Please cite:
Dimitra Karagkouni, Maria D. Paraskevopoulou, Serafeim Chatzopoulos, Ioannis S. Vlachos, Spyros Tastsoglou, Ilias Kanellos, Dimitris Papadimitriou, Ioannis Kavakiotis, Sofia Maniou, Giorgos Skoufos, Thanasis Vergoulis, Theodore Dalamagas, Artemis G. Hatzigeorgiou; DIANA-TarBase v8: a decade-long collection of experimentally supported miRNA–gene interactions, Nucleic Acids Research, gkx1141, https://doi.org/10.1093/nar/gkx1141
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hsa-let-7b-5p


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Interactions: 5530, Experiments: (low: , high: , unknown: ) Cell lines: , Tissues: , Publications:
Gene name miRNA name Experiments
throughput
Publications Cell lines Tissues Pred. Score
CYP2J2 hsa-let-7b-5p low: 15 high: 0 1 6 7 -
Low-throughput experiments (9 positive, 6 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Fuqiong Chen et al. 2012 RP RP Lung SKMES1 SKMES1 N/A
Location Method Result Regulation Validation Type Source
chr1:59893483-59893506 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
chr1:59892911-59893678 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
chr1:59893519-59893540 Luciferase Reporter Assay NEGATIVE DIRECT TarBase 7.0
chr1:59893506-59893525 Luciferase Reporter Assay NEGATIVE DIRECT TarBase 7.0
chr1:59893435-59893464 Luciferase Reporter Assay NEGATIVE DIRECT TarBase 7.0
chr1:59893325-59893349 Luciferase Reporter Assay NEGATIVE DIRECT TarBase 7.0
chr1:59893311-59893341 Luciferase Reporter Assay NEGATIVE DIRECT TarBase 7.0
Fuqiong Chen et al. 2012 WB Tongue TCA8113 N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Western Blot POSITIVE INDIRECT TarBase 7.0
Fuqiong Chen et al. 2012 WB Lung SKMES1 N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Western Blot POSITIVE INDIRECT TarBase 7.0
Fuqiong Chen et al. 2012 WB Lung Cancerous Tissues N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Western Blot POSITIVE INDIRECT TarBase 7.0
Fuqiong Chen et al. 2012 qP Breast Cancerous Tissues N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN qPCR NEGATIVE INDIRECT TarBase 7.0
Fuqiong Chen et al. 2012 WB Mammary Gland MDAMB435 N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Western Blot POSITIVE INDIRECT TarBase 7.0
Fuqiong Chen et al. 2012 WB Cervix HELA N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Western Blot POSITIVE INDIRECT TarBase 7.0
Fuqiong Chen et al. 2012 RP Mammary Gland MDAMB435 MDAMB435 N/A
Location Method Result Regulation Validation Type Source
chr1:59892911-59893678 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
Fuqiong Chen et al. 2012 RP Liver HEPG2 HEPG2 N/A
Location Method Result Regulation Validation Type Source
chr1:59892911-59893678 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
HMGA2 hsa-let-7b-5p low: 2 high: 20 9 8 5 -
Low-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Alajez Nehad M. et al. 2012 RP Pharynx FADU HEK293 N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
Guo L. et al. 2013 RP Mammary Gland MDAMB231 MCF7 N/A
Location Method Result Regulation Validation Type Source
chr12:65965688-65965862 Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
High-throughput experiments (20 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr12:65965794-65965820 Chimeric fragments POSITIVE DIRECT TarBase 8.0
Selbach M et al. 2008 MA Cervix HELA N/A 8hrs post-transfection, Overexpression
Location Method Result Regulation Validation Type Source
UNKNOWN Microarrays POSITIVE INDIRECT TarBase 8.0
Selbach M et al. 2008 MA Cervix HELA N/A 32hrs post-transfection, Overexpression
Location Method Result Regulation Validation Type Source
UNKNOWN Microarrays POSITIVE INDIRECT TarBase 8.0
Whisnant Adam W et al. 2013 IP Cervix TZMBL N/A shRNAs against HIV-1
Location Method Result Regulation Validation Type Source
chr12:65964534-65964554 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Whisnant Adam W et al. 2013 IP Cervix TZMBL N/A N/A
Location Method Result Regulation Validation Type Source
chr12:65964534-65964554 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Sebastian Memczak et al. 2013 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr12:65964534-65964554 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Kishore S et al. 2011 IP Kidney HEK293 N/A mild MNase digestion
Location Method Result Regulation Validation Type Source
chr12:65965814-65965839 PAR-CLIP POSITIVE DIRECT TarBase 7.0
chr12:65964894-65964917 PAR-CLIP POSITIVE DIRECT TarBase 7.0
chr12:65964534-65964554 PAR-CLIP POSITIVE DIRECT TarBase 7.0
chr12:65964534-65964554 PAR-CLIP POSITIVE DIRECT TarBase 7.0
chr12:65964383-65964405 PAR-CLIP POSITIVE DIRECT TarBase 7.0
chr12:65963296-65963320 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr12:65964534-65964554 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr12:65964383-65964405 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Balakrishnan I et al. 2014 IP Bone Marrow HS5 N/A N/A
Location Method Result Regulation Validation Type Source
chr12:65965814-65965839 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr12:65964939-65964966 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr12:65964534-65964554 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr12:65964383-65964405 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Balakrishnan I et al. 2014 IP Bone Marrow HS27A N/A N/A
Location Method Result Regulation Validation Type Source
chr12:65964534-65964554 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr12:65964383-65964405 HITS-CLIP POSITIVE DIRECT TarBase 7.0
BAX hsa-let-7b-5p low: 2 high: 2 2 3 3 -
Low-throughput experiments (0 positive, 2 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Fuqiong Chen et al. 2012 WB Mammary Gland MDAMB435 N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Western Blot NEGATIVE INDIRECT TarBase 7.0
Fuqiong Chen et al. 2012 WB Heart H9C2 N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Western Blot NEGATIVE INDIRECT TarBase 7.0
High-throughput experiments (0 positive, 2 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Selbach M et al. 2008 MA Cervix HELA N/A 8hrs post-transfection, Overexpression
Location Method Result Regulation Validation Type Source
UNKNOWN Microarrays NEGATIVE INDIRECT TarBase 8.0
Selbach M et al. 2008 MA Cervix HELA N/A 32hrs post-transfection, Overexpression
Location Method Result Regulation Validation Type Source
UNKNOWN Microarrays NEGATIVE INDIRECT TarBase 8.0
CTHRC1 hsa-let-7b-5p low: 2 high: 2 2 3 3 -
Low-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Yu J. et al. 2015 RP Stomach AGS AGS N/A
Location Method Result Regulation Validation Type Source
chr8:103382605-103382627 Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
Yu J. et al. 2015 RP Gastric SGC7901 SGC7901 N/A
Location Method Result Regulation Validation Type Source
chr8:103382605-103382627 Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
High-throughput experiments (0 positive, 2 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Selbach M et al. 2008 MA Cervix HELA N/A 8hrs post-transfection, Overexpression
Location Method Result Regulation Validation Type Source
UNKNOWN Microarrays NEGATIVE INDIRECT TarBase 8.0
Selbach M et al. 2008 MA Cervix HELA N/A 32hrs post-transfection, Overexpression
Location Method Result Regulation Validation Type Source
UNKNOWN Microarrays NEGATIVE INDIRECT TarBase 8.0
RPIA hsa-let-7b-5p low: 2 high: 0 1 2 2 -
Low-throughput experiments (0 positive, 2 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Kiriakidou M et al. 2004 RP Brain MN1 MN1 N/A
Location Method Result Regulation Validation Type Source
chr2:88750120-88750142 Luciferase Reporter Assay NEGATIVE DIRECT TarBase 6.0
Kiriakidou M et al. 2004 RP Cervix HELA HELA N/A
Location Method Result Regulation Validation Type Source
chr2:88750120-88750142 Luciferase Reporter Assay NEGATIVE DIRECT TarBase 6.0
MAPK1 hsa-let-7b-5p low: 2 high: 0 1 2 2 -
Low-throughput experiments (0 positive, 2 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Fuqiong Chen et al. 2012 WB Mammary Gland MDAMB435 N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Western Blot NEGATIVE INDIRECT TarBase 7.0
Fuqiong Chen et al. 2012 WB Heart H9C2 N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Western Blot NEGATIVE INDIRECT TarBase 7.0
GNPDA1 hsa-let-7b-5p low: 2 high: 0 1 1 1 -
Low-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Xue Y et al. 2013 WB Cervix HELA N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Western Blot POSITIVE INDIRECT TarBase 7.0
Xue Y et al. 2013 RP Cervix HELA HEK293T Dual Luciferase Reporter Assay
Location Method Result Regulation Validation Type Source
UNKNOWN Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
PIK3CA hsa-let-7b-5p low: 2 high: 0 1 2 2 0.715
Low-throughput experiments (1 positive, 1 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Fuqiong Chen et al. 2012 WB Mammary Gland MDAMB435 N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Western Blot POSITIVE INDIRECT TarBase 7.0
Fuqiong Chen et al. 2012 WB Heart H9C2 N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Western Blot NEGATIVE INDIRECT TarBase 7.0
LIN28A hsa-let-7b-5p low: 2 high: 0 1 2 2 -
Low-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Kiriakidou M et al. 2004 RP Brain MN1 MN1 N/A
Location Method Result Regulation Validation Type Source
chr1:26427347-26427370 Luciferase Reporter Assay POSITIVE DIRECT TarBase 6.0
Kiriakidou M et al. 2004 RP Cervix HELA HELA N/A
Location Method Result Regulation Validation Type Source
chr1:26427347-26427370 Luciferase Reporter Assay POSITIVE DIRECT TarBase 6.0
AKT1 hsa-let-7b-5p low: 2 high: 0 1 2 2 -
Low-throughput experiments (0 positive, 2 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Fuqiong Chen et al. 2012 WB Mammary Gland MDAMB435 N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Western Blot NEGATIVE INDIRECT TarBase 7.0
Fuqiong Chen et al. 2012 WB Heart H9C2 N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Western Blot NEGATIVE INDIRECT TarBase 7.0
ACTG1 hsa-let-7b-5p low: 2 high: 0 1 2 2 0.466
Low-throughput experiments (0 positive, 2 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Kiriakidou M et al. 2004 RP Brain MN1 MN1 N/A
Location Method Result Regulation Validation Type Source
chr17:81510598-81510619 Luciferase Reporter Assay NEGATIVE DIRECT TarBase 6.0
Kiriakidou M et al. 2004 RP Cervix HELA HELA N/A
Location Method Result Regulation Validation Type Source
chr17:81510598-81510619 Luciferase Reporter Assay NEGATIVE DIRECT TarBase 6.0
IGF1R hsa-let-7b-5p low: 1 high: 13 8 8 5 0.995
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Alajez Nehad M. et al. 2012 RP Pharynx FADU HEK293 N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
High-throughput experiments (13 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Pleura B lymphocyte N/A N/A
Location Method Result Regulation Validation Type Source
chr15:98960039-98960068 Chimeric fragments POSITIVE DIRECT TarBase 8.0
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr15:98960037-98960068 Chimeric fragments POSITIVE DIRECT TarBase 8.0
Xue Y et al. 2013 IP Cervix HELA N/A Hela cells were treated with control shRNA.
Location Method Result Regulation Validation Type Source
chr15:98960047-98960068 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Whisnant Adam W et al. 2013 IP Cervix TZMBL N/A N/A
Location Method Result Regulation Validation Type Source
chr15:98960047-98960068 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Whisnant Adam W et al. 2013 IP Cervix TZMBL N/A shRNAs against HIV-1
Location Method Result Regulation Validation Type Source
chr15:98960211-98960235 PAR-CLIP POSITIVE DIRECT TarBase 7.0
chr15:98960047-98960068 PAR-CLIP POSITIVE DIRECT TarBase 7.0
chr15:98707658-98707681 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Skalsky Rebecca L. et al. 2012 IP N/A EF3DAGO2 N/A N/A
Location Method Result Regulation Validation Type Source
chr15:98960047-98960068 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Sebastian Memczak et al. 2013 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr15:98960047-98960068 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Kishore S et al. 2011 IP Kidney HEK293 N/A mild MNase digestion
Location Method Result Regulation Validation Type Source
chr15:98960047-98960068 PAR-CLIP POSITIVE DIRECT TarBase 7.0
chr15:98960047-98960068 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Eva Gottwein et al. 2011 IP Pleura BC3 N/A N/A
Location Method Result Regulation Validation Type Source
chr15:98960047-98960068 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Eva Gottwein et al. 2011 IP Pleura BC1 N/A N/A
Location Method Result Regulation Validation Type Source
chr15:98960047-98960068 PAR-CLIP POSITIVE DIRECT TarBase 7.0
PRDM1 hsa-let-7b-5p low: 1 high: 5 6 5 4 -
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Kui Nie et al. 2010 RP Kidney HEK293T HEK293T N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
High-throughput experiments (4 positive, 1 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Pleura B lymphocyte N/A N/A
Location Method Result Regulation Validation Type Source
chr6:106099419-106099449 Chimeric fragments POSITIVE DIRECT TarBase 8.0
Selbach M et al. 2008 MA Cervix HELA N/A 8hrs post-transfection, Overexpression
Location Method Result Regulation Validation Type Source
UNKNOWN Microarrays NEGATIVE INDIRECT TarBase 8.0
Xue Y et al. 2013 IP Cervix HELA N/A Hela cells were treated with control shRNA.
Location Method Result Regulation Validation Type Source
chr6:106107417-106107436 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Haecker Irina et al. 2012 IP Bone Marrow BCBL1 N/A N/A
Location Method Result Regulation Validation Type Source
chr6:106107417-106107436 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Eva Gottwein et al. 2011 IP Pleura BC1 N/A N/A
Location Method Result Regulation Validation Type Source
chr6:106108798-106108818 PAR-CLIP POSITIVE DIRECT TarBase 7.0
CCND2 hsa-let-7b-5p low: 1 high: 11 5 7 5 0.875
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Alajez Nehad M. et al. 2012 RP Pharynx FADU HEK293 N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
High-throughput experiments (11 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Boudreau RL et al. 2014 IP Brain N/A N/A N/A
Location Method Result Regulation Validation Type Source
chr12:4302038-4302065 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr12:4302038-4302065 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr12:4302038-4302065 HITS-CLIP POSITIVE DIRECT TarBase 8.0
Skalsky Rebecca L. et al. 2012 IP N/A LCLBAC N/A N/A
Location Method Result Regulation Validation Type Source
chr12:4304904-4304928 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Skalsky Rebecca L. et al. 2012 IP N/A LCL35 N/A N/A
Location Method Result Regulation Validation Type Source
chr12:4304904-4304928 PAR-CLIP POSITIVE DIRECT TarBase 7.0
chr12:4301977-4301998 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Kishore S et al. 2011 IP Kidney HEK293 N/A mild MNase digestion
Location Method Result Regulation Validation Type Source
chr12:4304904-4304928 PAR-CLIP POSITIVE DIRECT TarBase 7.0
chr12:4301977-4301998 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Eva Gottwein et al. 2011 IP Pleura BC3 N/A N/A
Location Method Result Regulation Validation Type Source
chr12:4301977-4301998 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Eva Gottwein et al. 2011 IP Pleura BC1 N/A N/A
Location Method Result Regulation Validation Type Source
chr12:4304904-4304928 PAR-CLIP POSITIVE DIRECT TarBase 7.0
chr12:4302038-4302065 PAR-CLIP POSITIVE DIRECT TarBase 7.0
CCND1 hsa-let-7b-5p low: 1 high: 4 5 5 5 -
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Julia Schultz et al. 2008 RP Skin G361 N/A N/A
Location Method Result Regulation Validation Type Source
chr11:69651375-69654407 Luciferase Reporter Assay POSITIVE DIRECT TarBase 6.0
High-throughput experiments (4 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Whisnant Adam W et al. 2013 IP Cervix TZMBL N/A shRNAs against HIV-1
Location Method Result Regulation Validation Type Source
chr11:69653482-69653502 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Pillai MM et al. 2014 IP Mammary Gland BT474 N/A N/A
Location Method Result Regulation Validation Type Source
chr11:69653482-69653502 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Kishore S et al. 2011 IP Kidney HEK293 N/A mild MNase digestion
Location Method Result Regulation Validation Type Source
chr11:69653482-69653502 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Balakrishnan I et al. 2014 IP Bone Marrow HS5 N/A N/A
Location Method Result Regulation Validation Type Source
chr11:69653482-69653502 HITS-CLIP POSITIVE DIRECT TarBase 7.0
EDN1 hsa-let-7b-5p low: 1 high: 5 5 4 3 0.993
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Tsai KW. et al. 2015 RP Stomach AGS HEK293T N/A
Location Method Result Regulation Validation Type Source
chr6:12296092-12297166 Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
High-throughput experiments (5 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Selbach M et al. 2008 MA Cervix HELA N/A 8hrs post-transfection, Overexpression
Location Method Result Regulation Validation Type Source
UNKNOWN Microarrays POSITIVE INDIRECT TarBase 8.0
Selbach M et al. 2008 MA Cervix HELA N/A 32hrs post-transfection, Overexpression
Location Method Result Regulation Validation Type Source
UNKNOWN Microarrays POSITIVE INDIRECT TarBase 8.0
Xue Y et al. 2013 IP Cervix HELA N/A Hela cells were treated with control shRNA.
Location Method Result Regulation Validation Type Source
chr6:12296624-12296646 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Whisnant Adam W et al. 2013 IP Cervix TZMBL N/A shRNAs against HIV-1
Location Method Result Regulation Validation Type Source
chr6:12296624-12296646 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Pillai MM et al. 2014 IP Mammary Gland BT474 N/A N/A
Location Method Result Regulation Validation Type Source
chr6:12296624-12296646 HITS-CLIP POSITIVE DIRECT TarBase 7.0
IGF2BP2 hsa-let-7b-5p low: 1 high: 2 3 3 3 -
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Alajez Nehad M. et al. 2012 RP Pharynx FADU HEK293 N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Selbach M et al. 2008 PR N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN pSILAC POSITIVE INDIRECT TarBase 6.0
Balakrishnan I et al. 2014 IP Bone Marrow HS5 N/A N/A
Location Method Result Regulation Validation Type Source
chr3:185644220-185644241 HITS-CLIP POSITIVE DIRECT TarBase 7.0
CCNA1 hsa-let-7b-5p low: 1 high: 0 1 1 1 -
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Julia Schultz et al. 2008 RP Skin G361 N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Luciferase Reporter Assay POSITIVE DIRECT TarBase 6.0
NME1 hsa-let-7b-5p low: 1 high: 0 1 1 1 -
Low-throughput experiments (0 positive, 1 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Fuqiong Chen et al. 2012 WB Mammary Gland MDAMB435 N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Western Blot NEGATIVE INDIRECT TarBase 7.0
MT-ATP6 hsa-let-7b-5p low: 0 high: 6 3 3 2 -
High-throughput experiments (6 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chrMT:8660-8695 Chimeric fragments POSITIVE DIRECT TarBase 8.0
Moore M et al. 2015 IP Liver HUH7.5 N/A N/A
Location Method Result Regulation Validation Type Source
chrMT:8454-8529 CLEAR-CLIP POSITIVE DIRECT TarBase 8.0
chrMT:8671-8746 CLEAR-CLIP POSITIVE DIRECT TarBase 8.0
Helwak Aleksandra et al. 2013 IP Kidney FLPIN_TREX_293 N/A N/A
Location Method Result Regulation Validation Type Source
chrMT:9070-9121 CLASH POSITIVE DIRECT TarBase 7.0
chrMT:8947-9022 CLASH POSITIVE DIRECT TarBase 7.0
chrMT:8905-8968 CLASH POSITIVE DIRECT TarBase 7.0