Please cite:
Dimitra Karagkouni, Maria D. Paraskevopoulou, Serafeim Chatzopoulos, Ioannis S. Vlachos, Spyros Tastsoglou, Ilias Kanellos, Dimitris Papadimitriou, Ioannis Kavakiotis, Sofia Maniou, Giorgos Skoufos, Thanasis Vergoulis, Theodore Dalamagas, Artemis G. Hatzigeorgiou; DIANA-TarBase v8: a decade-long collection of experimentally supported miRNA–gene interactions, Nucleic Acids Research, gkx1141, https://doi.org/10.1093/nar/gkx1141
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hsa-let-7a-5p


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Interactions: 2787, Experiments: (low: , high: , unknown: ) Cell lines: , Tissues: , Publications:
Gene name miRNA name Experiments
throughput
Publications Cell lines Tissues Pred. Score
IGF1R hsa-let-7a-5p low: 6 high: 14 10 9 6 0.992
Low-throughput experiments (4 positive, 2 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Li-Na Wang et al. 2013 RP RP Prostate PC3 PC3 N/A
Location Method Result Regulation Validation Type Source
chr15:98960046-98960068 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
chr15:98957526-98957548 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
chr15:98964088-98964110 Luciferase Reporter Assay NEGATIVE DIRECT TarBase 7.0
Li-Na Wang et al. 2013 WB qP Prostate PC3 N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Western Blot POSITIVE INDIRECT TarBase 7.0
UNKNOWN qPCR NEGATIVE INDIRECT TarBase 7.0
Kim Seok-Jun et al. 2012 WB Mammary Gland Breast Cancer Cell Lines N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Western Blot POSITIVE INDIRECT TarBase 7.0
High-throughput experiments (14 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr15:98960037-98960068 Chimeric fragments POSITIVE DIRECT TarBase 8.0
Grosswendt S et al. 2014 IP Pleura B lymphocyte N/A N/A
Location Method Result Regulation Validation Type Source
chr15:98960039-98960068 Chimeric fragments POSITIVE DIRECT TarBase 8.0
Xue Y et al. 2013 IP Cervix HELA N/A Hela cells were treated with control shRNA.
Location Method Result Regulation Validation Type Source
chr15:98960051-98960068 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Whisnant Adam W et al. 2013 IP Cervix TZMBL N/A N/A
Location Method Result Regulation Validation Type Source
chr15:98960051-98960068 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Whisnant Adam W et al. 2013 IP Cervix TZMBL N/A shRNAs against HIV-1
Location Method Result Regulation Validation Type Source
chr15:98960218-98960235 PAR-CLIP POSITIVE DIRECT TarBase 7.0
chr15:98960051-98960068 PAR-CLIP POSITIVE DIRECT TarBase 7.0
chr15:98707664-98707681 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Skalsky Rebecca L. et al. 2012 IP N/A EF3DAGO2 N/A N/A
Location Method Result Regulation Validation Type Source
chr15:98960051-98960068 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Ryan M. Spengler et al. 2013 MA Cervix HELA N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Microarrays POSITIVE INDIRECT TarBase 7.0
Sebastian Memczak et al. 2013 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr15:98960051-98960068 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Kishore S et al. 2011 IP Kidney HEK293 N/A mild MNase digestion
Location Method Result Regulation Validation Type Source
chr15:98960051-98960068 PAR-CLIP POSITIVE DIRECT TarBase 7.0
chr15:98960051-98960068 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Eva Gottwein et al. 2011 IP Pleura BC3 N/A N/A
Location Method Result Regulation Validation Type Source
chr15:98960051-98960068 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Eva Gottwein et al. 2011 IP Pleura BC1 N/A N/A
Location Method Result Regulation Validation Type Source
chr15:98960051-98960068 PAR-CLIP POSITIVE DIRECT TarBase 7.0
CDK6 hsa-let-7a-5p low: 6 high: 2 3 4 4 0.549
Low-throughput experiments (6 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Zhang Z et al. 2014 RP Bone SKES1 SKES1 N/A
Location Method Result Regulation Validation Type Source
chr7:92614037-92614822 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
Zhang Z et al. 2014 WB qP Bone SKES1 N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Western Blot POSITIVE INDIRECT TarBase 7.0
UNKNOWN qPCR POSITIVE INDIRECT TarBase 7.0
Zhang Z et al. 2014 WB qP Muscle A673 N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Western Blot POSITIVE INDIRECT TarBase 7.0
UNKNOWN qPCR POSITIVE INDIRECT TarBase 7.0
Zhang Z et al. 2014 RP Muscle A673 A673 N/A
Location Method Result Regulation Validation Type Source
chr7:92614037-92614822 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Xue Y et al. 2013 IP Cervix HELA N/A Hela cells were treated with control shRNA.
Location Method Result Regulation Validation Type Source
chr7:92614280-92614306 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Helwak Aleksandra et al. 2013 IP Kidney FLPIN_TREX_293 N/A N/A
Location Method Result Regulation Validation Type Source
chr7:92606426-92606479 CLASH POSITIVE DIRECT TarBase 7.0
HMGA2 hsa-let-7a-5p low: 3 high: 19 9 9 5 -
Low-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Palmieri D. et al. 2012 RP Bone Marrow MEG01 MEG01 N/A
Location Method Result Regulation Validation Type Source
chr12:65964469-65965862 Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
Meng-Yin Yang et al. 2014 WB Brain AASP+ N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Western Blot POSITIVE INDIRECT TarBase 7.0
Meng-Yin Yang et al. 2014 RP Brain AASP+ AASP+ N/A
Location Method Result Regulation Validation Type Source
chr12:65963319-65966261 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
High-throughput experiments (19 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr12:65965794-65965820 Chimeric fragments POSITIVE DIRECT TarBase 8.0
Whisnant Adam W et al. 2013 IP Cervix TZMBL N/A shRNAs against HIV-1
Location Method Result Regulation Validation Type Source
chr12:65964534-65964554 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Whisnant Adam W et al. 2013 IP Cervix TZMBL N/A N/A
Location Method Result Regulation Validation Type Source
chr12:65964534-65964554 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Sebastian Memczak et al. 2013 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr12:65964534-65964554 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Kishore S et al. 2011 IP Kidney HEK293 N/A mild MNase digestion
Location Method Result Regulation Validation Type Source
chr12:65965811-65965839 PAR-CLIP POSITIVE DIRECT TarBase 7.0
chr12:65964903-65964917 PAR-CLIP POSITIVE DIRECT TarBase 7.0
chr12:65964534-65964554 PAR-CLIP POSITIVE DIRECT TarBase 7.0
chr12:65964534-65964554 PAR-CLIP POSITIVE DIRECT TarBase 7.0
chr12:65964377-65964405 PAR-CLIP POSITIVE DIRECT TarBase 7.0
chr12:65963298-65963320 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr12:65964534-65964554 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr12:65964377-65964405 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Helwak Aleksandra et al. 2013 IP Kidney FLPIN_TREX_293 N/A N/A
Location Method Result Regulation Validation Type Source
chr12:65965792-65965857 CLASH POSITIVE DIRECT TarBase 7.0
Balakrishnan I et al. 2014 IP Umbilical Vein HUVEC N/A N/A
Location Method Result Regulation Validation Type Source
chr12:65965811-65965839 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Balakrishnan I et al. 2014 IP Bone Marrow HS5 N/A N/A
Location Method Result Regulation Validation Type Source
chr12:65965811-65965839 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr12:65964945-65964966 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr12:65964534-65964554 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr12:65964377-65964405 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Balakrishnan I et al. 2014 IP Bone Marrow HS27A N/A N/A
Location Method Result Regulation Validation Type Source
chr12:65964534-65964554 HITS-CLIP POSITIVE DIRECT TarBase 7.0
MYC hsa-let-7a-5p low: 3 high: 0 2 2 2 -
Low-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Kim Seok-Jun et al. 2012 WB Mammary Gland Breast Cancer Cell Lines N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Western Blot POSITIVE INDIRECT TarBase 7.0
Farkhondeh Farrokhnia et al. 2014 RP O Placenta N/A N/A N/A
Location Method Result Regulation Validation Type Source
chr8:127739898-127741432 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
UNKNOWN Immunohistochemistry POSITIVE INDIRECT TarBase 7.0
RB1 hsa-let-7a-5p low: 2 high: 5 5 6 6 0.761
Low-throughput experiments (0 positive, 2 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Zhang Z et al. 2014 WB Bone SKES1 N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Western Blot NEGATIVE INDIRECT TarBase 7.0
Zhang Z et al. 2014 WB Muscle A673 N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Western Blot NEGATIVE INDIRECT TarBase 7.0
High-throughput experiments (5 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Boudreau RL et al. 2014 IP Brain N/A N/A N/A
Location Method Result Regulation Validation Type Source
chr13:48480030-48480053 HITS-CLIP POSITIVE DIRECT TarBase 8.0
Pillai MM et al. 2014 IP Mammary Gland BT474 N/A N/A
Location Method Result Regulation Validation Type Source
chr13:48480030-48480053 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr13:48456305-48456326 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Kishore S et al. 2011 IP Kidney HEK293 N/A mild MNase digestion
Location Method Result Regulation Validation Type Source
chr13:48456305-48456326 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Balakrishnan I et al. 2014 IP Bone Marrow HMSC N/A N/A
Location Method Result Regulation Validation Type Source
chr13:48456305-48456326 HITS-CLIP POSITIVE DIRECT TarBase 7.0
MFSD4 hsa-let-7a-5p low: 2 high: 5 2 3 3 0.979
Low-throughput experiments (1 positive, 1 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Ryan M. Spengler et al. 2013 RP Cervix HELA HELA N/A
Location Method Result Regulation Validation Type Source
chr1:205600529-205602723 Luciferase Reporter Assay NEGATIVE DIRECT TarBase 7.0
Ryan M. Spengler et al. 2013 RP Kidney HEK293T HEK293T N/A
Location Method Result Regulation Validation Type Source
chr1:205600529-205602723 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
High-throughput experiments (5 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Boudreau RL et al. 2014 IP Brain N/A N/A N/A
Location Method Result Regulation Validation Type Source
chr1:205602438-205602456 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr1:205602438-205602456 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr1:205602438-205602456 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr1:205602438-205602456 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr1:205602438-205602456 HITS-CLIP POSITIVE DIRECT TarBase 8.0
TRIM71 hsa-let-7a-5p low: 2 high: 1 3 3 3 -
Low-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Thales Papagiannakopoulos et al. 2008 RP Brain U251 U251 N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
You-Chin Lin et al. 2007 RP Liver HEPG2 N/A N/A
Location Method Result Regulation Validation Type Source
chr3:32891966-32891990 Luciferase Reporter Assay POSITIVE DIRECT TarBase 6.0
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Kishore S et al. 2011 IP Kidney HEK293 N/A mild MNase digestion
Location Method Result Regulation Validation Type Source
chr3:32892051-32892070 PAR-CLIP POSITIVE DIRECT TarBase 7.0
MYCBP hsa-let-7a-5p low: 2 high: 1 2 3 3 0.859
Low-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Ryan M. Spengler et al. 2013 RP Cervix HELA HELA N/A
Location Method Result Regulation Validation Type Source
chr1:38863166-38864692 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
Ryan M. Spengler et al. 2013 RP Kidney HEK293T HEK293T N/A
Location Method Result Regulation Validation Type Source
chr1:38863166-38864692 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Kameswaran V et al. 2014 IP Pancreas BETA Cells N/A N/A
Location Method Result Regulation Validation Type Source
chr1:38863569-38863589 HITS-CLIP POSITIVE DIRECT TarBase 7.0
MAPK1 hsa-let-7a-5p low: 2 high: 1 2 2 2 0.559
Low-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Farkhondeh Farrokhnia et al. 2014 RP O Placenta N/A N/A N/A
Location Method Result Regulation Validation Type Source
chr22:21764241-21764538 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
UNKNOWN Immunohistochemistry POSITIVE INDIRECT TarBase 7.0
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chr22:21805891-21805918 HITS-CLIP POSITIVE DIRECT TarBase 7.0
MYO1F hsa-let-7a-5p low: 2 high: 0 1 2 2 0.765
Low-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Ryan M. Spengler et al. 2013 RP Cervix HELA HELA N/A
Location Method Result Regulation Validation Type Source
chr19:8521178-8521533 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
Ryan M. Spengler et al. 2013 RP Kidney HEK293T HEK293T N/A
Location Method Result Regulation Validation Type Source
chr19:8521178-8521533 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
E2F6 hsa-let-7a-5p low: 2 high: 0 1 2 2 -
Low-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Ryan M. Spengler et al. 2013 RP Cervix HELA HELA N/A
Location Method Result Regulation Validation Type Source
chr2:11444657-11446329 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
Ryan M. Spengler et al. 2013 RP Kidney HEK293T HEK293T N/A
Location Method Result Regulation Validation Type Source
chr2:11444657-11446329 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
NF2 hsa-let-7a-5p low: 2 high: 0 1 2 2 -
Low-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Fanyin Meng et al. 2007 RP Embryo MZ1 MZ1 N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Luciferase Reporter Assay POSITIVE DIRECT TarBase 6.0
Fanyin Meng et al. 2007 RP Liver KMCH1 KMCH1 N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Luciferase Reporter Assay POSITIVE DIRECT TarBase 6.0
CCR7 hsa-let-7a-5p low: 2 high: 0 1 1 1 0.841
Low-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Kim Seok-Jun et al. 2012 WB RP Mammary Gland Breast Cancer Cell Lines N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Western Blot POSITIVE INDIRECT TarBase 7.0
chr17:40554563-40554585 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
FOS hsa-let-7a-5p low: 2 high: 0 1 1 1 -
Low-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Li-Na Wang et al. 2013 WB qP Prostate PC3 N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Western Blot POSITIVE INDIRECT TarBase 7.0
UNKNOWN qPCR POSITIVE INDIRECT TarBase 7.0
PRDM1 hsa-let-7a-5p low: 1 high: 4 5 5 4 -
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Kui Nie et al. 2010 RP Kidney HEK293T HEK293T N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
High-throughput experiments (4 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Pleura B lymphocyte N/A N/A
Location Method Result Regulation Validation Type Source
chr6:106099419-106099449 Chimeric fragments POSITIVE DIRECT TarBase 8.0
Xue Y et al. 2013 IP Cervix HELA N/A Hela cells were treated with control shRNA.
Location Method Result Regulation Validation Type Source
chr6:106107421-106107436 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Haecker Irina et al. 2012 IP Bone Marrow BCBL1 N/A N/A
Location Method Result Regulation Validation Type Source
chr6:106107421-106107436 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Eva Gottwein et al. 2011 IP Pleura BC1 N/A N/A
Location Method Result Regulation Validation Type Source
chr6:106108793-106108818 PAR-CLIP POSITIVE DIRECT TarBase 7.0
AGO4 hsa-let-7a-5p low: 1 high: 1 2 2 2 0.924
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Takane Kahori et al. 2010 RP Cervix HELA HELA N/A
Location Method Result Regulation Validation Type Source
chr1:35853729-35855836 Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Pillai MM et al. 2014 IP Mammary Gland BT474 N/A N/A
Location Method Result Regulation Validation Type Source
chr1:35853829-35853851 HITS-CLIP POSITIVE DIRECT TarBase 7.0
CDK4 hsa-let-7a-5p low: 1 high: 1 2 2 2 -
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Kim Seok-Jun et al. 2012 WB Mammary Gland Breast Cancer Cell Lines N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Western Blot POSITIVE INDIRECT TarBase 7.0
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr12:57751707-57751734 HITS-CLIP POSITIVE DIRECT TarBase 7.0
MPL hsa-let-7a-5p low: 1 high: 0 1 1 1 -
Low-throughput experiments (0 positive, 1 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Michael Girardot et al. 2010 RP Bone Marrow HEL JAK2 N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Luciferase Reporter Assay NEGATIVE DIRECT TarBase 7.0
SOX2 hsa-let-7a-5p low: 1 high: 0 1 1 1 -
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Meng-Yin Yang et al. 2014 WB Brain AA Sphere N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Western Blot POSITIVE INDIRECT TarBase 7.0
NIRF(hsa) hsa-let-7a-5p low: 1 high: 0 1 1 1 -
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Xiaoyan He et al. 2009 WB N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Western Blot POSITIVE INDIRECT TarBase 6.0