo ESC N/A T1 RNase treatment
Location Method Result Regulation Validation Type Source
chr6:20493143-20493167 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Lal Ashish et al. 2011 Bi Bone Marrow K562 N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Biotin-Microarrays POSITIVE INDIRECT TarBase 7.0
Lal Ashish et al. 2011 MA Bi Intestine HCT116 N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Microarrays POSITIVE INDIRECT TarBase 7.0
UNKNOWN Biotin-Microarrays POSITIVE INDIRECT TarBase 7.0
Kishore S et al. 2011 IP Kidney HEK293 N/A mild MNase digestion
Location Method Result Regulation Validation Type Source
chr6:20493143-20493167 PAR-CLIP POSITIVE DIRECT TarBase 7.0
chr6:20493143-20493167 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr6:20493143-20493167 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr6:20493143-20493167 HITS-CLIP POSITIVE DIRECT TarBase 7.0
E2F3 hsa-miR-34a-5p low: 1 high: 0 1 1 1 -
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
C Welch et al. 2007 WB N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Western Blot POSITIVE INDIRECT TarBase 6.0