Please cite:
Dimitra Karagkouni, Maria D. Paraskevopoulou, Serafeim Chatzopoulos, Ioannis S. Vlachos, Spyros Tastsoglou, Ilias Kanellos, Dimitris Papadimitriou, Ioannis Kavakiotis, Sofia Maniou, Giorgos Skoufos, Thanasis Vergoulis, Theodore Dalamagas, Artemis G. Hatzigeorgiou; DIANA-TarBase v8: a decade-long collection of experimentally supported miRNA–gene interactions, Nucleic Acids Research, gkx1141, https://doi.org/10.1093/nar/gkx1141
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Interactions: 170, Experiments: (low: , high: , unknown: ) Cell lines: , Tissues: , Publications:
Gene name miRNA name Experiments
throughput
Publications Cell lines Tissues Pred. Score
COL3A1 hsa-miR-29b-3p low: 1 high: 0 1 1 1 1.000
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Christopher L Plaisier et al. 2012 RP Kidney HEK293 HEK293 N/A
Location Method Result Regulation Validation Type Source
chr2:189011837-189012702 Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
CDKN1A hsa-miR-17-5p low: 1 high: 0 1 1 1 -
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Wu S et al. 2010 RP Kidney HEK293 HEK293 N/A
Location Method Result Regulation Validation Type Source
chr6:36685816-36687315 Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
PTBP1 hsa-miR-124-3p low: 1 high: 0 1 1 1 0.955
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Kang K. et al. 2013 RP Kidney HEK293 HEK293 N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
IRAK1 hsa-miR-146a-5p low: 1 high: 0 1 1 1 1.000
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Crone Stephanie Geisler et al. 2012 RP Kidney HEK293 HEK293 N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
BCL2 hsa-miR-15a-5p low: 1 high: 0 1 1 1 -
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Ragan Chikako et al. 2009 RP Kidney HEK293 HEK293 N/A
Location Method Result Regulation Validation Type Source
chr18:63126086-63126113 Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
COL4A1 hsa-miR-29b-3p low: 1 high: 0 1 1 1 -
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Christopher L Plaisier et al. 2012 RP Kidney HEK293 HEK293 N/A
Location Method Result Regulation Validation Type Source
chr13:110149015-110150335 Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
SPARC hsa-miR-29c-3p low: 1 high: 0 1 1 1 -
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Christopher L Plaisier et al. 2012 RP Kidney HEK293 HEK293 N/A
Location Method Result Regulation Validation Type Source
chr5:151663409-151663459 Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
CDKN1A hsa-miR-20a-5p low: 1 high: 0 1 1 1 -
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Wu S et al. 2010 RP Kidney HEK293 HEK293 N/A
Location Method Result Regulation Validation Type Source
chr6:36685816-36687315 Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
HCN4 hsa-miR-1-3p low: 2 high: 0 1 1 1 -
Low-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Xiaobin Luo et al. 2008 RP Kidney HEK293 HEK293 N/A
Location Method Result Regulation Validation Type Source
chr15:73614781-73614802 Luciferase Reporter Assay POSITIVE DIRECT TarBase 6.0
chr15:73322440-73322461 Luciferase Reporter Assay POSITIVE DIRECT TarBase 6.0
FXN hsa-miR-124-3p low: 1 high: 0 1 1 1 -
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Simon et al. 2013 RP Kidney HEK293 HEK293 N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
TOM1 hsa-miR-126-3p low: 1 high: 0 1 1 1 -
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Irene K Oglesby et al. 2010 RP Kidney HEK293 HEK293 N/A
Location Method Result Regulation Validation Type Source
chr22:35347265-35347964 Luciferase Reporter Assay POSITIVE DIRECT TarBase 6.0
ATF6 hsa-miR-199a-5p low: 2 high: 0 2 1 1 -
Low-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Hassan T. et al. 2014 RP Kidney HEK293 HEK293 N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
Dai B-H et al. 2013 RP Kidney HEK293 HEK293 N/A
Location Method Result Regulation Validation Type Source
chr1:161958474-161958810 Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
HIPK1 hsa-miR-92a-3p low: 1 high: 0 1 1 1 0.783
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Wu Q. et al. 2013 RP Kidney HEK293 HEK293 N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
OSBPL8 hsa-miR-92a-3p low: 1 high: 0 1 1 1 -
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Helwak Aleksandra et al. 2013 RP Kidney HEK293 HEK293 N/A
Location Method Result Regulation Validation Type Source
chr12:76355826-76355848 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
RFFL hsa-miR-92a-3p low: 1 high: 0 1 1 1 0.490
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Helwak Aleksandra et al. 2013 RP Kidney HEK293 HEK293 N/A
Location Method Result Regulation Validation Type Source
chr17:35008713-35009472 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
OSBPL2 hsa-miR-92a-3p low: 1 high: 0 1 1 1 -
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Helwak Aleksandra et al. 2013 RP Kidney HEK293 HEK293 N/A
Location Method Result Regulation Validation Type Source
chr20:62294348-62294367 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
HIPK1 hsa-miR-19b-3p low: 1 high: 0 1 1 1 0.909
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Wu Q. et al. 2013 RP Kidney HEK293 HEK293 N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
COL3A1 hsa-miR-29a-3p low: 1 high: 0 1 1 1 1.000
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Christopher L Plaisier et al. 2012 RP Kidney HEK293 HEK293 N/A
Location Method Result Regulation Validation Type Source
chr2:189011837-189012702 Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
COL3A1 hsa-miR-29c-3p low: 1 high: 0 1 1 1 1.000
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Christopher L Plaisier et al. 2012 RP Kidney HEK293 HEK293 N/A
Location Method Result Regulation Validation Type Source
chr2:189011837-189012702 Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
CDKN1A hsa-miR-20b-5p low: 1 high: 0 1 1 1 -
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Wu S et al. 2010 RP Kidney HEK293 HEK293 N/A
Location Method Result Regulation Validation Type Source
chr6:36685816-36687315 Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0