Please cite:
Dimitra Karagkouni, Maria D. Paraskevopoulou, Serafeim Chatzopoulos, Ioannis S. Vlachos, Spyros Tastsoglou, Ilias Kanellos, Dimitris Papadimitriou, Ioannis Kavakiotis, Sofia Maniou, Giorgos Skoufos, Thanasis Vergoulis, Theodore Dalamagas, Artemis G. Hatzigeorgiou; DIANA-TarBase v8: a decade-long collection of experimentally supported miRNA–gene interactions, Nucleic Acids Research, gkx1141, https://doi.org/10.1093/nar/gkx1141
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hsa-let-7e-5p


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Filters
Interactions: 2457, Experiments: (low: , high: , unknown: ) Cell lines: , Tissues: , Publications:
Gene name miRNA name Experiments
throughput
Publications Cell lines Tissues Pred. Score
SMC1A hsa-let-7e-5p low: 2 high: 0 1 2 2 0.997
Low-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Kiriakidou M et al. 2004 RP Brain MN1 MN1 N/A
Location Method Result Regulation Validation Type Source
chrX:53380009-53380026 Luciferase Reporter Assay POSITIVE DIRECT TarBase 6.0
Kiriakidou M et al. 2004 RP Cervix HELA HELA N/A
Location Method Result Regulation Validation Type Source
chrX:53380009-53380026 Luciferase Reporter Assay POSITIVE DIRECT TarBase 6.0
EIF3J hsa-let-7e-5p low: 2 high: 0 1 2 2 0.481
Low-throughput experiments (0 positive, 2 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Kiriakidou M et al. 2004 RP Brain MN1 MN1 N/A
Location Method Result Regulation Validation Type Source
chr15:44561500-44561520 Luciferase Reporter Assay NEGATIVE DIRECT TarBase 6.0
Kiriakidou M et al. 2004 RP Cervix HELA HELA N/A
Location Method Result Regulation Validation Type Source
chr15:44561500-44561520 Luciferase Reporter Assay NEGATIVE DIRECT TarBase 6.0
AGO1 hsa-let-7e-5p low: 1 high: 2 3 4 4 0.578
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Zhen Chen et al. 2013 RP Umbilical Vein HUVEC HEK293 N/A
Location Method Result Regulation Validation Type Source
chr1:35,919,608-35,930,528 Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Helwak Aleksandra et al. 2013 IP Kidney FLPIN_TREX_293 N/A N/A
Location Method Result Regulation Validation Type Source
chr1:35913913-35913980 CLASH POSITIVE DIRECT TarBase 7.0
Pillai MM et al. 2014 IP Mammary Gland BT474 N/A N/A
Location Method Result Regulation Validation Type Source
chr1:35919601-35919628 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Other Databases
Publication Methods Tissue Cell line Tested cell line Exp. condition
Helwak Aleksandra et al. 2013 O N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Other UNKNOWN UNKNOWN miRTarBase
Zhen Chen et al. 2013 O N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Other UNKNOWN UNKNOWN miRTarBase
AGO2 hsa-let-7e-5p low: 1 high: 1 2 2 2 -
Low-throughput experiments (0 positive, 1 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Zhen Chen et al. 2013 RP Umbilical Vein HUVEC HEK293 N/A
Location Method Result Regulation Validation Type Source
chr8:140,520,156-140,532,043 Luciferase Reporter Assay NEGATIVE DIRECT TarBase 8.0
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr8:140556220-140556248 Chimeric fragments POSITIVE DIRECT TarBase 8.0
AURKB hsa-let-7e-5p low: 1 high: 3 3 3 3 -
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Matthew J Murray et al. 2013 RP Ovary 2102EP 2102EP N/A
Location Method Result Regulation Validation Type Source
chr17:8207352-8207769 Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Whisnant Adam W et al. 2013 IP Cervix TZMBL N/A shRNAs against HIV-1
Location Method Result Regulation Validation Type Source
chr17:8204772-8204799 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Kishore S et al. 2011 IP Kidney HEK293 N/A mild MNase digestion
Location Method Result Regulation Validation Type Source
chr17:8204772-8204799 PAR-CLIP POSITIVE DIRECT TarBase 7.0
chr17:8204772-8204799 PAR-CLIP POSITIVE DIRECT TarBase 7.0
MYCN hsa-let-7e-5p low: 1 high: 1 3 3 3 0.994
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Matthew J Murray et al. 2013 RP Ovary 2102EP 2102EP N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Kishore S et al. 2011 IP Kidney HEK293 N/A mild MNase digestion
Location Method Result Regulation Validation Type Source
chr2:15946588-15946609 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Other Databases
Publication Methods Tissue Cell line Tested cell line Exp. condition
Matthew J Murray et al. 2013 O N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Other UNKNOWN UNKNOWN miRTarBase
Buechner J et al. 2011 O N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Other UNKNOWN UNKNOWN miRTarBase
MPL hsa-let-7e-5p low: 1 high: 0 1 1 1 -
Low-throughput experiments (0 positive, 1 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Michael Girardot et al. 2010 RP Bone Marrow HEL JAK2 N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Luciferase Reporter Assay NEGATIVE DIRECT TarBase 7.0
MYCN hsa-let-7e-5p low: 1 high: 0 1 1 1 -
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Buechner J et al. 2011 RP Breast Cancerous Tissues N/A HEK293 N/A
Location Method Result Regulation Validation Type Source
chr2:15941055-15941076 Luciferase Reporter Assay POSITIVE DIRECT TarBase 6.0
LIN28A hsa-let-7e-5p low: 1 high: 0 1 1 1 -
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Matthew J Murray et al. 2013 RP Ovary 2102EP 2102EP N/A
Location Method Result Regulation Validation Type Source
chr1:26425484-26426311 Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
MT-ND1 hsa-let-7e-5p low: 0 high: 2 2 3 3 -
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Helwak Aleksandra et al. 2013 IP Kidney FLPIN_TREX_293 N/A N/A
Location Method Result Regulation Validation Type Source
chrMT:3307-3363 CLASH POSITIVE DIRECT TarBase 7.0
Moore M et al. 2015 IP Liver HUH7.5 N/A N/A
Location Method Result Regulation Validation Type Source
chrMT:3304-3379 CLEAR-CLIP POSITIVE DIRECT TarBase 8.0
Other Databases
Publication Methods Tissue Cell line Tested cell line Exp. condition
Helwak Aleksandra et al. 2013 O N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Other UNKNOWN UNKNOWN miRTarBase
MT-ND2 hsa-let-7e-5p low: 0 high: 2 1 2 2 -
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Helwak Aleksandra et al. 2013 IP Kidney FLPIN_TREX_293 N/A N/A
Location Method Result Regulation Validation Type Source
chrMT:5460-5511 CLASH POSITIVE DIRECT TarBase 7.0
chrMT:4912-4970 CLASH POSITIVE DIRECT TarBase 7.0
Other Databases
Publication Methods Tissue Cell line Tested cell line Exp. condition
Helwak Aleksandra et al. 2013 O N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Other UNKNOWN UNKNOWN miRTarBase
MT-ATP8 hsa-let-7e-5p low: 0 high: 2 2 2 2 -
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Moore M et al. 2015 IP Liver HUH7.5 N/A N/A
Location Method Result Regulation Validation Type Source
chrMT:8448-8523 CLEAR-CLIP POSITIVE DIRECT TarBase 8.0
Helwak Aleksandra et al. 2013 IP Kidney FLPIN_TREX_293 N/A N/A
Location Method Result Regulation Validation Type Source
chrMT:8434-8503 CLASH POSITIVE DIRECT TarBase 7.0
DICER1 hsa-let-7e-5p low: 0 high: 39 9 10 5 -
High-throughput experiments (39 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr14:95089014-95089048 Chimeric fragments POSITIVE DIRECT TarBase 8.0
Boudreau RL et al. 2014 IP Brain N/A N/A N/A
Location Method Result Regulation Validation Type Source
chr14:95103748-95103766 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr14:95103748-95103766 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr14:95103748-95103766 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr14:95103748-95103766 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr14:95103748-95103766 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr14:95103748-95103766 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr14:95103640-95103661 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr14:95089135-95089158 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr14:95103748-95103766 HITS-CLIP POSITIVE DIRECT TarBase 8.0
Xue Y et al. 2013 IP Cervix HELA N/A Hela cells were treated with control shRNA.
Location Method Result Regulation Validation Type Source
chr14:95103748-95103766 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr14:95087574-95087598 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Whisnant Adam W et al. 2013 IP Cervix TZMBL N/A shRNAs against HIV-1
Location Method Result Regulation Validation Type Source
chr14:95103748-95103766 PAR-CLIP POSITIVE DIRECT TarBase 7.0
chr14:95089135-95089158 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Kishore S et al. 2011 IP Kidney HEK293 N/A mild MNase digestion
Location Method Result Regulation Validation Type Source
chr14:95103748-95103766 PAR-CLIP POSITIVE DIRECT TarBase 7.0
chr14:95103748-95103766 PAR-CLIP POSITIVE DIRECT TarBase 7.0
chr14:95103640-95103661 PAR-CLIP POSITIVE DIRECT TarBase 7.0
chr14:95103640-95103661 PAR-CLIP POSITIVE DIRECT TarBase 7.0
chr14:95094106-95094127 PAR-CLIP POSITIVE DIRECT TarBase 7.0
chr14:95089135-95089158 PAR-CLIP POSITIVE DIRECT TarBase 7.0
chr14:95087574-95087598 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr14:95103748-95103766 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr14:95103640-95103661 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr14:95103640-95103661 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr14:95103640-95103661 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr14:95103748-95103766 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr14:95103640-95103661 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chr14:95107889-95107910 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr14:95103640-95103661 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr14:95094106-95094127 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr14:95103748-95103766 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr14:95103640-95103661 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr14:95094106-95094127 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Haecker Irina et al. 2012 IP Bone Marrow BCBL1 N/A N/A
Location Method Result Regulation Validation Type Source
chr14:95103748-95103766 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Eva Gottwein et al. 2011 IP Pleura BC1 N/A N/A
Location Method Result Regulation Validation Type Source
chr14:95089135-95089158 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Balakrishnan I et al. 2014 IP Bone Marrow HS5 N/A N/A
Location Method Result Regulation Validation Type Source
chr14:95103748-95103766 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr14:95103640-95103661 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Balakrishnan I et al. 2014 IP Bone Marrow HS27A N/A N/A
Location Method Result Regulation Validation Type Source
chr14:95103640-95103661 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Balakrishnan I et al. 2014 IP Bone Marrow HMSC N/A N/A
Location Method Result Regulation Validation Type Source
chr14:95103748-95103766 HITS-CLIP POSITIVE DIRECT TarBase 7.0
NAP1L1 hsa-let-7e-5p low: 0 high: 16 6 8 5 -
High-throughput experiments (16 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr12:76047218-76047241 Chimeric fragments POSITIVE DIRECT TarBase 8.0
Boudreau RL et al. 2014 IP Brain N/A N/A N/A
Location Method Result Regulation Validation Type Source
chr12:76047221-76047243 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr12:76047221-76047243 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr12:76047221-76047243 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr12:76047221-76047243 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr12:76047221-76047243 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr12:76047221-76047243 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr12:76046810-76046838 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr12:76047221-76047243 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr12:76047221-76047243 HITS-CLIP POSITIVE DIRECT TarBase 8.0
Xue Y et al. 2013 IP Cervix HELA N/A Hela cells were treated with control shRNA.
Location Method Result Regulation Validation Type Source
chr12:76047221-76047243 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Pillai MM et al. 2014 IP Mammary Gland BT474 N/A N/A
Location Method Result Regulation Validation Type Source
chr12:76047221-76047243 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Haecker Irina et al. 2012 IP Bone Marrow BCBL1 N/A N/A
Location Method Result Regulation Validation Type Source
chr12:76047221-76047243 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Balakrishnan I et al. 2014 IP Bone Marrow HS5 N/A N/A
Location Method Result Regulation Validation Type Source
chr12:76047221-76047243 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Balakrishnan I et al. 2014 IP Bone Marrow HS27A N/A N/A
Location Method Result Regulation Validation Type Source
chr12:76047221-76047243 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Balakrishnan I et al. 2014 IP Bone Marrow HMSC N/A N/A
Location Method Result Regulation Validation Type Source
chr12:76047221-76047243 HITS-CLIP POSITIVE DIRECT TarBase 7.0
PEG10 hsa-let-7e-5p low: 0 high: 14 7 5 4 -
High-throughput experiments (14 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr7:94667922-94667945 Chimeric fragments POSITIVE DIRECT TarBase 8.0
Boudreau RL et al. 2014 IP Brain N/A N/A N/A
Location Method Result Regulation Validation Type Source
chr7:94667927-94667943 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr7:94665425-94665450 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr7:94665425-94665450 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr7:94665425-94665450 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr7:94665425-94665450 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr7:94665425-94665450 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr7:94667927-94667943 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr7:94665425-94665450 HITS-CLIP POSITIVE DIRECT TarBase 8.0
Xue Y et al. 2013 IP Cervix HELA N/A Hela cells were treated with control shRNA.
Location Method Result Regulation Validation Type Source
chr7:94667927-94667943 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Whisnant Adam W et al. 2013 IP Cervix TZMBL N/A shRNAs against HIV-1
Location Method Result Regulation Validation Type Source
chr7:94667927-94667943 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Pillai MM et al. 2014 IP Mammary Gland BT474 N/A N/A
Location Method Result Regulation Validation Type Source
chr7:94668848-94668871 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Kishore S et al. 2011 IP Kidney HEK293 N/A mild MNase digestion
Location Method Result Regulation Validation Type Source
chr7:94667927-94667943 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Hafner M. et al. 2010 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN PAR-CLIP POSITIVE DIRECT TarBase 6.0
VEZT hsa-let-7e-5p low: 0 high: 12 6 6 5 -
High-throughput experiments (12 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr12:95301014-95301042 Chimeric fragments POSITIVE DIRECT TarBase 8.0
Boudreau RL et al. 2014 IP Brain N/A N/A N/A
Location Method Result Regulation Validation Type Source
chr12:95282441-95282464 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr12:95282441-95282464 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr12:95282441-95282464 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr12:95282441-95282464 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr12:95282441-95282464 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr12:95282441-95282464 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr12:95282441-95282464 HITS-CLIP POSITIVE DIRECT TarBase 8.0
Xue Y et al. 2013 IP Cervix HELA N/A Hela cells were treated with control shRNA.
Location Method Result Regulation Validation Type Source
chr12:95282441-95282464 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Whisnant Adam W et al. 2013 IP Cervix TZMBL N/A shRNAs against HIV-1
Location Method Result Regulation Validation Type Source
chr12:95282441-95282464 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Pillai MM et al. 2014 IP Mammary Gland BT474 N/A N/A
Location Method Result Regulation Validation Type Source
chr12:95282441-95282464 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Balakrishnan I et al. 2014 IP Bone Marrow HS27A N/A N/A
Location Method Result Regulation Validation Type Source
chr12:95282441-95282464 HITS-CLIP POSITIVE DIRECT TarBase 7.0
SUB1 hsa-let-7e-5p low: 0 high: 7 3 3 3 0.894
High-throughput experiments (7 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Boudreau RL et al. 2014 IP Brain N/A N/A N/A
Location Method Result Regulation Validation Type Source
chr5:32603600-32603623 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr5:32603600-32603623 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr5:32603600-32603623 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr5:32603600-32603623 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr5:32603600-32603623 HITS-CLIP POSITIVE DIRECT TarBase 8.0
Pillai MM et al. 2014 IP Mammary Gland BT474 N/A N/A
Location Method Result Regulation Validation Type Source
chr5:32603600-32603623 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Helwak Aleksandra et al. 2013 IP Kidney FLPIN_TREX_293 N/A N/A
Location Method Result Regulation Validation Type Source
chr5:32603588-32603664 CLASH POSITIVE DIRECT TarBase 7.0
HAND1 hsa-let-7e-5p low: 0 high: 5 3 3 2 0.999
High-throughput experiments (5 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr5:154475054-154475079 Chimeric fragments POSITIVE DIRECT TarBase 8.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr5:154475055-154475073 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr5:154475055-154475073 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr5:154475055-154475073 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr5:154475055-154475073 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Other Databases
Publication Methods Tissue Cell line Tested cell line Exp. condition
Kishore S et al. 2011 O N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Other UNKNOWN UNKNOWN miRTarBase
CFL2 hsa-let-7e-5p low: 0 high: 5 4 4 3 -
High-throughput experiments (5 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr14:34712274-34712298 Chimeric fragments POSITIVE DIRECT TarBase 8.0
Pillai MM et al. 2014 IP Mammary Gland BT474 N/A N/A
Location Method Result Regulation Validation Type Source
chr14:34712275-34712303 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Kishore S et al. 2011 IP Kidney HEK293 N/A mild MNase digestion
Location Method Result Regulation Validation Type Source
chr14:34712275-34712303 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Eva Gottwein et al. 2011 IP Pleura BC3 N/A N/A
Location Method Result Regulation Validation Type Source
chr14:34712275-34712303 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Eva Gottwein et al. 2011 IP Pleura BC1 N/A N/A
Location Method Result Regulation Validation Type Source
chr14:34712275-34712303 PAR-CLIP POSITIVE DIRECT TarBase 7.0
ZFHX4 hsa-let-7e-5p low: 0 high: 5 4 2 2 -
High-throughput experiments (5 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr8:76864361-76864384 Chimeric fragments POSITIVE DIRECT TarBase 8.0
Kishore S et al. 2011 IP Kidney HEK293 N/A mild MNase digestion
Location Method Result Regulation Validation Type Source
chr8:76864207-76864229 PAR-CLIP POSITIVE DIRECT TarBase 7.0
chr8:76705127-76705148 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Hafner M. et al. 2010 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN PAR-CLIP POSITIVE DIRECT TarBase 6.0
Balakrishnan I et al. 2014 IP Bone Marrow HS27A N/A N/A
Location Method Result Regulation Validation Type Source
chr8:76704705-76704733 HITS-CLIP POSITIVE DIRECT TarBase 7.0