Please cite:
Dimitra Karagkouni, Maria D. Paraskevopoulou, Serafeim Chatzopoulos, Ioannis S. Vlachos, Spyros Tastsoglou, Ilias Kanellos, Dimitris Papadimitriou, Ioannis Kavakiotis, Sofia Maniou, Giorgos Skoufos, Thanasis Vergoulis, Theodore Dalamagas, Artemis G. Hatzigeorgiou; DIANA-TarBase v8: a decade-long collection of experimentally supported miRNA–gene interactions, Nucleic Acids Research, gkx1141, https://doi.org/10.1093/nar/gkx1141
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hsa-miR-23c


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Filters
Interactions: 368, Experiments: (low: , high: , unknown: ) Cell lines: , Tissues: , Publications:
Gene name miRNA name Experiments
throughput
Publications Cell lines Tissues Pred. Score
TNRC6A hsa-miR-23c low: 0 high: 2 1 2 2 -
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Embryo ESC N/A N/A
Location Method Result Regulation Validation Type Source
chr16:24823973-24823997 Chimeric fragments POSITIVE DIRECT TarBase 8.0
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr16:24823973-24823997 Chimeric fragments POSITIVE DIRECT TarBase 8.0
YOD1 hsa-miR-23c low: 0 high: 2 1 1 1 -
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr1:207049358-207049382 Chimeric fragments POSITIVE DIRECT TarBase 8.0
chr1:207047560-207047581 Chimeric fragments POSITIVE DIRECT TarBase 8.0
NUFIP2 hsa-miR-23c low: 0 high: 3 3 3 3 0.956
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr17:29257452-29257485 Chimeric fragments POSITIVE DIRECT TarBase 8.0
Kameswaran V et al. 2014 IP Pancreas BETA Cells N/A N/A
Location Method Result Regulation Validation Type Source
chr17:29263318-29263343 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Haecker Irina et al. 2012 IP Bone Marrow BCBL1 N/A N/A
Location Method Result Regulation Validation Type Source
chr17:29258824-29258842 HITS-CLIP POSITIVE DIRECT TarBase 7.0
ATXN7L3B hsa-miR-23c low: 0 high: 2 6 3 3 0.612
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr12:74539447-74539468 Chimeric fragments POSITIVE DIRECT TarBase 8.0
Balakrishnan I et al. 2014 IP Bone Marrow HMSC N/A N/A
Location Method Result Regulation Validation Type Source
chr12:74539445-74539467 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Other Databases
Publication Methods Tissue Cell line Tested cell line Exp. condition
Hafner M. et al. 2010 O N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Other UNKNOWN UNKNOWN miRTarBase
Whisnant Adam W et al. 2013 O N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Other UNKNOWN UNKNOWN miRTarBase
Farazi Thalia A et al. 2014 O N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Other UNKNOWN UNKNOWN miRTarBase
Kishore S et al. 2011 O N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Other UNKNOWN UNKNOWN miRTarBase
AKAP11 hsa-miR-23c low: 0 high: 2 2 2 2 0.840
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr13:42320786-42320810 Chimeric fragments POSITIVE DIRECT TarBase 8.0
Skalsky Rebecca L. et al. 2012 IP N/A EF3DAGO2 N/A N/A
Location Method Result Regulation Validation Type Source
chr13:42320783-42320806 PAR-CLIP POSITIVE DIRECT TarBase 7.0
TOP2B hsa-miR-23c low: 0 high: 2 2 2 2 -
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr3:25598206-25598228 Chimeric fragments POSITIVE DIRECT TarBase 8.0
Kameswaran V et al. 2014 IP Pancreas BETA Cells N/A N/A
Location Method Result Regulation Validation Type Source
chr3:25598208-25598231 HITS-CLIP POSITIVE DIRECT TarBase 7.0
CCNT2 hsa-miR-23c low: 0 high: 2 2 2 2 0.857
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr2:134955454-134955476 Chimeric fragments POSITIVE DIRECT TarBase 8.0
Haecker Irina et al. 2012 IP Bone Marrow BCBL1 N/A N/A
Location Method Result Regulation Validation Type Source
chr2:134956730-134956752 HITS-CLIP POSITIVE DIRECT TarBase 7.0
PKIA hsa-miR-23c low: 0 high: 2 2 2 2 0.822
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr8:78602579-78602602 Chimeric fragments POSITIVE DIRECT TarBase 8.0
Skalsky Rebecca L. et al. 2012 IP N/A EF3DAGO2 N/A N/A
Location Method Result Regulation Validation Type Source
chr8:78602585-78602599 PAR-CLIP POSITIVE DIRECT TarBase 7.0
ZNF217 hsa-miR-23c low: 0 high: 2 2 2 2 0.562
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr20:53569138-53569171 Chimeric fragments POSITIVE DIRECT TarBase 8.0
Skalsky Rebecca L. et al. 2012 IP N/A EF3DAGO2 N/A N/A
Location Method Result Regulation Validation Type Source
chr20:53567510-53567532 PAR-CLIP POSITIVE DIRECT TarBase 7.0
C16orf72 hsa-miR-23c low: 0 high: 2 2 2 2 0.951
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr16:9117895-9117918 Chimeric fragments POSITIVE DIRECT TarBase 8.0
Skalsky Rebecca L. et al. 2012 IP N/A EF3DAGO2 N/A N/A
Location Method Result Regulation Validation Type Source
chr16:9117898-9117916 PAR-CLIP POSITIVE DIRECT TarBase 7.0
KMT2E hsa-miR-23c low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr7:105066772-105066795 Chimeric fragments POSITIVE DIRECT TarBase 8.0
MATR3 hsa-miR-23c low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr5:139329445-139329470 Chimeric fragments POSITIVE DIRECT TarBase 8.0
ALAS1 hsa-miR-23c low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr3:52214237-52214263 Chimeric fragments POSITIVE DIRECT TarBase 8.0
CDS2 hsa-miR-23c low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr20:5191327-5191352 Chimeric fragments POSITIVE DIRECT TarBase 8.0
TMEM245 hsa-miR-23c low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr9:109015190-109015212 Chimeric fragments POSITIVE DIRECT TarBase 8.0
SLC38A1 hsa-miR-23c low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr12:46183320-46183351 Chimeric fragments POSITIVE DIRECT TarBase 8.0
SUB1 hsa-miR-23c low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr5:32601211-32601234 Chimeric fragments POSITIVE DIRECT TarBase 8.0
TUSC2 hsa-miR-23c low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr3:50325097-50325119 Chimeric fragments POSITIVE DIRECT TarBase 8.0
NFE2L2 hsa-miR-23c low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Embryo ESC N/A N/A
Location Method Result Regulation Validation Type Source
chr2:177230710-177230731 Chimeric fragments POSITIVE DIRECT TarBase 8.0
FNBP1L hsa-miR-23c low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr1:93554142-93554167 Chimeric fragments POSITIVE DIRECT TarBase 8.0