Please cite:
Dimitra Karagkouni, Maria D. Paraskevopoulou, Serafeim Chatzopoulos, Ioannis S. Vlachos, Spyros Tastsoglou, Ilias Kanellos, Dimitris Papadimitriou, Ioannis Kavakiotis, Sofia Maniou, Giorgos Skoufos, Thanasis Vergoulis, Theodore Dalamagas, Artemis G. Hatzigeorgiou; DIANA-TarBase v8: a decade-long collection of experimentally supported miRNA–gene interactions, Nucleic Acids Research, gkx1141, https://doi.org/10.1093/nar/gkx1141
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hsa-miR-3065-5p


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Interactions: 251, Experiments: (low: , high: , unknown: ) Cell lines: , Tissues: , Publications:
Gene name miRNA name Experiments
throughput
Publications Cell lines Tissues Pred. Score
HNRNPK hsa-miR-3065-5p low: 0 high: 13 1 1 1 -
High-throughput experiments (13 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr9:83969813-83969832 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr9:83969813-83969832 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr9:83969813-83969832 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chr9:83969813-83969832 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:emetine
Location Method Result Regulation Validation Type Source
chr9:83969813-83969832 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr9:83969813-83969832 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr9:83969813-83969832 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr9:83969813-83969832 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr9:83969813-83969832 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr9:83969813-83969832 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr9:83969813-83969832 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr9:83969813-83969832 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr9:83969813-83969832 HITS-CLIP POSITIVE DIRECT TarBase 7.0
DDX3X hsa-miR-3065-5p low: 0 high: 10 2 2 2 0.970
High-throughput experiments (10 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chrX:41350197-41350219 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:emetine
Location Method Result Regulation Validation Type Source
chrX:41349864-41349890 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chrX:41349356-41349379 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chrX:41349356-41349379 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chrX:41346900-41346928 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chrX:41346900-41346928 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chrX:41346900-41346928 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chrX:41349356-41349379 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chrX:41346900-41346928 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Kameswaran V et al. 2014 IP Pancreas BETA Cells N/A N/A
Location Method Result Regulation Validation Type Source
chrX:41349864-41349890 HITS-CLIP POSITIVE DIRECT TarBase 7.0
NPTX1 hsa-miR-3065-5p low: 0 high: 8 1 1 1 0.915
High-throughput experiments (8 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr17:80467216-80467242 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr17:80467216-80467242 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr17:80467216-80467242 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr17:80468179-80468207 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr17:80467216-80467242 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr17:80467216-80467242 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr17:80467216-80467242 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr17:80467216-80467242 HITS-CLIP POSITIVE DIRECT TarBase 7.0
BRD2 hsa-miR-3065-5p low: 0 high: 5 2 3 3 -
High-throughput experiments (5 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr6:32981255-32981277 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr6:32981255-32981277 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr6:32981255-32981277 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Haecker Irina et al. 2012 IP Bone Marrow BCBL1 N/A N/A
Location Method Result Regulation Validation Type Source
chr6:32981255-32981277 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Haecker Irina et al. 2012 IP Pleura BC3 N/A N/A
Location Method Result Regulation Validation Type Source
chr6:32981255-32981277 HITS-CLIP POSITIVE DIRECT TarBase 7.0
NUCKS1 hsa-miR-3065-5p low: 0 high: 4 1 1 1 0.999
High-throughput experiments (4 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr1:205714268-205714294 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr1:205714268-205714294 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chr1:205713443-205713466 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr1:205713336-205713357 HITS-CLIP POSITIVE DIRECT TarBase 7.0
SERINC1 hsa-miR-3065-5p low: 0 high: 4 1 1 1 0.465
High-throughput experiments (4 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr6:122458575-122458603 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chr6:122458575-122458603 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr6:122458575-122458603 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr6:122458575-122458603 HITS-CLIP POSITIVE DIRECT TarBase 7.0
CANX hsa-miR-3065-5p low: 0 high: 3 3 3 3 0.897
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr5:179705713-179705737 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Kameswaran V et al. 2014 IP Pancreas BETA Cells N/A N/A
Location Method Result Regulation Validation Type Source
chr5:179705713-179705737 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Haecker Irina et al. 2012 IP Bone Marrow BCBL1 N/A N/A
Location Method Result Regulation Validation Type Source
chr5:179730619-179730647 HITS-CLIP POSITIVE DIRECT TarBase 7.0
DENND4B hsa-miR-3065-5p low: 0 high: 3 2 2 2 0.929
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr1:153929536-153929558 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr1:153929536-153929558 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Haecker Irina et al. 2012 IP Pleura BC3 N/A N/A
Location Method Result Regulation Validation Type Source
chr1:153929536-153929558 HITS-CLIP POSITIVE DIRECT TarBase 7.0
SLC6A15 hsa-miR-3065-5p low: 0 high: 3 1 1 1 -
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr12:84885892-84885917 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr12:84885892-84885917 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr12:84885892-84885917 HITS-CLIP POSITIVE DIRECT TarBase 7.0
CCNT2 hsa-miR-3065-5p low: 0 high: 3 1 1 1 0.985
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr2:134957326-134957354 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr2:134956117-134956145 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr2:134956081-134956108 HITS-CLIP POSITIVE DIRECT TarBase 7.0
NUFIP2 hsa-miR-3065-5p low: 0 high: 3 1 1 1 0.994
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr17:29262916-29262944 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr17:29262554-29262578 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chr17:29258493-29258512 HITS-CLIP POSITIVE DIRECT TarBase 7.0
CBX4 hsa-miR-3065-5p low: 0 high: 3 2 2 2 -
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr17:79833163-79833183 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr17:79833163-79833183 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Haecker Irina et al. 2012 IP Pleura BC3 N/A N/A
Location Method Result Regulation Validation Type Source
chr17:79833163-79833183 HITS-CLIP POSITIVE DIRECT TarBase 7.0
MYLIP hsa-miR-3065-5p low: 0 high: 2 1 1 1 0.649
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr6:16147735-16147762 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr6:16146744-16146770 HITS-CLIP POSITIVE DIRECT TarBase 7.0
AFF4 hsa-miR-3065-5p low: 0 high: 2 1 1 1 0.988
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr5:132877412-132877436 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr5:132877412-132877436 HITS-CLIP POSITIVE DIRECT TarBase 7.0
UBE2K hsa-miR-3065-5p low: 0 high: 2 1 2 2 0.998
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Haecker Irina et al. 2012 IP Bone Marrow BCBL1 N/A N/A
Location Method Result Regulation Validation Type Source
chr4:39778740-39778768 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Haecker Irina et al. 2012 IP Pleura BC3 N/A N/A
Location Method Result Regulation Validation Type Source
chr4:39778740-39778768 HITS-CLIP POSITIVE DIRECT TarBase 7.0
GGA2 hsa-miR-3065-5p low: 0 high: 2 2 2 2 0.844
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr16:23467001-23467027 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Kameswaran V et al. 2014 IP Pancreas BETA Cells N/A N/A
Location Method Result Regulation Validation Type Source
chr16:23466401-23466424 HITS-CLIP POSITIVE DIRECT TarBase 7.0
CDKN1B hsa-miR-3065-5p low: 0 high: 2 1 2 2 0.744
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Haecker Irina et al. 2012 IP Bone Marrow BCBL1 N/A N/A
Location Method Result Regulation Validation Type Source
chr12:12721788-12721814 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Haecker Irina et al. 2012 IP Pleura BC3 N/A N/A
Location Method Result Regulation Validation Type Source
chr12:12722221-12722247 HITS-CLIP POSITIVE DIRECT TarBase 7.0
SLC38A1 hsa-miR-3065-5p low: 0 high: 2 2 2 2 -
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr12:46183961-46183985 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Haecker Irina et al. 2012 IP Bone Marrow BCBL1 N/A N/A
Location Method Result Regulation Validation Type Source
chr12:46183961-46183985 HITS-CLIP POSITIVE DIRECT TarBase 7.0
HECA hsa-miR-3065-5p low: 0 high: 2 1 1 1 0.993
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr6:139180649-139180672 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr6:139180649-139180672 HITS-CLIP POSITIVE DIRECT TarBase 7.0
HOXB3 hsa-miR-3065-5p low: 0 high: 2 1 1 1 0.737
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr17:48549387-48549414 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr17:48549387-48549414 HITS-CLIP POSITIVE DIRECT TarBase 7.0