Please cite:
Dimitra Karagkouni, Maria D. Paraskevopoulou, Serafeim Chatzopoulos, Ioannis S. Vlachos, Spyros Tastsoglou, Ilias Kanellos, Dimitris Papadimitriou, Ioannis Kavakiotis, Sofia Maniou, Giorgos Skoufos, Thanasis Vergoulis, Theodore Dalamagas, Artemis G. Hatzigeorgiou; DIANA-TarBase v8: a decade-long collection of experimentally supported miRNA–gene interactions, Nucleic Acids Research, gkx1141, https://doi.org/10.1093/nar/gkx1141
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Interactions: 170, Experiments: (low: , high: , unknown: ) Cell lines: , Tissues: , Publications:
Gene name miRNA name Experiments
throughput
Publications Cell lines Tissues Pred. Score
MYC hsa-miR-4677-3p low: 1 high: 0 1 1 1 -
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Braun J et al. 2014 RP Kidney HEK293 HEK293 N/A
Location Method Result Regulation Validation Type Source
chr8:127740982-127741405 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
MYC hsa-miR-92a-3p low: 1 high: 0 1 1 1 -
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Braun J et al. 2014 RP Kidney HEK293 HEK293 N/A
Location Method Result Regulation Validation Type Source
chr8:127740982-127741405 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
MYC hsa-miR-940 low: 1 high: 0 1 1 1 -
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Braun J et al. 2014 RP Kidney HEK293 HEK293 N/A
Location Method Result Regulation Validation Type Source
chr8:127740982-127741405 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
HSPA5 hsa-miR-199a-5p low: 1 high: 0 1 1 1 0.679
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Dai B-H et al. 2013 RP Kidney HEK293 HEK293 N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
MYC hsa-let-7b-3p low: 1 high: 0 1 1 1 -
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Braun J et al. 2014 RP Kidney HEK293 HEK293 N/A
Location Method Result Regulation Validation Type Source
chr8:127740982-127741405 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
MYC hsa-miR-148b-5p low: 1 high: 0 1 1 1 -
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Braun J et al. 2014 RP Kidney HEK293 HEK293 N/A
Location Method Result Regulation Validation Type Source
chr8:127740982-127741405 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
E2F1 hsa-miR-149-3p low: 2 high: 0 1 1 1 0.468
Low-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Ruey-Jen Lin et al. 2010 RP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Luciferase Reporter Assay POSITIVE DIRECT TarBase 6.0
UNKNOWN Luciferase Reporter Assay POSITIVE DIRECT TarBase 6.0
AKT1 hsa-miR-149-3p low: 2 high: 0 1 1 1 -
Low-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Ruey-Jen Lin et al. 2010 RP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Luciferase Reporter Assay POSITIVE DIRECT TarBase 6.0
UNKNOWN Luciferase Reporter Assay POSITIVE DIRECT TarBase 6.0
CNTFR hsa-miR-708-5p low: 2 high: 0 1 1 1 -
Low-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Li X et al. 2013 RP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr9:34551665-34551684 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
chr9:34551493-34551916 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
GJA1 hsa-miR-1-3p low: 1 high: 0 1 1 1 -
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Baofeng Yang et al. 2007 RP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Luciferase Reporter Assay POSITIVE DIRECT TarBase 6.0
CTCF hsa-miR-221-3p low: 1 high: 0 1 1 1 -
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Lupini Laura et al. 2013 RP Kidney HEK293 HEK293 N/A
Location Method Result Regulation Validation Type Source
chr16:67638186-67639117 Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
SPARC hsa-miR-29a-3p low: 1 high: 0 1 1 1 0.991
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Christopher L Plaisier et al. 2012 RP Kidney HEK293 HEK293 N/A
Location Method Result Regulation Validation Type Source
chr5:151663409-151663459 Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
WEE1 hsa-miR-221-3p low: 1 high: 0 1 1 1 0.492
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Lupini Laura et al. 2013 RP Kidney HEK293 HEK293 N/A
Location Method Result Regulation Validation Type Source
chr11:9589164-9589187 Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
ZEB1 hsa-miR-200b-3p low: 1 high: 0 1 1 1 -
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Philip A Gregory et al. 2008 RP Kidney HEK293 MDCK N/A
Location Method Result Regulation Validation Type Source
chr10:31527472-31529188 Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
GNG12 hsa-miR-708-5p low: 1 high: 0 1 1 1 0.698
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Li X et al. 2013 RP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr1:67704507-67705439 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
ANXA1 hsa-miR-221-3p low: 1 high: 0 1 1 1 -
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Lupini Laura et al. 2013 RP Kidney HEK293 HEK293 N/A
Location Method Result Regulation Validation Type Source
chr9:73170128-73170364 Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
RB1 hsa-miR-221-3p low: 1 high: 0 1 1 1 -
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Lupini Laura et al. 2013 RP Kidney HEK293 HEK293 N/A
Location Method Result Regulation Validation Type Source
chr13:48480093-48481082 Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
APAF1 hsa-miR-221-3p low: 1 high: 0 1 1 1 -
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Lupini Laura et al. 2013 RP Kidney HEK293 HEK293 N/A
Location Method Result Regulation Validation Type Source
chr12:98732439-98733160 Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
NNAT hsa-miR-708-5p low: 1 high: 0 1 1 1 0.998
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Li X et al. 2013 RP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr20:37522767-37523613 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
MAPRE1 hsa-miR-92a-3p low: 1 high: 0 1 1 1 -
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Helwak Aleksandra et al. 2013 RP Kidney HEK293 HEK293 N/A
Location Method Result Regulation Validation Type Source
chr20:32849794-32849811 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0