Please cite:
Dimitra Karagkouni, Maria D. Paraskevopoulou, Serafeim Chatzopoulos, Ioannis S. Vlachos, Spyros Tastsoglou, Ilias Kanellos, Dimitris Papadimitriou, Ioannis Kavakiotis, Sofia Maniou, Giorgos Skoufos, Thanasis Vergoulis, Theodore Dalamagas, Artemis G. Hatzigeorgiou; DIANA-TarBase v8: a decade-long collection of experimentally supported miRNA–gene interactions, Nucleic Acids Research, gkx1141, https://doi.org/10.1093/nar/gkx1141
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hsa-miR-3065-3p


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Interactions: 447, Experiments: (low: , high: , unknown: ) Cell lines: , Tissues: , Publications:
Gene name miRNA name Experiments
throughput
Publications Cell lines Tissues Pred. Score
GNB2L1 hsa-miR-3065-3p low: 0 high: 12 2 2 2 -
High-throughput experiments (12 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr5:181243336-181243364 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:emetine
Location Method Result Regulation Validation Type Source
chr5:181243336-181243364 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr5:181243336-181243364 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chr5:181243336-181243364 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr5:181241593-181241614 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr5:181243336-181243364 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr5:181243336-181243364 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr5:181243336-181243364 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr5:181243336-181243364 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr5:181243336-181243364 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr5:181241593-181241614 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Kameswaran V et al. 2014 IP Pancreas BETA Cells N/A N/A
Location Method Result Regulation Validation Type Source
chr5:181243336-181243364 HITS-CLIP POSITIVE DIRECT TarBase 7.0
MTHFD2 hsa-miR-3065-3p low: 0 high: 8 2 2 2 -
High-throughput experiments (8 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr2:74214187-74214210 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr2:74214163-74214186 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr2:74214187-74214210 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr2:74214187-74214210 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr2:74214163-74214186 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr2:74214163-74214186 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr2:74214163-74214186 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Kameswaran V et al. 2014 IP Pancreas BETA Cells N/A N/A
Location Method Result Regulation Validation Type Source
chr2:74214187-74214210 HITS-CLIP POSITIVE DIRECT TarBase 7.0
RIMS3 hsa-miR-3065-3p low: 0 high: 6 1 1 1 0.990
High-throughput experiments (6 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr1:40621305-40621327 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr1:40621305-40621327 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr1:40621305-40621327 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr1:40621305-40621327 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr1:40621305-40621327 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr1:40621305-40621327 HITS-CLIP POSITIVE DIRECT TarBase 7.0
GTF3C4 hsa-miR-3065-3p low: 0 high: 4 2 2 2 -
High-throughput experiments (4 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chr9:132694811-132694831 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr9:132689883-132689905 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr9:132689883-132689905 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Kameswaran V et al. 2014 IP Pancreas BETA Cells N/A N/A
Location Method Result Regulation Validation Type Source
chr9:132689883-132689905 HITS-CLIP POSITIVE DIRECT TarBase 7.0
LMNB1 hsa-miR-3065-3p low: 0 high: 4 1 1 1 -
High-throughput experiments (4 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr5:126822842-126822865 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:emetine
Location Method Result Regulation Validation Type Source
chr5:126822842-126822865 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr5:126836654-126836680 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr5:126822842-126822865 HITS-CLIP POSITIVE DIRECT TarBase 7.0
RAD50 hsa-miR-3065-3p low: 0 high: 4 1 1 1 -
High-throughput experiments (4 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr5:132638197-132638216 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr5:132638197-132638216 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr5:132638197-132638216 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr5:132638197-132638216 HITS-CLIP POSITIVE DIRECT TarBase 7.0
TRIM28 hsa-miR-3065-3p low: 0 high: 4 1 1 1 -
High-throughput experiments (4 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr19:58550481-58550507 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr19:58550481-58550507 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr19:58550481-58550507 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr19:58545743-58545768 HITS-CLIP POSITIVE DIRECT TarBase 7.0
CELF1 hsa-miR-3065-3p low: 0 high: 4 1 1 1 -
High-throughput experiments (4 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr11:47468757-47468783 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr11:47469979-47470001 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr11:47468757-47468783 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr11:47468757-47468783 HITS-CLIP POSITIVE DIRECT TarBase 7.0
FAM135A hsa-miR-3065-3p low: 0 high: 3 2 2 2 -
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr6:70560934-70560960 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr6:70413597-70413620 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Kameswaran V et al. 2014 IP Pancreas BETA Cells N/A N/A
Location Method Result Regulation Validation Type Source
chr6:70560934-70560960 HITS-CLIP POSITIVE DIRECT TarBase 7.0
HMGCS1 hsa-miR-3065-3p low: 0 high: 3 2 2 2 -
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr5:43289914-43289936 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr5:43289914-43289936 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Kameswaran V et al. 2014 IP Pancreas BETA Cells N/A N/A
Location Method Result Regulation Validation Type Source
chr5:43289914-43289936 HITS-CLIP POSITIVE DIRECT TarBase 7.0
BTG2 hsa-miR-3065-3p low: 0 high: 3 1 1 1 -
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr1:203308725-203308746 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr1:203308725-203308746 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr1:203308725-203308746 HITS-CLIP POSITIVE DIRECT TarBase 7.0
WDR6 hsa-miR-3065-3p low: 0 high: 3 2 2 2 -
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr3:49015291-49015315 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr3:49013127-49013150 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Kameswaran V et al. 2014 IP Pancreas BETA Cells N/A N/A
Location Method Result Regulation Validation Type Source
chr3:49013127-49013150 HITS-CLIP POSITIVE DIRECT TarBase 7.0
ACTG1 hsa-miR-3065-3p low: 0 high: 3 1 1 1 -
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chr17:81511954-81511977 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr17:81511954-81511977 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr17:81511570-81511592 HITS-CLIP POSITIVE DIRECT TarBase 7.0
RPL3 hsa-miR-3065-3p low: 0 high: 3 1 1 1 -
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr22:39319068-39319090 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr22:39319068-39319090 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr22:39319068-39319090 HITS-CLIP POSITIVE DIRECT TarBase 7.0
ISYNA1 hsa-miR-3065-3p low: 0 high: 3 1 1 1 -
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr19:18436678-18436704 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr19:18436821-18436843 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr19:18435367-18435392 HITS-CLIP POSITIVE DIRECT TarBase 7.0
PILRB hsa-miR-3065-3p low: 0 high: 3 1 1 1 -
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr7:100352668-100352696 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr7:100352668-100352696 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr7:100352433-100352460 HITS-CLIP POSITIVE DIRECT TarBase 7.0
H3F3B hsa-miR-3065-3p low: 0 high: 3 1 1 1 -
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chr17:75779741-75779763 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr17:75779741-75779763 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr17:75779741-75779763 HITS-CLIP POSITIVE DIRECT TarBase 7.0
CSNK1D hsa-miR-3065-3p low: 0 high: 3 1 1 1 -
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr17:82273372-82273394 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr17:82273372-82273394 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr17:82243472-82243494 HITS-CLIP POSITIVE DIRECT TarBase 7.0
CKB hsa-miR-3065-3p low: 0 high: 3 1 1 1 -
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr14:103519697-103519715 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr14:103519697-103519715 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr14:103519691-103519713 HITS-CLIP POSITIVE DIRECT TarBase 7.0
LENG8 hsa-miR-3065-3p low: 0 high: 3 1 1 1 -
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr19:54456787-54456815 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr19:54460641-54460662 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr19:54456759-54456783 HITS-CLIP POSITIVE DIRECT TarBase 7.0